mRNA_L-elsbetiae_contig9121.18153.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9121.18153.1
Unique NamemRNA_L-elsbetiae_contig9121.18153.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9121.18153.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 8.690e-12
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:   10 LHVILREGMPTRLWMG-APARETRSAKILNATRVPVVRAREVTWNLRASALRNM-GNSFSKAKRFTFGDEFNGSV-RGVAWPRGL 255
            L + ++ G PTRLW G A  RETRS K  N TRVPVVRAR VTW L   ALRNM G+++S+   F+ G  F+  + RG+ WP  L
Sbjct:   52 LKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKL 136
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BLAST of mRNA_L-elsbetiae_contig9121.18153.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.580e-10
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   10 LHVILREGMPTRLWMG-APARETRSAKILNATRVPVVRAREVTWNLRASALRNM-GNSFSKAKRFTFGDEFNGSV-RGVAWPRGL 255
            L + ++ G P RLW G A  RETRS K  N TRVPVVRAR VTW L   ALRNM G+++S+   F+ G  F+  + RG+ WP  L
Sbjct:   83 LKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKL 167
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9121.18153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT95_ECTSI8.690e-1251.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA08_9PHAE1.580e-1050.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9121contigL-elsbetiae_contig9121:3949..5183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1236
Cds size1233
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816987.2413824-CDS-L-elsbetiae_contig9121:3948..51811622816987.2413824-CDS-L-elsbetiae_contig9121:3948..5181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9121 3949..5181 +
1691683963.2643828-CDS-L-elsbetiae_contig9121:3948..51811691683963.2643828-CDS-L-elsbetiae_contig9121:3948..5181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9121 3949..5181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9121.18153.1prot_L-elsbetiae_contig9121.18153.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9121 3949..5181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9121.18153.1

>prot_L-elsbetiae_contig9121.18153.1 ID=prot_L-elsbetiae_contig9121.18153.1|Name=mRNA_L-elsbetiae_contig9121.18153.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=411bp
TPTLHVILREGMPTRLWMGAPARETRSAKILNATRVPVVRAREVTWNLRA
SALRNMGNSFSKAKRFTFGDEFNGSVRGVAWPRGLEELTFGDAFNQPMTG
VELPASLKELTFEGCTTHSLQGVSWPVSLEMLGFRGVNHPLAGVICPQSL
