mRNA_L-elsbetiae_contig9136.18166.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9136.18166.1
Unique NamemRNA_L-elsbetiae_contig9136.18166.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9136.18166.1 vs. uniprot
Match: D7FX81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX81_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.250e-6
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:  136 MGNMCTNAQGADDRRRKPDSRRKSSGSTTGFSPTEEIAY 252
            MGN+CT+ + A+D RR+PDSRRK SGSTTGFSPTE++ Y
Sbjct:    1 MGNLCTSTKSANDGRRQPDSRRKGSGSTTGFSPTEDLGY 39
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BLAST of mRNA_L-elsbetiae_contig9136.18166.1 vs. uniprot
Match: A0A6H5JVK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.820e-5
Identity = 26/39 (66.67%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:  136 MGNMCTNAQGADDRRRKPDSRRKSSGSTTGFSPTEEIAY 252
            MGN+CT+ + A+D RR+PDSRRK SGSTTGFSPTE++ +
Sbjct:    1 MGNLCTSTKSANDGRRQPDSRRKGSGSTTGFSPTEDLGH 39
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9136.18166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX81_ECTSI1.250e-669.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVK9_9PHAE1.820e-566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9136contigL-elsbetiae_contig9136:6261..7559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1299
Cds size1164
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816988.360365-UTR-L-elsbetiae_contig9136:6260..63951622816988.360365-UTR-L-elsbetiae_contig9136:6260..6395Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9136 6261..6395 +
1691683964.098108-UTR-L-elsbetiae_contig9136:6260..63951691683964.098108-UTR-L-elsbetiae_contig9136:6260..6395Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9136 6261..6395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816988.3707001-CDS-L-elsbetiae_contig9136:6395..75591622816988.3707001-CDS-L-elsbetiae_contig9136:6395..7559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9136 6396..7559 +
1691683964.1100166-CDS-L-elsbetiae_contig9136:6395..75591691683964.1100166-CDS-L-elsbetiae_contig9136:6395..7559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9136 6396..7559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9136.18166.1prot_L-elsbetiae_contig9136.18166.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9136 6396..7559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9136.18166.1

>prot_L-elsbetiae_contig9136.18166.1 ID=prot_L-elsbetiae_contig9136.18166.1|Name=mRNA_L-elsbetiae_contig9136.18166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=388bp
