mRNA_L-elsbetiae_contig9117.18147.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9117.18147.1
Unique NamemRNA_L-elsbetiae_contig9117.18147.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig9117.18147.1 vs. uniprot
Match: A0A6H5K608_9PHAE (Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K608_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 1.240e-68
Identity = 119/156 (76.28%), Postives = 124/156 (79.49%), Query Frame = 1 
Query:    1 AGGVWYPDSAHKTAQAIQDLNHEGLPLMVFANWRGFSGGQRDMFDEVSGRYTSRRACVRPHARRHLFCFCIASWFVLKYGALIVDALVAYKQPVFVYIPPHAELRGGAWVVVDSTVNADVMEMYAANGARGGVLEANGAASIKFRDRDLLKTGTQL 468
            AGGVWYPDSAHKTAQAI+DLNHEGLPLMVFANWRGFSGGQRDMFDEV                             LKYGALIVDALV YKQPVFVYIPPHAELRGGAWVVVDSTVNA+VMEMYAANGARGGVLEANGAASIKFR++DLLKT  +L
Sbjct: 1959 AGGVWYPDSAHKTAQAIRDLNHEGLPLMVFANWRGFSGGQRDMFDEV-----------------------------LKYGALIVDALVEYKQPVFVYIPPHAELRGGAWVVVDSTVNANVMEMYAANGARGGVLEANGAASIKFRNKDLLKTAHRL 2085
[Close]
BLAST of mRNA_L-elsbetiae_contig9117.18147.1 vs. uniprot
Match: A0A7S3LZP0_9STRA (Acetyl-CoA carboxylase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZP0_9STRA)

HSP 1 Score: 201 bits (512), Expect = 6.330e-57
Identity = 98/156 (62.82%), Postives = 116/156 (74.36%), Query Frame = 1 
Query:    1 AGGVWYPDSAHKTAQAIQDLNHEGLPLMVFANWRGFSGGQRDMFDEVSGRYTSRRACVRPHARRHLFCFCIASWFVLKYGALIVDALVAYKQPVFVYIPPHAELRGGAWVVVDSTVNADVMEMYAANGARGGVLEANGAASIKFRDRDLLKTGTQL 468
            AGGVW+PDSA+KTAQA++D N EGLP ++FANWRGFSGGQRDMFDEV                             LK+G++IVDALVAY+QP+FVYIPP AELRGGAWVVVDST+N+DVME YAA  ARGGVLEA GAASIKFRD+D++ T  ++
Sbjct: 1987 AGGVWFPDSAYKTAQALRDFNREGLPCIIFANWRGFSGGQRDMFDEV-----------------------------LKFGSMIVDALVAYQQPLFVYIPPFAELRGGAWVVVDSTINSDVMEFYAAEDARGGVLEAAGAASIKFRDQDIIATAHRI 2113
[Close]
BLAST of mRNA_L-elsbetiae_contig9117.18147.1 vs. uniprot
Match: A0A835YMY6_9STRA (Acetyl-CoA carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMY6_9STRA)

HSP 1 Score: 201 bits (511), Expect = 8.630e-57
Identity = 102/156 (65.38%), Postives = 114/156 (73.08%), Query Frame = 1 
Query:    1 AGGVWYPDSAHKTAQAIQDLNHEGLPLMVFANWRGFSGGQRDMFDEVSGRYTSRRACVRPHARRHLFCFCIASWFVLKYGALIVDALVAYKQPVFVYIPPHAELRGGAWVVVDSTVNADVMEMYAANGARGGVLEANGAASIKFRDRDLLKTGTQL 468
            AG VW+PDSA KTAQAI+DLN EGLPL++FANWRGFSGGQRDMFDEV                             LK+GA IVD LVAYKQPVFVYIPP AELRGGAWVVVDST+N DVMEMYAA+ +RGGVLEANGAASIKFR +D++    +L
Sbjct: 1959 AGCVWFPDSASKTAQAIRDLNCEGLPLIIFANWRGFSGGQRDMFDEV-----------------------------LKFGAQIVDGLVAYKQPVFVYIPPFAELRGGAWVVVDSTINPDVMEMYAADDSRGGVLEANGAASIKFRQKDIIAAAHRL 2085
[Close]
BLAST of mRNA_L-elsbetiae_contig9117.18147.1 vs. uniprot
