prot_L-elsbetiae_contig9154.18182.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9154.18182.1
Unique Nameprot_L-elsbetiae_contig9154.18182.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length42
Homology
BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: D8LJI3_ECTSI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJI3_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 4.160e-18
Identity = 36/40 (90.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 40
            +ELVGTLRGFDDYVNMVLDDVTEYE+DADGTKR+IQLDQ+
Sbjct:   27 KELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQLDQI 66          
BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: A0A835ZDD9_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.690e-14
Identity = 29/40 (72.50%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 40
            +ELVGTLRGFDDYVNMVL+DVTEYE+DA+G +R+++L+Q+
Sbjct:   27 KELVGTLRGFDDYVNMVLEDVTEYEVDAEGVRREVKLEQI 66          
BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: H3G705_PHYRM (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G705_PHYRM)

HSP 1 Score: 62.4 bits (150), Expect = 6.610e-12
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 0
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 40
            +E +GTLRGFDDYVNMVLDDVTEYEI  +G KR+++LDQV
Sbjct:   19 KEFIGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQV 57          
BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: A0A7S4M2I3_9EUKA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2I3_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 1.100e-11
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 40
            +E+VGTLRGFDDYVNMVL+DVTEYEI ADG KR  +LDQ+
Sbjct:   45 KEIVGTLRGFDDYVNMVLEDVTEYEITADG-KRTTKLDQI 83          
BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: A0A067CXC5_SAPPC (U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CXC5_SAPPC)

HSP 1 Score: 62.4 bits (150), Expect = 1.140e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 40
            +E VGTLRGFDDYVNMVLDDVTEYE+  +G KRK+ +DQV
Sbjct:   28 KEFVGTLRGFDDYVNMVLDDVTEYEVTPEG-KRKVHVDQV 66          
BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: K3W4W8_GLOUD (U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=Oomycota TaxID=4762 RepID=K3W4W8_GLOUD)

HSP 1 Score: 62.0 bits (149), Expect = 1.460e-11
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 40
            +E +GTLRGFDDYVNMVLDDVTEYEI  +G KR+I+LDQV
Sbjct:   28 KEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREIKLDQV 66          
BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: A0A8J5M5U7_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M5U7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.030e-11
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 0
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 40
            +E +GTLRGFDDYVNMVLDDVTEYEI  +G KR+++LDQV
Sbjct:   27 KEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQV 65          
BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: R1CRE5_EMIHU (U6 snRNA-associated Sm-like protein LSm5 (Fragment) n=3 Tax=Eukaryota TaxID=2759 RepID=R1CRE5_EMIHU)

HSP 1 Score: 61.2 bits (147), Expect = 2.420e-11
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 40
            +ELVGTLRGFDDYVNMVLDDVTEYEI  +G KR  +LDQ+
Sbjct:   20 KELVGTLRGFDDYVNMVLDDVTEYEITPEG-KRVTKLDQI 58          
BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: A0A485LJV5_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJV5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.880e-11
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 40
            +E VGTLRGFDDYVNMVLDDV EYEI  +G KRKI++DQV
Sbjct:   23 KEFVGTLRGFDDYVNMVLDDVIEYEITPEG-KRKIKVDQV 61          
BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: W2LTZ1_PHYPR (U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=Phytophthora TaxID=4783 RepID=W2LTZ1_PHYPR)

HSP 1 Score: 61.6 bits (148), Expect = 3.530e-11
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 0
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 40
            +E +GTLRGFDDYVNMVLDDVTEYEI  +G KR+++LDQV
Sbjct:   50 KEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQV 88          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJI3_ECTSI4.160e-1890.00U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=E... [more]
A0A835ZDD9_9STRA3.690e-1472.50U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]
H3G705_PHYRM6.610e-1275.00U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=P... [more]
A0A7S4M2I3_9EUKA1.100e-1177.50U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=P... [more]
A0A067CXC5_SAPPC1.140e-1175.00U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=S... [more]
K3W4W8_GLOUD1.460e-1177.50U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=... [more]
A0A8J5M5U7_9STRA2.030e-1175.00Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
R1CRE5_EMIHU2.420e-1177.50U6 snRNA-associated Sm-like protein LSm5 (Fragment... [more]
A0A485LJV5_9STRA2.880e-1177.50U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=A... [more]
W2LTZ1_PHYPR3.530e-1175.00U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=P... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 1..41
e-value: 9.0E-11
score: 43.2
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 2..36
e-value: 1.2E-10
score: 40.9
IPR033871Sm-like protein LSm5PANTHERPTHR20971U6 SNRNA-ASSOCIATED PROTEINcoord: 1..40
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 2..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9154contigL-elsbetiae_contig9154:7466..7591 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9154.18182.1mRNA_L-elsbetiae_contig9154.18182.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9154 7466..7591 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9154.18182.1 ID=prot_L-elsbetiae_contig9154.18182.1|Name=mRNA_L-elsbetiae_contig9154.18182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=42bp
QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQVT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR033871LSm5
IPR010920LSM_dom_sf