MGNMCTNAQGADDRRRKPDSRRKSSGSTTGFSPTEEIAYAAAGEQNGAAA
EGAPSSAPANGVRTGPVSASEVDVHTGGDPSRDKRDGGAYANGDPPLNTS
RRGSATSALAAPGAAAAAEVAAATDVGDVLGSPSRGAGDAGGGDRESRRR
RDSTRSSKDGGGGGGGEERRRSSRRSKSSRKDKDGASVGNGGESRSSRGR
ENGGSSRRRDSESGRRPRTERTEKEIAERKEQRRRERAARSSANGGDPEA
EEARRERRERRERRKRKEAEAAEAAAEEEAAASGGGVNGGVPEGGAEPAA
AAAEAAAVEGDEDASGAAAGVLEGSNDSGKDGRKGSGRRSGDTRYSASGG
GSRERGSTGVSGVMAGSGGSAAAADHGEKKKRSSSLRK
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mRNA from alignment at L-elsbetiae_contig9136:6261..7559+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9136.18166.1 ID=mRNA_L-elsbetiae_contig9136.18166.1|Name=mRNA_L-elsbetiae_contig9136.18166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1299bp|location=Sequence derived from alignment at L-elsbetiae_contig9136:6261..7559+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAAGAGAGGTGGAAGAGAGAGGGGTGACACATTTCGCAAAAGTCGGAA
ACCAAGGGTGAGGAGTGCAGACTTGGGGGAACAAAATAAGCCACGCAGGC
AAGCGAGGGACTCCAGCAACGGTATCTAGCCAGCCATGGGCAACATGTGC
ACCAACGCGCAAGGCGCGGACGACCGGCGAAGAAAACCGGATTCGCGAAG
AAAAAGCTCCGGGTCCACTACAGGCTTCTCCCCCACGGAGGAGATTGCGT
ACGCCGCCGCCGGCGAACAAAACGGCGCAGCCGCCGAAGGAGCACCCTCG
TCAGCACCAGCAAATGGGGTCAGAACCGGCCCGGTGTCCGCCTCGGAGGT
AGACGTGCACACGGGCGGCGACCCGAGCCGAGATAAACGAGACGGCGGCG
CCTATGCAAACGGGGACCCCCCGCTCAACACAAGCAGGCGAGGCTCCGCC
ACCTCGGCATTGGCGGCGCCCGGAGCAGCGGCAGCAGCAGAGGTAGCAGC
AGCTACGGACGTGGGTGATGTTCTTGGCTCTCCAAGCAGGGGTGCCGGCG
ATGCCGGCGGTGGGGACCGGGAGTCCAGGCGGCGCCGCGACTCCACCCGC
AGCAGCAAGGACGGCGGCGGCGGCGGCGGCGGCGAGGAGCGGCGCCGCTC
CTCCCGGCGGTCCAAGTCCTCCCGGAAGGACAAGGACGGCGCCAGCGTCG
GCAACGGCGGGGAGAGCAGATCATCGAGGGGCCGCGAGAACGGCGGCTCC
TCGCGGCGGCGGGACAGCGAGAGCGGCCGGCGACCGCGGACGGAGCGCAC
GGAGAAGGAGATCGCCGAGCGCAAGGAGCAGCGGCGGCGGGAGCGCGCCG
CCCGCAGCTCCGCCAACGGCGGCGACCCGGAGGCGGAGGAGGCCCGCAGG
GAGAGGCGCGAGAGGAGGGAGCGCCGAAAGAGAAAGGAGGCGGAGGCAGC
GGAGGCGGCGGCGGAGGAGGAGGCCGCGGCATCCGGAGGAGGGGTGAACG
GCGGGGTACCAGAAGGCGGAGCAGAACCGGCGGCGGCGGCGGCGGAAGCG
GCAGCAGTAGAAGGCGATGAGGATGCGTCGGGGGCCGCCGCCGGTGTCCT
GGAGGGCAGCAACGACAGCGGCAAGGACGGCCGCAAGGGAAGCGGCAGGA
GGTCGGGCGACACCAGGTACTCGGCTTCCGGCGGCGGCTCGAGGGAGCGT
GGGAGCACGGGCGTCTCGGGGGTGATGGCTGGGTCCGGGGGCTCGGCGGC
GGCCGCCGATCACGGCGAGAAGAAGAAGCGCAGCTCTTCTCTTCGAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9136:6261..7559+

>mRNA_L-elsbetiae_contig9136.18166.1 ID=mRNA_L-elsbetiae_contig9136.18166.1|Name=mRNA_L-elsbetiae_contig9136.18166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2328bp|location=Sequence derived from alignment at L-elsbetiae_contig9136:6261..7559+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCAACATGTGCACCAACGCGCAAGGCGCGGACGACCGGCGAAGAAA