Match: A0A7S2I8N6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I8N6_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.860e-56
Identity = 96/157 (61.15%), Postives = 114/157 (72.61%), Query Frame = 1 
Query:    1 AGGVWYPDSAHKTAQAIQDLNHEGLPLMVFANWRGFSGGQRDMFDEVSGRYTSRRACVRPHARRHLFCFCIASWFVLKYGALIVDALVAYKQPVFVYIPPHAELRGGAWVVVDSTVNADVMEMYAANG-ARGGVLEANGAASIKFRDRDLLKTGTQL 468
            AG VW+P+SA+KTAQAI D   E LPLM+FANWRGFSGGQRDMFDEV                             LKYG+LIVDA VAY+QPVFV+IPP AE+RGGAWVV+D+++NA VMEMYA++G ARGGVLEANGAAS+K+R +DLL T  +L
Sbjct:   12 AGCVWFPNSAYKTAQAINDFRTEDLPLMIFANWRGFSGGQRDMFDEV-----------------------------LKYGSLIVDAFVAYEQPVFVFIPPFAEIRGGAWVVLDASINASVMEMYASSGSARGGVLEANGAASVKYRSKDLLSTMHRL 139
[Close]
BLAST of mRNA_L-elsbetiae_contig9117.18147.1 vs. uniprot
Match: A0A7S2F9N9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9N9_9STRA)

HSP 1 Score: 191 bits (485), Expect = 2.160e-56
Identity = 96/156 (61.54%), Postives = 110/156 (70.51%), Query Frame = 1 
Query:    1 AGGVWYPDSAHKTAQAIQDLNHEGLPLMVFANWRGFSGGQRDMFDEVSGRYTSRRACVRPHARRHLFCFCIASWFVLKYGALIVDALVAYKQPVFVYIPPHAELRGGAWVVVDSTVNADVMEMYAANGARGGVLEANGAASIKFRDRDLLKTGTQL 468
            AGGVW+PDSA+KTAQAI D N E LP M+FANWRGFSGGQRDMFDEV                             LK+GA IVDALVA+KQP+FVYIPP AELRGGAWVVVDST+NADVME +AA+ +RGGVLE +  ASIK+R +DL  T  +L
Sbjct:   94 AGGVWFPDSAYKTAQAINDFNAEDLPCMIFANWRGFSGGQRDMFDEV-----------------------------LKFGAQIVDALVAFKQPIFVYIPPFAELRGGAWVVVDSTINADVMEFFAADDSRGGVLEPDAIASIKYRKKDLTATAHRL 220
[Close]
BLAST of mRNA_L-elsbetiae_contig9117.18147.1 vs. uniprot
Match: A0A0B4L7U5_9STRA (Acetyl-CoA carboxylase (Fragment) n=1 Tax=Nannochloropsis oculata TaxID=43925 RepID=A0A0B4L7U5_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.610e-55
Identity = 96/156 (61.54%), Postives = 114/156 (73.08%), Query Frame = 1 
Query:    1 AGGVWYPDSAHKTAQAIQDLNHEGLPLMVFANWRGFSGGQRDMFDEVSGRYTSRRACVRPHARRHLFCFCIASWFVLKYGALIVDALVAYKQPVFVYIPPHAELRGGAWVVVDSTVNADVMEMYAANGARGGVLEANGAASIKFRDRDLLKTGTQL 468
            AGGVW+PDSA+KTAQAI+D N E LPLM+F+NWRGFSGGQRDMFDEV                             LK+G++IVDALVA+ QP+FVYIPPHAELRGGAWVVVD T++++VMEMYAA  ARGGVLE NGAA IKFR++D + T  +L
Sbjct: 2030 AGGVWFPDSAYKTAQAIRDFNGEDLPLMIFSNWRGFSGGQRDMFDEV-----------------------------LKFGSMIVDALVAFAQPIFVYIPPHAELRGGAWVVVDPTIHSEVMEMYAATEARGGVLEPNGAAEIKFREKDYVATAHRL 2156
[Close]
BLAST of mRNA_L-elsbetiae_contig9117.18147.1 vs. uniprot
Match: A0A813BWW2_9DINO (ACAC protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BWW2_9DINO)

HSP 1 Score: 185 bits (470), Expect = 5.760e-55
Identity = 92/150 (61.33%), Postives = 106/150 (70.67%), Query Frame = 1 