QTLVFLGIVPNEPISGTVWPVSLKRLCLGDGFNQPIDEVVWPPSLEDLSV
GYDFDQPITRANWPSSLAKLTLGGLFNQAIDAELWPGSLKNIELGWYFNQ
PIDGARWPAFLEQLTLGWNFDLPMTGVNWPNSLEVLRLGHDFNQAIDMVS
WPRSLKEMTFDSVFNQPIGGVRWPASLERLTFGCGFNQPIVAVAWPISLR
LLSFGTCFNQPIADVCWPDSLQEICLGGSSPPRAHDQYLTSPDPHGVVSE
FNQPINEVAWP
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mRNA from alignment at L-elsbetiae_contig9121:3949..5183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9121.18153.1 ID=mRNA_L-elsbetiae_contig9121.18153.1|Name=mRNA_L-elsbetiae_contig9121.18153.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1235bp|location=Sequence derived from alignment at L-elsbetiae_contig9121:3949..5183+ (Laminarionema elsbetiae ELsaHSoW15)
ACGCCCACGCTGCACGTGATATTGCGGGAGGGCATGCCTACCCGTTTGTG
GATGGGTGCCCCTGCCCGGGAGACCCGCAGCGCCAAGATTCTCAACGCGA
CGCGCGTGCCTGTTGTTCGAGCTCGTGAAGTGACGTGGAACCTGCGAGCC
TCGGCGCTGCGGAACATGGGCAATTCTTTTTCGAAGGCGAAGCGTTTTAC
ATTTGGTGATGAGTTCAACGGCAGCGTGCGTGGCGTGGCCTGGCCACGAG
GCCTTGAGGAGCTCACATTCGGCGACGCGTTCAACCAGCCGATGACGGGG
GTGGAGTTGCCAGCATCGCTCAAGGAGCTCACCTTCGAAGGTTGTACCAC
GCATTCATTGCAGGGGGTGTCATGGCCGGTGTCGTTGGAGATGCTGGGGT
TTCGGGGCGTCAACCACCCTCTCGCGGGGGTGATATGTCCACAATCGCTG
CAAACGTTGGTATTCTTGGGCATCGTGCCCAACGAGCCTATTTCCGGAAC
CGTGTGGCCCGTGTCGCTCAAACGTCTTTGCTTGGGGGATGGCTTCAATC
AGCCTATCGACGAGGTAGTCTGGCCACCTTCATTGGAGGATCTGAGCGTC
GGGTATGATTTCGACCAGCCCATCACTCGGGCGAACTGGCCTAGTTCGTT
GGCAAAGCTCACCCTTGGTGGACTGTTCAACCAAGCTATCGATGCGGAAT
TGTGGCCCGGATCGTTGAAAAATATCGAGCTAGGTTGGTATTTCAACCAG
CCCATCGATGGGGCACGGTGGCCAGCTTTCCTTGAGCAGCTGACGCTCGG
GTGGAACTTCGACCTACCCATGACGGGGGTGAACTGGCCGAATTCTTTGG
AGGTGCTTAGGTTGGGGCATGATTTCAACCAAGCTATTGACATGGTTTCG
TGGCCTAGATCGTTGAAAGAAATGACGTTTGATTCCGTATTCAACCAGCC
CATCGGTGGGGTACGGTGGCCAGCTTCCCTTGAGCGGCTGACGTTCGGGT
GTGGCTTCAACCAACCTATCGTCGCGGTAGCGTGGCCTATATCTCTGCGG
CTGCTGAGTTTCGGGACGTGCTTCAACCAACCGATCGCCGACGTCTGCTG
GCCAGATTCTCTGCAAGAAATCTGCCTTGGTGGCAGCAGTCCCCCGCGGG
CTCACGATCAATATCTGACATCGCCAGATCCGCATGGCGTGGTGTCCGAA
TTCAATCAGCCCATCAACGAGGTAGCGTGGCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9121:3949..5183+

>mRNA_L-elsbetiae_contig9121.18153.1 ID=mRNA_L-elsbetiae_contig9121.18153.1|Name=mRNA_L-elsbetiae_contig9121.18153.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2466bp|location=Sequence derived from alignment at L-elsbetiae_contig9121:3949..5183+ (Laminarionema elsbetiae ELsaHSoW15)
ACGCCCACGCTGCACGTGATATTGCGGGAGGGCATGCCTACCCGTTTGTG
GATGGGTGCCCCTGCCCGGGAGACCCGCAGCGCCAAGATTCTCAACGCGA
CGCGCGTGCCTGTTGTTCGAGCTCGTGAAGTGACGTGGAACCTGCGAGCC
