mRNA_L-elsbetiae_contig9154.18182.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9154.18182.1
Unique NamemRNA_L-elsbetiae_contig9154.18182.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: D8LJI3_ECTSI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJI3_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 4.160e-18
Identity = 36/40 (90.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 120
            +ELVGTLRGFDDYVNMVLDDVTEYE+DADGTKR+IQLDQ+
Sbjct:   27 KELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQLDQI 66
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BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: A0A835ZDD9_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.690e-14
Identity = 29/40 (72.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 120
            +ELVGTLRGFDDYVNMVL+DVTEYE+DA+G +R+++L+Q+
Sbjct:   27 KELVGTLRGFDDYVNMVLEDVTEYEVDAEGVRREVKLEQI 66
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BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: H3G705_PHYRM (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G705_PHYRM)

HSP 1 Score: 62.4 bits (150), Expect = 6.610e-12
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 120
            +E +GTLRGFDDYVNMVLDDVTEYEI  +G KR+++LDQV
Sbjct:   19 KEFIGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQV 57
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BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: A0A7S4M2I3_9EUKA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2I3_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 1.100e-11
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 120
            +E+VGTLRGFDDYVNMVL+DVTEYEI ADG KR  +LDQ+
Sbjct:   45 KEIVGTLRGFDDYVNMVLEDVTEYEITADG-KRTTKLDQI 83
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BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: A0A067CXC5_SAPPC (U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CXC5_SAPPC)

HSP 1 Score: 62.4 bits (150), Expect = 1.140e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 120
            +E VGTLRGFDDYVNMVLDDVTEYE+  +G KRK+ +DQV
Sbjct:   28 KEFVGTLRGFDDYVNMVLDDVTEYEVTPEG-KRKVHVDQV 66
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BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: K3W4W8_GLOUD (U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=Oomycota TaxID=4762 RepID=K3W4W8_GLOUD)

HSP 1 Score: 62.0 bits (149), Expect = 1.460e-11
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 120
            +E +GTLRGFDDYVNMVLDDVTEYEI  +G KR+I+LDQV
Sbjct:   28 KEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREIKLDQV 66
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BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: A0A8J5M5U7_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M5U7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.030e-11
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 120
            +E +GTLRGFDDYVNMVLDDVTEYEI  +G KR+++LDQV
Sbjct:   27 KEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQV 65
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BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: R1CRE5_EMIHU (U6 snRNA-associated Sm-like protein LSm5 (Fragment) n=3 Tax=Eukaryota TaxID=2759 RepID=R1CRE5_EMIHU)

HSP 1 Score: 61.2 bits (147), Expect = 2.420e-11
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 120
            +ELVGTLRGFDDYVNMVLDDVTEYEI  +G KR  +LDQ+
Sbjct:   20 KELVGTLRGFDDYVNMVLDDVTEYEITPEG-KRVTKLDQI 58
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BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: A0A485LJV5_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJV5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.880e-11
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 120
            +E VGTLRGFDDYVNMVLDDV EYEI  +G KRKI++DQV
Sbjct:   23 KEFVGTLRGFDDYVNMVLDDVIEYEITPEG-KRKIKVDQV 61
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BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Match: W2LTZ1_PHYPR (U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=Phytophthora TaxID=4783 RepID=W2LTZ1_PHYPR)

HSP 1 Score: 61.6 bits (148), Expect = 3.530e-11
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQV 120
            +E +GTLRGFDDYVNMVLDDVTEYEI  +G KR+++LDQV
Sbjct:   50 KEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQV 88
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9154.18182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJI3_ECTSI4.160e-1890.00U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=E... [more]
A0A835ZDD9_9STRA3.690e-1472.50U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]
H3G705_PHYRM6.610e-1275.00U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=P... [more]
A0A7S4M2I3_9EUKA1.100e-1177.50U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=P... [more]
A0A067CXC5_SAPPC1.140e-1175.00U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=S... [more]
K3W4W8_GLOUD1.460e-1177.50U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=... [more]
A0A8J5M5U7_9STRA2.030e-1175.00Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
R1CRE5_EMIHU2.420e-1177.50U6 snRNA-associated Sm-like protein LSm5 (Fragment... [more]
A0A485LJV5_9STRA2.880e-1177.50U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=A... [more]
W2LTZ1_PHYPR3.530e-1175.00U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9154contigL-elsbetiae_contig9154:7466..7591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue7.9e-13
Seed eggNOG ortholog2880.D8LJI3
Preferred nameLSM5
KEGG koko:K12624
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009056,GO:0009057,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0022613,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033993,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0042221,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0046982,GO:0046983,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097305,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1990726,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process
EggNOG OGsCOG1958@1,KOG1775@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Ec32 ortholog descriptionSm-like protein LSm5
Ec32 orthologEc-17_002110.1
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816989.7621937-CDS-L-elsbetiae_contig9154:7465..75911622816989.7621937-CDS-L-elsbetiae_contig9154:7465..7591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9154 7466..7591 -
1691683965.1643891-CDS-L-elsbetiae_contig9154:7465..75911691683965.1643891-CDS-L-elsbetiae_contig9154:7465..7591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9154 7466..7591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9154.18182.1prot_L-elsbetiae_contig9154.18182.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9154 7466..7591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9154.18182.1

>prot_L-elsbetiae_contig9154.18182.1 ID=prot_L-elsbetiae_contig9154.18182.1|Name=mRNA_L-elsbetiae_contig9154.18182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=42bp
QELVGTLRGFDDYVNMVLDDVTEYEIDADGTKRKIQLDQVT*
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mRNA from alignment at L-elsbetiae_contig9154:7466..7591-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9154.18182.1 ID=mRNA_L-elsbetiae_contig9154.18182.1|Name=mRNA_L-elsbetiae_contig9154.18182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=126bp|location=Sequence derived from alignment at L-elsbetiae_contig9154:7466..7591- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGCTCGTGGGCACGTTGAGAGGATTCGACGACTACGTGAACATGGT
GCTGGACGACGTGACGGAGTACGAGATCGATGCTGATGGGACCAAGCGGA
AGATTCAGCTCGATCAGGTGACATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9154:7466..7591-

>mRNA_L-elsbetiae_contig9154.18182.1 ID=mRNA_L-elsbetiae_contig9154.18182.1|Name=mRNA_L-elsbetiae_contig9154.18182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=252bp|location=Sequence derived from alignment at L-elsbetiae_contig9154:7466..7591- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGCTCGTGGGCACGTTGAGAGGATTCGACGACTACGTGAACATGGT
GCTGGACGACGTGACGGAGTACGAGATCGATGCTGATGGGACCAAGCGGA
AGATTCAGCTCGATCAGGTGACATGACAGGAGCTCGTGGGCACGTTGAGA
GGATTCGACGACTACGTGAACATGGTGCTGGACGACGTGACGGAGTACGA
GATCGATGCTGATGGGACCAAGCGGAAGATTCAGCTCGATCAGGTGACAT
GA
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