mRNA_L-elsbetiae_contig9134.18164.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9134.18164.1
Unique NamemRNA_L-elsbetiae_contig9134.18164.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9134.18164.1 vs. uniprot
Match: D8LSS0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS0_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 7.660e-76
Identity = 135/215 (62.79%), Postives = 155/215 (72.09%), Query Frame = 1 
Query:   46 MIEGQAGGSLEAAAAGEEDESGALLPSSPAPLHRGRIA-LFAGMLAVALLVGYVSSPRASVRGTAGTAAAAAASPIQASTNSIPSCSLMSCTGSGCDWDGAPFLCLEGGSSNGCADKASTWSEGDSCTSFCDLSGCADTLEKAGADGGEDLPRRCLDCDEKQCSKLAEQWSQACGKAAPFMCLSGAATWGCADNELAWASAPATTCGECCDVGGC 687
            MI+  AG     AAA E  E G+L+  +  P  +G +    A  + VALL+    S   +    +  AA AAA+P+QAST+S+PSCSL+SCT SGCDWDGAPFLCL+GGS+ GCAD ASTWS GD CTSFCDLSGCADTLE  G D   DLPRRCL+CDE QCS LA   SQACG   PF+CLSGAATWGCADNELAWAS P+TTCGECCDV GC
Sbjct:    1 MIQAGAG-----AAALERGEEGSLIAGTE-PRRKGWVVPALAAAVGVALLLACGLSAHHAREDAS--AAGAAATPMQASTDSVPSCSLLSCTSSGCDWDGAPFLCLDGGSAGGCADSASTWSGGDGCTSFCDLSGCADTLENTGVD---DLPRRCLECDETQCSNLAGHPSQACGSTVPFVCLSGAATWGCADNELAWASTPSTTCGECCDVSGC 204
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9134.18164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSS0_ECTSI7.660e-7662.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9134contigL-elsbetiae_contig9134:3071..7186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.7
Seed ortholog evalue5.2e-63
Seed eggNOG ortholog2880.D8LSS0
Hectar predicted targeting categoryother localisation
EggNOG OGs2E594@1,2SC37@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_002830.1
Exons3
Model size1214
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9134.18164.1prot_L-elsbetiae_contig9134.18164.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9134 3095..6662 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816988.246237-UTR-L-elsbetiae_contig9134:3070..30941622816988.246237-UTR-L-elsbetiae_contig9134:3070..3094Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9134 3071..3094 +
1691683964.017418-UTR-L-elsbetiae_contig9134:3070..30941691683964.017418-UTR-L-elsbetiae_contig9134:3070..3094Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9134 3071..3094 +
1622816988.2893167-UTR-L-elsbetiae_contig9134:6662..71861622816988.2893167-UTR-L-elsbetiae_contig9134:6662..7186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9134 6663..7186 +
1691683964.065553-UTR-L-elsbetiae_contig9134:6662..71861691683964.065553-UTR-L-elsbetiae_contig9134:6662..7186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9134 6663..7186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816988.2584686-CDS-L-elsbetiae_contig9134:3094..33081622816988.2584686-CDS-L-elsbetiae_contig9134:3094..3308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9134 3095..3308 +
