mRNA_L-elsbetiae_contig919.18208.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig919.18208.1
Unique NamemRNA_L-elsbetiae_contig919.18208.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig919.18208.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.240e-8
Identity = 43/126 (34.13%), Postives = 68/126 (53.97%), Query Frame = 2 
Query:  161 GVVFYEGIYSLKWIEAASMIGGPASFISGCALIAWAIRLVIMYDPAKRKRWGRHVKEDAMFRALVWLYAAIQGVVWLVMPFYGLQRVSFVTSIFFDMFQDIGTLLAVMLLGGPLKQMDDICDLSRD 538
            G+V  +G+ SL        I  PA  IS  AL+  A+RL++M+ P  R +WGR  +E  +   LV  Y  ++G +W  +   GL R   V  +  ++F    T++A +LLGG L ++DD+  +S D
Sbjct:   75 GLVASDGVTSL--------IEFPALLISEFALVMSAVRLLVMFFPKLRAKWGRFTRERDLVYGLVCAYILMEGALWSGVAAVGLSRTVGVL-VTLELFTGSTTVVAGVLLGGRLNKVDDLLHMSTD 191
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BLAST of mRNA_L-elsbetiae_contig919.18208.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.370e-8
Identity = 36/109 (33.03%), Postives = 61/109 (55.96%), Query Frame = 2 
Query:  212 SMIGGPASFISGCALIAWAIRLVIMYDPAKRKRWGRHVKEDAMFRALVWLYAAIQGVVWLVMPFYGLQRVSFVTSIFFDMFQDIGTLLAVMLLGGPLKQMDDICDLSRD 538
            +MI  P   IS  AL+  A+RL++M+ P  R +WGR  +E  +   LV  Y  ++G +W  +   G+ R   V +   ++F    T++A +L+GG L ++DD+  +S D
Sbjct:   84 NMIEFPVLLISEFALVMSAVRLLVMFFPKLRAKWGRFTREKDLVYGLVCAYILMEGALWSGVAAVGVSRTGGVLATL-ELFSGSTTVVAGVLVGGRLNKVDDLLHMSTD 191
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BLAST of mRNA_L-elsbetiae_contig919.18208.1 vs. uniprot
Match: D8LLA9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA9_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 7.580e-6
Identity = 39/128 (30.47%), Postives = 73/128 (57.03%), Query Frame = 2 
Query:  167 VFYEGIYSLKWIEAASMIGGPASFISGCALIAW---AIRLVIMYDPAKRKRWGRHVKEDA-MFRALVWLYAAIQGVVWLVMPFYGLQRVS--FVTSIFFDMFQDIGTLLAVMLLGGPLKQMDDICDLS 532
            V + G+ SL  +   S+   P + +  C ++A+    +R+++MY P++R+RWGR++K++A M + L+  Y  ++   W+V+   GL RV+   VT +  D    + TL A + L G L++  D+  +S
Sbjct:   67 VMFPGLRSLFILRIFSI---PLTAL--CLVVAYILRGLRVIVMYTPSRRQRWGRYLKKEAAMVKVLLTAYVIVEVAAWIVVRHVGLARVASFMVTVVKID---TVVTLSASLALFGQLRRTQDVFKVS 186
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig919.18208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KX00_9PHAE1.240e-834.13RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LTR6_ECTSI5.370e-833.03Developmental regulator FlbA n=1 Tax=Ectocarpus si... [more]
D8LLA9_ECTSI7.580e-630.47RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig919contigL-elsbetiae_contig919:29537..30763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue5.8e-08
Seed eggNOG ortholog2880.D8LTR6
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001740.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size942
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig919.18208.1prot_L-elsbetiae_contig919.18208.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig919 29902..30549 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816992.1625469-UTR-L-elsbetiae_contig919:29536..299011622816992.1625469-UTR-L-elsbetiae_contig919:29536..29901Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig919 29537..29901 -
1691683966.9419549-UTR-L-elsbetiae_contig919:29536..299011691683966.9419549-UTR-L-elsbetiae_contig919:29536..29901Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig919 29537..29901 -
1622816992.1961637-UTR-L-elsbetiae_contig919:30549..307631622816992.1961637-UTR-L-elsbetiae_contig919:30549..30763Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig919 30550..30763 -
1691683966.9768-UTR-L-elsbetiae_contig919:30549..307631691683966.9768-UTR-L-elsbetiae_contig919:30549..30763Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig919 30550..30763 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816992.1743762-CDS-L-elsbetiae_contig919:29901..300611622816992.1743762-CDS-L-elsbetiae_contig919:29901..30061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig919 29902..30061 -
