mRNA_L-elsbetiae_contig914.18168.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig914.18168.1
Unique NamemRNA_L-elsbetiae_contig914.18168.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig914.18168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig914contigL-elsbetiae_contig914:24274..25507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size629
Cds size627
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816988.3993125-CDS-L-elsbetiae_contig914:24273..245691622816988.3993125-CDS-L-elsbetiae_contig914:24273..24569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig914 24274..24569 -
1691683964.127029-CDS-L-elsbetiae_contig914:24273..245691691683964.127029-CDS-L-elsbetiae_contig914:24273..24569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig914 24274..24569 -
1622816988.4114885-CDS-L-elsbetiae_contig914:25176..255071622816988.4114885-CDS-L-elsbetiae_contig914:25176..25507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig914 25177..25507 -
1691683964.1417527-CDS-L-elsbetiae_contig914:25176..255071691683964.1417527-CDS-L-elsbetiae_contig914:25176..25507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig914 25177..25507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig914.18168.1prot_L-elsbetiae_contig914.18168.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig914 24274..25507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig914.18168.1

>prot_L-elsbetiae_contig914.18168.1 ID=prot_L-elsbetiae_contig914.18168.1|Name=mRNA_L-elsbetiae_contig914.18168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=209bp
GSGFLSGGALFLAGSDVTATGRLEFIGNAAQQGGAVYMEASTLAFDGSLL
FANNTGFGDGGAIWGAGSDMSVAGNVVFTGNKADFSGGAMFITTSSITFS
SETEFVQNVAVCAVCADGYTTGAGYTCAKCTDGRRDATIAVISVVLLLAA
VLAVAARIKYLQSESEQTLAGGSVARRGLARIRSRLKRSKGAQTLKIIVS
YHGKSSLR*
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mRNA from alignment at L-elsbetiae_contig914:24274..25507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig914.18168.1 ID=mRNA_L-elsbetiae_contig914.18168.1|Name=mRNA_L-elsbetiae_contig914.18168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1234bp|location=Sequence derived from alignment at L-elsbetiae_contig914:24274..25507- (Laminarionema elsbetiae ELsaHSoW15)
GGGTCTGGTTTCCTTAGCGGCGGGGCACTTTTTCTGGCGGGTTCAGACGT
CACTGCTACTGGCCGGCTCGAGTTCATCGGGAATGCTGCCCAGCAGGGCG
GGGCGGTCTACATGGAAGCCAGCACCCTCGCGTTTGATGGATCTCTTCTT
TTCGCCAACAACACGGGCTTTGGAGACGGCGGCGCTATCTGGGGCGCAGG
CTCAGACATGAGCGTTGCGGGGAACGTCGTATTCACAGGAAATAAGGCGG
ACTTTTCGGGTGGGGCCATGTTCATTACGACCTCATCGATTACGTTCTCA
AGCGAAACTGAGTTCGTCCAAAATGTGGCAGGTGAGAGGCCTACTGGCGA
