prot_L-elsbetiae_contig914.18168.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig914.18168.1
Unique Nameprot_L-elsbetiae_contig914.18168.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length209
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig914.18168.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 47..63
e-value: 0.002
score: 15.9
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..136
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 137..156
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 157..208
NoneNo IPR availableTMHMMTMhelixcoord: 137..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig914contigL-elsbetiae_contig914:24274..25507 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig914.18168.1mRNA_L-elsbetiae_contig914.18168.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig914 24274..25507 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig914.18168.1 ID=prot_L-elsbetiae_contig914.18168.1|Name=mRNA_L-elsbetiae_contig914.18168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=209bp
GSGFLSGGALFLAGSDVTATGRLEFIGNAAQQGGAVYMEASTLAFDGSLL
FANNTGFGDGGAIWGAGSDMSVAGNVVFTGNKADFSGGAMFITTSSITFS
SETEFVQNVAVCAVCADGYTTGAGYTCAKCTDGRRDATIAVISVVLLLAA
VLAVAARIKYLQSESEQTLAGGSVARRGLARIRSRLKRSKGAQTLKIIVS
YHGKSSLR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat