mRNA_L-elsbetiae_contig9131.18162.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9131.18162.1
Unique NamemRNA_L-elsbetiae_contig9131.18162.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9131.18162.1 vs. uniprot
Match: D7G8X0_ECTSI (Mitochondrial carrier protein-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X0_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.840e-7
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   76 LAYIVADDGWKGLDAGSQPRVVMSGLFTAIG 168
            +A IVADDGWKGL AG QPRVVMSGLFTA+G
Sbjct:  279 MATIVADDGWKGLYAGFQPRVVMSGLFTAVG 309
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BLAST of mRNA_L-elsbetiae_contig9131.18162.1 vs. uniprot
Match: A0A6H5JI22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI22_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.950e-7
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   76 LAYIVADDGWKGLDAGSQPRVVMSGLFTAIG 168
            +A IVADDGWKGL AG QPRVVMSGLFTA+G
Sbjct:  407 MATIVADDGWKGLYAGFQPRVVMSGLFTAVG 437
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9131.18162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8X0_ECTSI1.840e-783.87Mitochondrial carrier protein-like n=1 Tax=Ectocar... [more]
A0A6H5JI22_9PHAE1.950e-783.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9131contigL-elsbetiae_contig9131:2377..3791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size276
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9131.18162.1prot_L-elsbetiae_contig9131.18162.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9131 2377..3791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816988.1376512-CDS-L-elsbetiae_contig9131:2376..24941622816988.1376512-CDS-L-elsbetiae_contig9131:2376..2494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9131 2377..2494 +
1691683963.9574566-CDS-L-elsbetiae_contig9131:2376..24941691683963.9574566-CDS-L-elsbetiae_contig9131:2376..2494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9131 2377..2494 +
1622816988.1517687-CDS-L-elsbetiae_contig9131:3008..30521622816988.1517687-CDS-L-elsbetiae_contig9131:3008..3052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9131 3009..3052 +
1691683963.9685495-CDS-L-elsbetiae_contig9131:3008..30521691683963.9685495-CDS-L-elsbetiae_contig9131:3008..3052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9131 3009..3052 +
1622816988.1678457-CDS-L-elsbetiae_contig9131:3677..37911622816988.1678457-CDS-L-elsbetiae_contig9131:3677..3791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9131 3678..3791 +
1691683963.9790037-CDS-L-elsbetiae_contig9131:3677..37911691683963.9790037-CDS-L-elsbetiae_contig9131:3677..3791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9131 3678..3791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9131.18162.1

>prot_L-elsbetiae_contig9131.18162.1 ID=prot_L-elsbetiae_contig9131.18162.1|Name=mRNA_L-elsbetiae_contig9131.18162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MSVFCWLERSDQVPGRRSGLREEHRLAYIVADDGWKGLDAGSQPRVVMSG