1691683964.0306833-CDS-L-elsbetiae_contig9134:3094..33081691683964.0306833-CDS-L-elsbetiae_contig9134:3094..3308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9134 3095..3308 +
1622816988.268536-CDS-L-elsbetiae_contig9134:5354..54961622816988.268536-CDS-L-elsbetiae_contig9134:5354..5496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9134 5355..5496 +
1691683964.0409458-CDS-L-elsbetiae_contig9134:5354..54961691683964.0409458-CDS-L-elsbetiae_contig9134:5354..5496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9134 5355..5496 +
1622816988.2782326-CDS-L-elsbetiae_contig9134:6352..66621622816988.2782326-CDS-L-elsbetiae_contig9134:6352..6662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9134 6353..6662 +
1691683964.0527449-CDS-L-elsbetiae_contig9134:6352..66621691683964.0527449-CDS-L-elsbetiae_contig9134:6352..6662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9134 6353..6662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9134.18164.1

>prot_L-elsbetiae_contig9134.18164.1 ID=prot_L-elsbetiae_contig9134.18164.1|Name=mRNA_L-elsbetiae_contig9134.18164.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp
MTKQTYEMIEGQAGGSLEAAAAGEEDESGALLPSSPAPLHRGRIALFAGM
LAVALLVGYVSSPRASVRGTAGTAAAAAASPIQASTNSIPSCSLMSCTGS
GCDWDGAPFLCLEGGSSNGCADKASTWSEGDSCTSFCDLSGCADTLEKAG
ADGGEDLPRRCLDCDEKQCSKLAEQWSQACGKAAPFMCLSGAATWGCADN
ELAWASAPATTCGECCDVGGC*
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mRNA from alignment at L-elsbetiae_contig9134:3071..7186+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9134.18164.1 ID=mRNA_L-elsbetiae_contig9134.18164.1|Name=mRNA_L-elsbetiae_contig9134.18164.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4116bp|location=Sequence derived from alignment at L-elsbetiae_contig9134:3071..7186+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGAGTGGACATAAGCTGAGACCATGACGAAGCAAACGTACGAGATGAT
CGAGGGGCAGGCAGGAGGAAGCCTCGAAGCCGCAGCAGCGGGAGAGGAAG
ACGAAAGTGGTGCATTGCTGCCGTCGAGCCCTGCGCCGCTGCACAGGGGA
CGGATTGCTCTCTTCGCGGGAATGCTGGCGGTTGCTCTGCTCGTGGGATA
CGTCTCTTCTCCGCGTGCGTCTGTGCGCGGCACAGCAGGTACACATGTTT
ACCTATAAGTCTATGTATGCACAGCAGTAGTCCAAGTAGTCACCTAACTG
CTCGGCATATTTTGACGGTCCTACCCAGCGGTGATCTACCCGTAGCAAGT
AGACTGTGTCTAATATTTTCATACGATACGAGTATTTTCCATTGGTTTGA
CACGAACTACAACTTCAAGTGGGTTGTTCGGATGTTCATGAAAGATACAC
AACAGAGAGGCGATCTGACAGTTGGCGAAAATCGGGCAACGCTGGCCAAC
TTTGTGCCTTTGTGTGGTGCATTTGGGGTGCGCGGGAATGTCTTTGGCGG
CGTGGGTTGATCAAGTAATAACCCATGATATGTTCGAGCCATTGGTGAAT
TTGCAGCATACCGACGGTGACAGGGGACCTTTCCTGTGGCCGACGGGTGA