1691683966.956075-CDS-L-elsbetiae_contig919:29901..300611691683966.956075-CDS-L-elsbetiae_contig919:29901..30061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig919 29902..30061 -
1622816992.1848376-CDS-L-elsbetiae_contig919:30346..305491622816992.1848376-CDS-L-elsbetiae_contig919:30346..30549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig919 30347..30549 -
1691683966.9661603-CDS-L-elsbetiae_contig919:30346..305491691683966.9661603-CDS-L-elsbetiae_contig919:30346..30549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig919 30347..30549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig919.18208.1

>prot_L-elsbetiae_contig919.18208.1 ID=prot_L-elsbetiae_contig919.18208.1|Name=mRNA_L-elsbetiae_contig919.18208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MIGGPASFISGCALIAWAIRLVIMYDPAKRKRWGRHVKEDAMFRALVWLY
AAIQGVVWLVMPFYGLQRVSFVTSIFFDMFQDIGTLLAVMLLGGPLKQMD
DICDLSRDSLFWSCNAWPHR*
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mRNA from alignment at L-elsbetiae_contig919:29537..30763-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig919.18208.1 ID=mRNA_L-elsbetiae_contig919.18208.1|Name=mRNA_L-elsbetiae_contig919.18208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1227bp|location=Sequence derived from alignment at L-elsbetiae_contig919:29537..30763- (Laminarionema elsbetiae ELsaHSoW15)
GCTGACCTCCCGAAGGGAAACCTTTTACGCTATACCACTCATGAAACATC
TGCAAGCAGGTCTCCACGTCTAGGGTGCCTTACGTGGCGCTGTACATACG
CTGTTTGCTTCGTTCAAGACGTACGTGTTCACCCTGGGCTTGTACAACCA
GCCCCCTCGCGGGGTAGTATTCTACGAAGGGATCTATTCGCTGAAGTGGA
TTGAAGCTGCATCCATGATCGGGGGTCCTGCCAGTTTTATCTCTGGCTGT
GCGCTCATCGCATGGGCGATACGTCTCGTGATCATGTATGATCCGGCCAA
GCGGAAGCGGTGGGGGCGCCACGTTAAGGAAGATGCCATGTTCCGCGCTC
TTGTCTGGTTGTATGCGGCGATTCAAGGCGTGGTCTGGTTAGTGATGCCA
TTTTACGGACTGCAAAGGTGAGCGTAGCTTATAACTGTATTGCCTTCGAC
ATTTGGCTGCATGCGGGTTGTAACGAATATACGGCCGAGTCGACCCGTGA
ACCCCAGGATCAAAAACTTACCATATCCAACACTGTGAGCATCAACTCGA
TGCATATGAACATAATAACCACATGTACCTGCTTTGTACATCCTCACGTA
AATATGTTTCAAACCCCCTTTTGTTGCTAATTGAATTCTTTGGTTGCTAC
CCTCAACGCGTTCACGCCCTCGAATCGAAACCCTTGTACATACACACACC
AGGGTATCATTCGTCACGTCGATCTTCTTTGACATGTTTCAAGACATCGG
CACTTTGCTGGCGGTTATGCTACTCGGTGGACCTTTGAAGCAAATGGATG
ATATATGCGATCTATCTCGGGATAGCCTTTTTTGGAGCTGTAATGCTTGG
CCGCATAGGTAGAGTGGAGAAATCTAACGTTGGTGCATAGAGACGATTTG
TAGAGCATGTACTGGGAACGATGTATAGACTATAGTGGAGAATCCGACTT
CGCTGAATAGAGACGATATCTAGCGCCTGGTCGACGCATGGTTTTAAATC
GATAAGAATGCCAAAGTTGTGTCAGGAGTGCTTTGTAGCACATCCTCACC
GAAGGCAAGGAACGTTACCCTGGGCCACCAACACATCGGCAGAGGGCGTC
AACACTAGAGTACGTAGAGGTACATAGGCCGACCGGAGAACTCTCTACCG
TATGTGTAGGCATGAGAGAGTCCCTGTTGCCCCTACTCGGATAGAATTCG
AGATATGACCTTCAAGGCAACATATAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig919:29537..30763-

>mRNA_L-elsbetiae_contig919.18208.1 ID=mRNA_L-elsbetiae_contig919.18208.1|Name=mRNA_L-elsbetiae_contig919.18208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig919:29537..30763- (Laminarionema elsbetiae ELsaHSoW15)
ATGATCGGGGGTCCTGCCAGTTTTATCTCTGGCTGTGCGCTCATCGCATG
GGCGATACGTCTCGTGATCATGTATGATCCGGCCAAGCGGAAGCGGTGGG
GGCGCCACGTTAAGGAAGATGCCATGTTCCGCGCTCTTGTCTGGTTGTAT
GCGGCGATTCAAGGCGTGGTCTGGTTAGTGATGCCATTTTACGGACTGCA
AAGATGATCGGGGGTCCTGCCAGTTTTATCTCTGGCTGTGCGCTCATCGC
ATGGGCGATACGTCTCGTGATCATGTATGATCCGGCCAAGCGGAAGCGGT
GGGGGCGCCACGTTAAGGAAGATGCCATGTTCCGCGCTCTTGTCTGGTTG
TATGCGGCGATTCAAGGCGTGGTCTGGTTAGTGATGCCATTTTACGGACT
GCAAAGGGTATCATTCGTCACGTCGATCTTCTTTGACATGTTTCAAGACA
TCGGCACTTTGCTGGCGGTTATGCTACTCGGTGGACCTTTGAAGCAAATG
GATGATATATGCGATCTATCTCGGGATAGCCTTTTTTGGAGCTGTAATGC
TTGGCCGCATAGGTAGGGTATCATTCGTCACGTCGATCTTCTTTGACATG
TTTCAAGACATCGGCACTTTGCTGGCGGTTATGCTACTCGGTGGACCTTT
GAAGCAAATGGATGATATATGCGATCTATCTCGGGATAGCCTTTTTTGGA
GCTGTAATGCTTGGCCGCATAGGTAG
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