TCGGCGCTGCGGAACATGGGCAATTCTTTTTCGAAGGCGAAGCGTTTTAC
ATTTGGTGATGAGTTCAACGGCAGCGTGCGTGGCGTGGCCTGGCCACGAG
GCCTTGAGGAGCTCACATTCGGCGACGCGTTCAACCAGCCGATGACGGGG
GTGGAGTTGCCAGCATCGCTCAAGGAGCTCACCTTCGAAGGTTGTACCAC
GCATTCATTGCAGGGGGTGTCATGGCCGGTGTCGTTGGAGATGCTGGGGT
TTCGGGGCGTCAACCACCCTCTCGCGGGGGTGATATGTCCACAATCGCTG
CAAACGTTGGTATTCTTGGGCATCGTGCCCAACGAGCCTATTTCCGGAAC
CGTGTGGCCCGTGTCGCTCAAACGTCTTTGCTTGGGGGATGGCTTCAATC
AGCCTATCGACGAGGTAGTCTGGCCACCTTCATTGGAGGATCTGAGCGTC
GGGTATGATTTCGACCAGCCCATCACTCGGGCGAACTGGCCTAGTTCGTT
GGCAAAGCTCACCCTTGGTGGACTGTTCAACCAAGCTATCGATGCGGAAT
TGTGGCCCGGATCGTTGAAAAATATCGAGCTAGGTTGGTATTTCAACCAG
CCCATCGATGGGGCACGGTGGCCAGCTTTCCTTGAGCAGCTGACGCTCGG
GTGGAACTTCGACCTACCCATGACGGGGGTGAACTGGCCGAATTCTTTGG
AGGTGCTTAGGTTGGGGCATGATTTCAACCAAGCTATTGACATGGTTTCG
TGGCCTAGATCGTTGAAAGAAATGACGTTTGATTCCGTATTCAACCAGCC
CATCGGTGGGGTACGGTGGCCAGCTTCCCTTGAGCGGCTGACGTTCGGGT
GTGGCTTCAACCAACCTATCGTCGCGGTAGCGTGGCCTATATCTCTGCGG
CTGCTGAGTTTCGGGACGTGCTTCAACCAACCGATCGCCGACGTCTGCTG
GCCAGATTCTCTGCAAGAAATCTGCCTTGGTGGCAGCAGTCCCCCGCGGG
CTCACGATCAATATCTGACATCGCCAGATCCGCATGGCGTGGTGTCCGAA
TTCAATCAGCCCATCAACGAGGTAGCGTGGCCCACGCCCACGCTGCACGT
GATATTGCGGGAGGGCATGCCTACCCGTTTGTGGATGGGTGCCCCTGCCC
GGGAGACCCGCAGCGCCAAGATTCTCAACGCGACGCGCGTGCCTGTTGTT
CGAGCTCGTGAAGTGACGTGGAACCTGCGAGCCTCGGCGCTGCGGAACAT
GGGCAATTCTTTTTCGAAGGCGAAGCGTTTTACATTTGGTGATGAGTTCA
ACGGCAGCGTGCGTGGCGTGGCCTGGCCACGAGGCCTTGAGGAGCTCACA
TTCGGCGACGCGTTCAACCAGCCGATGACGGGGGTGGAGTTGCCAGCATC
GCTCAAGGAGCTCACCTTCGAAGGTTGTACCACGCATTCATTGCAGGGGG
TGTCATGGCCGGTGTCGTTGGAGATGCTGGGGTTTCGGGGCGTCAACCAC
CCTCTCGCGGGGGTGATATGTCCACAATCGCTGCAAACGTTGGTATTCTT
GGGCATCGTGCCCAACGAGCCTATTTCCGGAACCGTGTGGCCCGTGTCGC
TCAAACGTCTTTGCTTGGGGGATGGCTTCAATCAGCCTATCGACGAGGTA
GTCTGGCCACCTTCATTGGAGGATCTGAGCGTCGGGTATGATTTCGACCA
GCCCATCACTCGGGCGAACTGGCCTAGTTCGTTGGCAAAGCTCACCCTTG
GTGGACTGTTCAACCAAGCTATCGATGCGGAATTGTGGCCCGGATCGTTG
AAAAATATCGAGCTAGGTTGGTATTTCAACCAGCCCATCGATGGGGCACG
GTGGCCAGCTTTCCTTGAGCAGCTGACGCTCGGGTGGAACTTCGACCTAC
CCATGACGGGGGTGAACTGGCCGAATTCTTTGGAGGTGCTTAGGTTGGGG
CATGATTTCAACCAAGCTATTGACATGGTTTCGTGGCCTAGATCGTTGAA
AGAAATGACGTTTGATTCCGTATTCAACCAGCCCATCGGTGGGGTACGGT
GGCCAGCTTCCCTTGAGCGGCTGACGTTCGGGTGTGGCTTCAACCAACCT
ATCGTCGCGGTAGCGTGGCCTATATCTCTGCGGCTGCTGAGTTTCGGGAC
GTGCTTCAACCAACCGATCGCCGACGTCTGCTGGCCAGATTCTCTGCAAG
AAATCTGCCTTGGTGGCAGCAGTCCCCCGCGGGCTCACGATCAATATCTG
ACATCGCCAGATCCGCATGGCGTGGTGTCCGAATTCAATCAGCCCATCAA
CGAGGTAGCGTGGCCC
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