ACCGGATTCGCGAAGAAAAAGCTCCGGGTCCACTACAGGCTTCTCCCCCA
CGGAGGAGATTGCGTACGCCGCCGCCGGCGAACAAAACGGCGCAGCCGCC
GAAGGAGCACCCTCGTCAGCACCAGCAAATGGGGTCAGAACCGGCCCGGT
GTCCGCCTCGGAGGTAGACGTGCACACGGGCGGCGACCCGAGCCGAGATA
AACGAGACGGCGGCGCCTATGCAAACGGGGACCCCCCGCTCAACACAAGC
AGGCGAGGCTCCGCCACCTCGGCATTGGCGGCGCCCGGAGCAGCGGCAGC
AGCAGAGGTAGCAGCAGCTACGGACGTGGGTGATGTTCTTGGCTCTCCAA
GCAGGGGTGCCGGCGATGCCGGCGGTGGGGACCGGGAGTCCAGGCGGCGC
CGCGACTCCACCCGCAGCAGCAAGGACGGCGGCGGCGGCGGCGGCGGCGA
GGAGCGGCGCCGCTCCTCCCGGCGGTCCAAGTCCTCCCGGAAGGACAAGG
ACGGCGCCAGCGTCGGCAACGGCGGGGAGAGCAGATCATCGAGGGGCCGC
GAGAACGGCGGCTCCTCGCGGCGGCGGGACAGCGAGAGCGGCCGGCGACC
GCGGACGGAGCGCACGGAGAAGGAGATCGCCGAGCGCAAGGAGCAGCGGC
GGCGGGAGCGCGCCGCCCGCAGCTCCGCCAACGGCGGCGACCCGGAGGCG
GAGGAGGCCCGCAGGGAGAGGCGCGAGAGGAGGGAGCGCCGAAAGAGAAA
GGAGGCGGAGGCAGCGGAGGCGGCGGCGGAGGAGGAGGCCGCGGCATCCG
GAGGAGGGGTGAACGGCGGGGTACCAGAAGGCGGAGCAGAACCGGCGGCG
GCGGCGGCGGAAGCGGCAGCAGTAGAAGGCGATGAGGATGCGTCGGGGGC
CGCCGCCGGTGTCCTGGAGGGCAGCAACGACAGCGGCAAGGACGGCCGCA
AGGGAAGCGGCAGGAGGTCGGGCGACACCAGGTACTCGGCTTCCGGCGGC
GGCTCGAGGGAGCGTGGGAGCACGGGCGTCTCGGGGGTGATGGCTGGGTC
CGGGGGCTCGGCGGCGGCCGCCGATCACGGCGAGAAGAAGAAGCGCAGCT
CTTCTCTTCGAAAGATGGGCAACATGTGCACCAACGCGCAAGGCGCGGAC
GACCGGCGAAGAAAACCGGATTCGCGAAGAAAAAGCTCCGGGTCCACTAC
AGGCTTCTCCCCCACGGAGGAGATTGCGTACGCCGCCGCCGGCGAACAAA
ACGGCGCAGCCGCCGAAGGAGCACCCTCGTCAGCACCAGCAAATGGGGTC
AGAACCGGCCCGGTGTCCGCCTCGGAGGTAGACGTGCACACGGGCGGCGA
CCCGAGCCGAGATAAACGAGACGGCGGCGCCTATGCAAACGGGGACCCCC
CGCTCAACACAAGCAGGCGAGGCTCCGCCACCTCGGCATTGGCGGCGCCC
GGAGCAGCGGCAGCAGCAGAGGTAGCAGCAGCTACGGACGTGGGTGATGT
TCTTGGCTCTCCAAGCAGGGGTGCCGGCGATGCCGGCGGTGGGGACCGGG
AGTCCAGGCGGCGCCGCGACTCCACCCGCAGCAGCAAGGACGGCGGCGGC
GGCGGCGGCGGCGAGGAGCGGCGCCGCTCCTCCCGGCGGTCCAAGTCCTC
CCGGAAGGACAAGGACGGCGCCAGCGTCGGCAACGGCGGGGAGAGCAGAT
CATCGAGGGGCCGCGAGAACGGCGGCTCCTCGCGGCGGCGGGACAGCGAG
AGCGGCCGGCGACCGCGGACGGAGCGCACGGAGAAGGAGATCGCCGAGCG
CAAGGAGCAGCGGCGGCGGGAGCGCGCCGCCCGCAGCTCCGCCAACGGCG
GCGACCCGGAGGCGGAGGAGGCCCGCAGGGAGAGGCGCGAGAGGAGGGAG
CGCCGAAAGAGAAAGGAGGCGGAGGCAGCGGAGGCGGCGGCGGAGGAGGA
GGCCGCGGCATCCGGAGGAGGGGTGAACGGCGGGGTACCAGAAGGCGGAG
CAGAACCGGCGGCGGCGGCGGCGGAAGCGGCAGCAGTAGAAGGCGATGAG
GATGCGTCGGGGGCCGCCGCCGGTGTCCTGGAGGGCAGCAACGACAGCGG
CAAGGACGGCCGCAAGGGAAGCGGCAGGAGGTCGGGCGACACCAGGTACT
CGGCTTCCGGCGGCGGCTCGAGGGAGCGTGGGAGCACGGGCGTCTCGGGG
GTGATGGCTGGGTCCGGGGGCTCGGCGGCGGCCGCCGATCACGGCGAGAA
GAAGAAGCGCAGCTCTTCTCTTCGAAAG
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