CAAGCTGTATCCTCCCCCCGGCATGCATTGCCTTATCCTATTTGTGGCAA
CTATGTCCCCCTTTTCGGTAGTGCATAGTAACAGCGGCGGGGTGGGAGGT
TAACGCTCCTGCCTCTCTCGCTCAGAACATATCGCCGACGGTTTAGCAAA
ACAATTTTAGCTAGCGACCAGATGGACGATTGTTCCATTGTGGGCGTGCT
TCAAGCACCGTTTAGATACTCGGTGGAGAATAGATTGTGGCAAGAGCGAC
ACGCTTCTCTGCCGTCGTTGCCGGGCTTGGCGCAAGCACTTTTACTACAA
TTTTTCACGTTCTCTTTGAAGATAGCGCAAACCAATTTTCAAAAAAGAAT
CCACGCGTACCAAGGTGCTGTATCTAGCCAAATGCAGCGTGTCTGAGATC
AAATCGGCATACCACGCCGGGTTTGCACGGCTGAGCGGCAACGCCGTGAC
TTCACTGGCGATGATGCCAGGAACCAATGAGCGATTTGTTTAACGACAGC
AGCATTTCTTCTGCTGCTGTCATAGCCATCATCAGCACACGACGGTTCCA
AGCTCCCTCCCGCCCACCCCTGATCCTTGGCCCGTCAGTTTGCGCCGTGT
GTGCAGACGGCTACACGACAGGTGCAGGGTACACGTGCGCGAAGTGCACG
GACGGTCGCCGGGACGCTACCATTGCCGTCATATCGGTTGTGCTCCTTCT
TGCGGCTGTGCTGGCGGTGGCCGCCCGCATCAAGTACCTGCAATCGGAGT
CCGAACAGACGCTAGCCGGGGGAAGCGTTGCCAGGCGAGGGTTAGCAAGG
ATCAGGTCGCGCTTGAAACGCTCAAAAGGGGCCCAAACACTCAAGATCAT
CGTCTCGTATCATGGCAAATCATCACTCAGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig914:24274..25507-

>mRNA_L-elsbetiae_contig914.18168.1 ID=mRNA_L-elsbetiae_contig914.18168.1|Name=mRNA_L-elsbetiae_contig914.18168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1254bp|location=Sequence derived from alignment at L-elsbetiae_contig914:24274..25507- (Laminarionema elsbetiae ELsaHSoW15)
GGGTCTGGTTTCCTTAGCGGCGGGGCACTTTTTCTGGCGGGTTCAGACGT
CACTGCTACTGGCCGGCTCGAGTTCATCGGGAATGCTGCCCAGCAGGGCG
GGGCGGTCTACATGGAAGCCAGCACCCTCGCGTTTGATGGATCTCTTCTT
TTCGCCAACAACACGGGCTTTGGAGACGGCGGCGCTATCTGGGGCGCAGG
CTCAGACATGAGCGTTGCGGGGAACGTCGTATTCACAGGAAATAAGGCGG
ACTTTTCGGGTGGGGCCATGTTCATTACGACCTCATCGATTACGTTCTCA
AGCGAAACTGAGTTCGTCCAAAATGTGGCAGGGGTCTGGTTTCCTTAGCG
GCGGGGCACTTTTTCTGGCGGGTTCAGACGTCACTGCTACTGGCCGGCTC
GAGTTCATCGGGAATGCTGCCCAGCAGGGCGGGGCGGTCTACATGGAAGC
CAGCACCCTCGCGTTTGATGGATCTCTTCTTTTCGCCAACAACACGGGCT
TTGGAGACGGCGGCGCTATCTGGGGCGCAGGCTCAGACATGAGCGTTGCG
GGGAACGTCGTATTCACAGGAAATAAGGCGGACTTTTCGGGTGGGGCCAT
GTTCATTACGACCTCATCGATTACGTTCTCAAGCGAAACTGAGTTCGTCC
AAAATGTGGCAGTTTGCGCCGTGTGTGCAGACGGCTACACGACAGGTGCA
GGGTACACGTGCGCGAAGTGCACGGACGGTCGCCGGGACGCTACCATTGC
CGTCATATCGGTTGTGCTCCTTCTTGCGGCTGTGCTGGCGGTGGCCGCCC
GCATCAAGTACCTGCAATCGGAGTCCGAACAGACGCTAGCCGGGGGAAGC
GTTGCCAGGCGAGGGTTAGCAAGGATCAGGTCGCGCTTGAAACGCTCAAA
AGGGGCCCAAACACTCAAGATCATCGTCTCGTATCATGGCAAATCATCAC
TCAGGTAATTTGCGCCGTGTGTGCAGACGGCTACACGACAGGTGCAGGGT
ACACGTGCGCGAAGTGCACGGACGGTCGCCGGGACGCTACCATTGCCGTC
ATATCGGTTGTGCTCCTTCTTGCGGCTGTGCTGGCGGTGGCCGCCCGCAT
CAAGTACCTGCAATCGGAGTCCGAACAGACGCTAGCCGGGGGAAGCGTTG
CCAGGCGAGGGTTAGCAAGGATCAGGTCGCGCTTGAAACGCTCAAAAGGG
GCCCAAACACTCAAGATCATCGTCTCGTATCATGGCAAATCATCACTCAG
GTAA
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