ACACGTGAACACACCACGCGTTTTTGCCGTGTCAAAAATGGTTTAGCTTT
TATGTGGTCCATCTAGTCTGTGAATGCTTGCGTCTTTCTGCTGTACAGTC
AGTAGCATCAACATCAGATTCACCGCATTTCCGAGACGAAACACAACATT
TTACTAGACTACTACCTAGACTAGTCATCTACTTCCTCTGTCCACGAATA
TAAGCTCGCTCAGAGAAAAAGTGGCCTATCTCGGGCCCATGTGACTCTTT
TTTAGAACTTTTTTTTCACCGGTTTCGTGGCATTCACGCCGAACCGCCAA
AACCGATGCTTTTTCAATCATCCACCAAAATAGTGTGTCCCACCCCAGCT
GAAGTCGTCGAAAATCACTACCCCAACTTTGAACCTCCGGTTGAAGGTGA
TCGAAACTTTTTTTGTTTTGCTTTTTTTACATCGGAATTGGAATTTTGTC
CTGAGTCCAAAAAGCCAATAAAAAAAGTGGTCACAAAAAAACTGCAACCA
CCACCGGCATTTTTCAATCCCTCGTTTTTTTCGATATTCCTTGTATAGAG
CGATTTGTAGGTGGCCAAATCACTTTTTAAAATGCGGAGAACGCCCGTAC
TGCTTTCGCGATTGCGCTCGTAAAAAAACAAGTTTGAAAAAAACAAGTTT
GAAAAATATGTTTTTTTATTCAACCGAATTTGTACTTTTCTTTAGAAAAA
AAAACATTTTTTTCAAACTTGTTTTTTACGAGCGCAATCGCGAGAACAGC
ACGGGCGTTCTCCGCATTCTGAAAAGTGATTTGACCACCTACAAATCACT
CTATTCAAGAAATATCGAAAAAAACGGGGGATTGAAGAATGCCGGTGGTG
GTTGCAGTTTTTTTGTGACCATGTACTAGATATCTACGTATCATAGCCAT
GTACATGTGTATCCATGAGCTAGTATCCATATTTACCCCAAGGGTGGATC
CCACCACCTGCCGCCAACGACACTTGATGTTCGGGGGAGCATAGATAGGG
GTGTCGATTCCACATCGTGTTGTCGTCGGGTTCACTTCAGATCTATGGAT
GGCTTCTGAGAGCAGTACTGATCACAGTATGAGCCTGGGACAGAGGGCTT
TTCGACAAAGCAGTTACTGTACAGGTACTGTACAGTATTTAGGAAATAAA
ATGTATTTTTGATTAACTGTTTTATCTTTCAAAATGCTAGACGGGACATC
CGTCCAATCCCCCCCCCACCCCACACACACACACACCACCCTTCGCTCTT
TTCCCTTCTCTCTTGCACCAGCACGAATGCGCGTCTTACCGCCTTTCTAT
ATCCATCCCTGTGCGAGACCCCGGCTTGAGTTTTAAACCAGGTTGCTTTA
TGTTTTTCTTCTTCTTGACATTTATTTTCAGTGCTCGATGGGCAGTACTG
AACTGTGGTCACACAGAAGGGTTCCTTCTCCCAAGGCCCTCACTCCCTCC
GTCCGCGGTGCTTGCCTAAGATTTTTGTCGCGAGAAGGGTTCAGCCGTCC
CTTTCCCTTGTCGACGGTGAGGTCGAAGTTTGCACTGCGCGGTACGAAGT
GAGGTTGTTTGTTGTCTACGACGAACTGCAAGCGTGGCTACGAAAATATC
TTTGAAAGCGGAGCCCATCCCTCTCCGCCACCAGGCACTGCTGCCGCTGC
GGCAGCGAGCCCCATACAAGCCTCGACGAACAGCATCCCTTCCTGCAGCC
TGATGTCGTGCACGGGCTCTGGCTGCGACTGGGATGGCGCCCCATTCCTC
TGCCTGGAAGGCGGCTCCTCCAATGGGTGGGTCAGTGTGTGTGTGTCATG
CATGCTCATATTGTTTGCTGCTTGCGACGGAAGCTACATACACGTATCTT
GCATGTAGAAAACTAAACGGATAATTAAGTCGTGTTTTTATGTGTTGTAG
ACGAAACCTGAAACCTTCATTTCAGTTTGTGTTGGGATCTGTGTCTATCT
CCCCTGTGTGCTTATCTCGGACAGCTTTTTTCGTGCTGCCTACTGTTATC
GAACATGAAGCAGTTATCTATGCAGAGGCTCTTGTTTGTGACCCTGCACA
TCCACGTATGCTTTCGAGATTTTGAGAAAACCACCTCGAAAGACTTCACA
GCAGTTCCGCAAATGACTCAAAACATACCTGTCGTGCCTGTTGAGATGCT
TGCATTTTTCGTGAGTGCTGGTGTCTTTCTTTGCCTGCTAGAAAGCAAGC
TTGGGTTGTTGCCGTCGTTGGAGCTCTTTACCATACTATGGAAGCGAATG
GAAGAAGTAGTACTACACCAGCCAGCGGTAGCACCCCTAAAACACATCTC
GGATATCGTCTGCCAAATGCTTACATGCCCCCACGCTTGAGGCAATCTCG
ACAGCGCTTCTTCCAAACCCCTTCGCGTTGCAACCTTGTGTACCACGCCG
CCAAAACAAGAGGCGGGTTTCTTCCCGAAATACATGCTGTATGACCTGGT
AGAGTTGTGCAGGGGAGGTGATGAACTTTTTCAATATTTTATGTGTTTTT
CTACTGGGCTGGACCAATATTACGTCACTACCATATACAATATGGAATAC
