prot_L-elsbetiae_contig9143.18173.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9143.18173.1
Unique Nameprot_L-elsbetiae_contig9143.18173.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length421
Homology
BLAST of mRNA_L-elsbetiae_contig9143.18173.1 vs. uniprot
Match: A0A6H5JY66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY66_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 2.600e-84
Identity = 226/413 (54.72%), Postives = 252/413 (61.02%), Query Frame = 0
Query:   21 LVVTGGYGYTPGTYSEEGSRNGESLYVSADRSAELFFSE---------VGDARRRERRGLLLLPRNVIPDDADXXXXXXXXXXXELVHRGLGACTGGFWSLAPAGAGYPRLVVGDCAGHPADIKVAVWSEVTCPDCAEQTYNGAAPTVVCAAAGGEADGS-ATPSPSSPGGVGDGDGXAXVGXXXXXXXXXXXXXXXXXXXXAGTP-VAVDDSCKVLEVGGRYPGLYTVAGTYNGRGDFYSDDLQSNIFFEAVGSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE---DRSXXXXXXXXXXXXXGLEDRRRLAACTEGYWIKTPTGGGYPFFAVADCAANPEDVPPSSSAWSAVTCDGCAPTAVTADQPIACATGVDAVVSTPSPVQPVRVSA-TVETLPGAGP--CES 416
            ++VTGGYGYTPG Y EEG+RNG SLY+S DRSAELFFSE                      LLP++++ DD++               R LGACT GFWSLAPAG+GYPRL VGDCA HPADIKV  WSEVTC  C EQ +NGA P V C +     D S ATPSPS+         X X  XXXXXXX             A  P + VDDSCKV++V GRYPGLYTVAG+YN RGDFYS D   NIF        XXXXXXXXXXXXXXXXXXXXXXXXXXXX       +RS                  R LAAC+ GYWIK PTGGGYP FAVADCAA PE++  SSS W  VTC+GC  T  T+ Q I CATG DA V+TPSPV PV        TLPGAGP  CE+
Sbjct:   17 VLVTGGYGYTPGVYFEEGTRNGGSLYISEDRSAELFFSERXXXXXXXXXXXXXXXXXXXXXLLPQDML-DDSEKAVSVGEGG--SAAKRRLGACTSGFWSLAPAGSGYPRLTVGDCASHPADIKVTAWSEVTCEGCEEQAFNGAVPAVACTS-----DNSLATPSPSAASTXXXXXXXXXXXXXXXXXXGGEVGAQQTPSPVASAPEIVVDDSCKVIDVVGRYPGLYTVAGSYNERGDFYSADGGHNIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLRGLFGERSAQQATG------------RNLAACSNGYWIKMPTGGGYPLFAVADCAAYPEEIA-SSSTWMIVTCEGCVGTEATSSQTITCATGADAFVATPSPVSPVVAGGGETITLPGAGPSTCEA 408          
BLAST of mRNA_L-elsbetiae_contig9143.18173.1 vs. uniprot
Match: D7G5Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q9_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 1.060e-74
Identity = 193/321 (60.12%), Postives = 208/321 (64.80%), Query Frame = 0
Query:  100 RGLGACTGGFWSLAPAGAGYPRLVVGDCAGHPADIKVAVWSEVTCPDCAEQTYNGAAPTVVCAAAGGEADGSATPSPSSPGGVGDGDGXAXVGXXXXXXXXXXXXXXXXXXXXAGTP-VAVDDSCKVLEVGGRYPGLYTVAGTYNGRGDFYSDDLQSNIFFEAVGSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDRSXXXXXXXXXXXXXGLEDRRRLAACTEGYWIKTPTGGGYPFFAVADCAANPEDVPPSSSAWSAVTCDGCAPTAVTADQPIACATGVDAVVSTPSPVQPVRVSAT-VETLPGAGP--CES 416
            R LGACT GFWSLAPAG+GYPRL VGDCA HPADIKV  W EVTC  C EQ +NGA P V CA+     D  ATPSPS+         X X  XXXXXXX             A  P + VDDSCKV++VGGRYPGLYTVAG+YN RGDFYS D   NIFFEA  SSAXXXXXXXXX XXXXXXXXXXXXXX        DR                   R LAAC+ GYWIK PTGGGYPFFAVADCAA PE++  SSSAW  VTC+GC  T  T+ Q I CATG DA V+TPSPV PV        TLPGAGP  CE+
Sbjct:   35 RRLGACTSGFWSLAPAGSGYPRLTVGDCASHPADIKVTAWLEVTCEGCEEQAFNGAVPAVACASD----DSPATPSPSAXXXXXXXXXXXXXXXXXXXXXGGEVGAQQTPSPVASAPEIIVDDSCKVVDVGGRYPGLYTVAGSYNERGDFYSADGGHNIFFEA--SSAXXXXXXXXXFXXXXXXXXXXXXXXG-------DRRRRVLRGLFGERSGQQATGRNLAACSNGYWIKMPTGGGYPFFAVADCAAYPEEIA-SSSAWMIVTCEGCVGTEATSAQAITCATGTDAFVATPSPVSPVVAGGEETVTLPGAGPSTCEA 341          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9143.18173.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JY66_9PHAE2.600e-8454.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5Q9_ECTSI1.060e-7460.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..420
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.544

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9143contigL-elsbetiae_contig9143:2208..7931 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9143.18173.1mRNA_L-elsbetiae_contig9143.18173.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9143 2208..7931 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9143.18173.1 ID=prot_L-elsbetiae_contig9143.18173.1|Name=mRNA_L-elsbetiae_contig9143.18173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=421bp
AAAAAAAVAFAIPVAATCETLVVTGGYGYTPGTYSEEGSRNGESLYVSAD
RSAELFFSEVGDARRRERRGLLLLPRNVIPDDADADADAAGEGDGELVHR
GLGACTGGFWSLAPAGAGYPRLVVGDCAGHPADIKVAVWSEVTCPDCAEQ
TYNGAAPTVVCAAAGGEADGSATPSPSSPGGVGDGDGGAAVGDDDDAGGD
AAAPTATPPPAAAGTPVAVDDSCKVLEVGGRYPGLYTVAGTYNGRGDFYS
DDLQSNIFFEAVGSSAAGDAAAAEGDDGSDDDGSDDDDSDDDDSDDDEDR
SEDRSGDRSGDRSGGLEDRRRLAACTEGYWIKTPTGGGYPFFAVADCAAN
PEDVPPSSSAWSAVTCDGCAPTAVTADQPIACATGVDAVVSTPSPVQPVR
VSATVETLPGAGPCESRYHL*
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