LFTAIGHVQREVQQRDGAGTRRANQDPRTSKCRGFAELRMLG
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mRNA from alignment at L-elsbetiae_contig9131:2377..3791+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9131.18162.1 ID=mRNA_L-elsbetiae_contig9131.18162.1|Name=mRNA_L-elsbetiae_contig9131.18162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1415bp|location=Sequence derived from alignment at L-elsbetiae_contig9131:2377..3791+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGTTTTCTGCTGGTTAGAACGGAGCGACCAGGTCCCTGGACGGCG
ATCGGGGCTCCGTGAAGAGCATCGACTGGCGTATATCGTGGCAGACGACG
GCTGGAAGGGCCTGGACGGTGAGGTGAACAAAACAGCGGAGCGTCAGACC
CACGTGGATTTTGGGTGCCCAACCATCGAAACGAATTTGCTTGTGCTCTT
CGACCCCACTGGGTTTGACGCGATTGCGCTGTCTTCGTGAAGGCTCCTCG
TGTCTCGGTGGCATTGTTTTGGGCGCTTTGCCGCCACCTTCCTAACCACC
AACGGTGACGATAAGGTGCACCATCCTCATTGAGTACTGTCTCGAACCCA
TACGACCGTTGATCATTGTTTTTTTTTTGTGTTTGTCTAGTCCGGCTATT
CACATATTAACAACATGTCTGTAGCGTGCATGCCCGCCGGCTGCCTCATG
AACATCAATACCAAAGGCGCATGTGCGCGGGAGCGACCAGCATCCACATG
CAGCAGTAGCAGCAGCAGTAGCAGCGGCACATTCAAGCGTATTAGACACC
ATCCTTCCCGACCCCTACTCGTCTCCTCGCTGCAATCCCCTGCACCGCTT
ACAATGGGCACAAAAACGGGCTTCCGTCACAGCTGGTTCCCAACCTCGCG
TGGTGATGTCGGGACTTTTCACGGCGGTGAGTTTGGTGCCTTTTGGGGCT
CTCAAGTCGTACTCGGGGTCTTGCCGTTACTATCAACAACGGACACCAAA
CACCAATACCAACAGCTCGGCCACGGCGACCGCTTCAGCATCTGGGAGAC
CAAATACAAGAGATCGTTGAGGCTGCGGTGAAAATCACGTACGCTCGAGG
GGTGGGTGGATGGGCGGGTGGGTGGCAGTGCTGTACGTATTAAGGGGGTA
CTTCGCCATACCTTCCCAAGAAAAGATAAACCCTGAAATGTTCCAACTAT
TTGATGCTGCACCAGAGGGGGGAAATCCGTGTGTGGATGATAACTTTCGC
GGTTCCTCGCACGGCTTTGTTTAATGGGCTTTTGGTCTTTGCGTTGCCAC
AAAAAAAGCCATCAAGAATGTTCATTCGCGCCATCCTTGCCCGTATATAG
AGTTGAATGGAGACCTGGCAGCACTGGGATACCACTGTCTTGGTCGCCGA
TGGGCTCTGCGACAGGGCGGCCAAGCAGCTTTTCTTGCTTTCGTGATTTT
AATGATTTTCATTTTCAGGTGTTTTTCCTTGTTTGGATAGTTGCAGCTCA
GTGCGGCACATCACCCGCTAAATGCATCGTTCTATGTATGCTCGACGGCA
GATAGGACACGTTCAGAGGGAAGTGCAGCAGAGAGATGGAGCGGGGACCC
GACGTGCCAACCAGGACCCACGAACATCGAAGTGTAGGGGTTTTGCTGAA
TTGCGAATGTTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9131:2377..3791+

>mRNA_L-elsbetiae_contig9131.18162.1 ID=mRNA_L-elsbetiae_contig9131.18162.1|Name=mRNA_L-elsbetiae_contig9131.18162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig9131:2377..3791+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGTTTTCTGCTGGTTAGAACGGAGCGACCAGGTCCCTGGACGGCG
ATCGGGGCTCCGTGAAGAGCATCGACTGGCGTATATCGTGGCAGACGACG
GCTGGAAGGGCCTGGACGATGTCAGTTTTCTGCTGGTTAGAACGGAGCGA
CCAGGTCCCTGGACGGCGATCGGGGCTCCGTGAAGAGCATCGACTGGCGT
ATATCGTGGCAGACGACGGCTGGAAGGGCCTGGACGCTGGTTCCCAACCT
CGCGTGGTGATGTCGGGACTTTTCACGGCGCTGGTTCCCAACCTCGCGTG
GTGATGTCGGGACTTTTCACGGCGATAGGACACGTTCAGAGGGAAGTGCA
GCAGAGAGATGGAGCGGGGACCCGACGTGCCAACCAGGACCCACGAACAT
CGAAGTGTAGGGGTTTTGCTGAATTGCGAATGTTGGGGATAGGACACGTT
CAGAGGGAAGTGCAGCAGAGAGATGGAGCGGGGACCCGACGTGCCAACCA
GGACCCACGAACATCGAAGTGTAGGGGTTTTGCTGAATTGCGAATGTTGG
GG
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