CGATGGAATCTCACGGGAGTCCCGCCTCCAATGTGGGTTAGGTTCCGTTT
CTGACTAACTGTTTTTCAACCATTCACAACAGGTGCGCCGACAAGGCCTC
CACCTGGTCGGAAGGGGACAGCTGCACCTCATTCTGCGACCTCTCCGGCT
GCGCCGACACCCTCGAGAAGGCCGGCGCGGACGGGGGAGAAGACCTGCCG
CGCCGCTGCCTGGACTGCGACGAGAAGCAGTGCTCGAAGCTGGCCGAGCA
GTGGTCGCAGGCGTGCGGCAAGGCGGCGCCGTTCATGTGTCTCTCCGGCG
CGGCGACCTGGGGCTGCGCGGACAACGAGCTGGCCTGGGCGTCCGCCCCC
GCTACCACGTGTGGGGAATGTTGCGACGTCGGCGGGTGCTGAGTTTTAGC
TCTGGGGAGAGGTGGACGGGTGGAAGTGCGTGCGGGGTTGACTGGCCCTG
GATGCGCACTGGTTGGTTCGGGCTTACTCTGCTGAAGTGATTGACCGGAG
GCTTCATTGTAGGATTTTTGATAAATACCGTGTCGGGGACAGCACAGTGT
GTCCTTAACCTTGAAAGGAGATTCATAGCGGCAGTGGGCAGTTGCTTCAT
CGGCTGCCAGTTTTGTCTAGAAGATAGAGTGGAAAAGAGTTTTTTTGTGA
TGATCGGGAATATAGAGTGCTCTGTGTTTGGGCAGATATTTAAGTAGTAT
TTAGGAGGTGGGTGGCCTGGAATGAGTCAAACACGCAGTCGTTGTAGGTG
CCGTACGGTGGTGGCGTGAACCATGTCGTGTGTCTCTGTGTTTTTATGTG
CTGTTGGAGGACGGTTGTCAGGCATCGCTACCCAAACACCGACATCACAG
AGAATATCGGCTTGAGCTGTGGGTCTTGCCGTTTGCGATGGGAGTGTATG
GATCATCTCGTAAATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9134:3071..7186+

>mRNA_L-elsbetiae_contig9134.18164.1 ID=mRNA_L-elsbetiae_contig9134.18164.1|Name=mRNA_L-elsbetiae_contig9134.18164.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig9134:3071..7186+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGAAGCAAACGTACGAGATGATCGAGGGGCAGGCAGGAGGAAGCCT
CGAAGCCGCAGCAGCGGGAGAGGAAGACGAAAGTGGTGCATTGCTGCCGT
CGAGCCCTGCGCCGCTGCACAGGGGACGGATTGCTCTCTTCGCGGGAATG
CTGGCGGTTGCTCTGCTCGTGGGATACGTCTCTTCTCCGCGTGCGTCTGT
GCGCGGCACAGCAGATGACGAAGCAAACGTACGAGATGATCGAGGGGCAG
GCAGGAGGAAGCCTCGAAGCCGCAGCAGCGGGAGAGGAAGACGAAAGTGG
TGCATTGCTGCCGTCGAGCCCTGCGCCGCTGCACAGGGGACGGATTGCTC
TCTTCGCGGGAATGCTGGCGGTTGCTCTGCTCGTGGGATACGTCTCTTCT
CCGCGTGCGTCTGTGCGCGGCACAGCAGGCACTGCTGCCGCTGCGGCAGC
GAGCCCCATACAAGCCTCGACGAACAGCATCCCTTCCTGCAGCCTGATGT
CGTGCACGGGCTCTGGCTGCGACTGGGATGGCGCCCCATTCCTCTGCCTG
GAAGGCGGCTCCTCCAATGGGCACTGCTGCCGCTGCGGCAGCGAGCCCCA
TACAAGCCTCGACGAACAGCATCCCTTCCTGCAGCCTGATGTCGTGCACG
GGCTCTGGCTGCGACTGGGATGGCGCCCCATTCCTCTGCCTGGAAGGCGG
CTCCTCCAATGGGTGCGCCGACAAGGCCTCCACCTGGTCGGAAGGGGACA
GCTGCACCTCATTCTGCGACCTCTCCGGCTGCGCCGACACCCTCGAGAAG
GCCGGCGCGGACGGGGGAGAAGACCTGCCGCGCCGCTGCCTGGACTGCGA
CGAGAAGCAGTGCTCGAAGCTGGCCGAGCAGTGGTCGCAGGCGTGCGGCA
AGGCGGCGCCGTTCATGTGTCTCTCCGGCGCGGCGACCTGGGGCTGCGCG
GACAACGAGCTGGCCTGGGCGTCCGCCCCCGCTACCACGTGTGGGGAATG
TTGCGACGTCGGCGGGTGCTGAGTGCGCCGACAAGGCCTCCACCTGGTCG
GAAGGGGACAGCTGCACCTCATTCTGCGACCTCTCCGGCTGCGCCGACAC
CCTCGAGAAGGCCGGCGCGGACGGGGGAGAAGACCTGCCGCGCCGCTGCC
TGGACTGCGACGAGAAGCAGTGCTCGAAGCTGGCCGAGCAGTGGTCGCAG
GCGTGCGGCAAGGCGGCGCCGTTCATGTGTCTCTCCGGCGCGGCGACCTG
GGGCTGCGCGGACAACGAGCTGGCCTGGGCGTCCGCCCCCGCTACCACGT
GTGGGGAATGTTGCGACGTCGGCGGGTGCTGA
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