Query:    1 AGGVWYPDSAHKTAQAIQDLNHEGLPLMVFANWRGFSGGQRDMFDEVSGRYTSRRACVRPHARRHLFCFCIASWFVLKYGALIVDALVAYKQPVFVYIPPHAELRGGAWVVVDSTVNADVMEMYAANGARGGVLEANGAASIKFRDRDLL 450
            AGGVWYPDSA+KTAQAI+D   EGLPL++FANWRGFSGGQRDMF+E+                             LKYG++IV+ALV Y QPVFV+IPP+AELRGGAWVVVD T+N+ VMEMYAA  ARGGVLE +G   IKFRDR  L
Sbjct:  139 AGGVWYPDSAYKTAQAIRDFQGEGLPLIIFANWRGFSGGQRDMFNEI-----------------------------LKYGSMIVEALVDYTQPVFVFIPPYAELRGGAWVVVDPTINSSVMEMYAAPEARGGVLEPSGTVEIKFRDRQRL 259
[Close]
BLAST of mRNA_L-elsbetiae_contig9117.18147.1 vs. uniprot
Match: A0A7S4MUC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MUC6_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.130e-54
Identity = 97/159 (61.01%), Postives = 117/159 (73.58%), Query Frame = 1 
Query:    1 AGGVWYPDSAHKTAQAIQDLNHEGLPLMVFANWRGFSGGQRDMFDEVSGRYTSRRACVRPHARRHLFCFCIASWFVLKYGALIVDALVAYKQPVFVYIPPHAELRGGAWVVVDSTVNADVMEMYAANG-ARGGVLEANGAASIKFRDRDLLKTGTQLTQ 474
            AG VW+P+SA+KTAQAI D   E LPL+VFANWRGFSGGQRDMFDEV                             LKYG+LIVDA VAY+QPVFV+IPP+AE+RGGAWVV+D+++NA VMEMYAA+G ARGGVLEANGAAS+K+R +DL+KT  +L +
Sbjct:  384 AGCVWFPNSAYKTAQAINDFRTEDLPLIVFANWRGFSGGQRDMFDEV-----------------------------LKYGSLIVDAFVAYEQPVFVFIPPYAEIRGGAWVVLDASINAAVMEMYAASGTARGGVLEANGAASVKYRTKDLIKTMHRLDE 513
[Close]
BLAST of mRNA_L-elsbetiae_contig9117.18147.1 vs. uniprot
Match: A0A7S2VGJ5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VGJ5_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.850e-53
Identity = 91/157 (57.96%), Postives = 110/157 (70.06%), Query Frame = 1 
Query:    1 AGGVWYPDSAHKTAQAIQDLNHEGLPLMVFANWRGFSGGQRDMFDEVSGRYTSRRACVRPHARRHLFCFCIASWFVLKYGALIVDALVAYKQPVFVYIPPHAELRGGAWVVVDSTVNADVMEMYAANG-ARGGVLEANGAASIKFRDRDLLKTGTQL 468
            AGGVW+P+SA+KTAQ+I D   E LPLMV ANWRGFSGGQRDMF+EV                             LKYG++IVDA  AY+QPVFV+IPP  E+RGGAWVV+D+++N+ VMEMYA  G ARGGVLEANGAAS+K+R RDL+ T  +L
Sbjct:   25 AGGVWFPNSAYKTAQSINDFRVEDLPLMVIANWRGFSGGQRDMFEEV-----------------------------LKYGSMIVDAFTAYEQPVFVFIPPFGEIRGGAWVVLDASINSSVMEMYATKGTARGGVLEANGAASVKYRTRDLISTMHRL 152
[Close]
BLAST of mRNA_L-elsbetiae_contig9117.18147.1 vs. uniprot
Match: A0A7S2U509_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U509_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.960e-53
Identity = 98/159 (61.64%), Postives = 115/159 (72.33%), Query Frame = 1 
Query:    1 AGGVWYPDSAHKTAQAIQDLNHEGLPLMVFANWRGFSGGQRDMFDEVSGRYTSRRACVRPHARRHLFCFCIASWFVLKYGALIVDALVAYKQPVFVYIPPHAELRGGAWVVVDSTVNADVMEMYAANG-ARGGVLEANGAASIKFRDRDLLKTGTQLTQ 474
            AG VW+P+SA+KTAQAI D   E LPLMVFANWRGFSGGQRDMFDEV                             LKYG+LIVDA VAY+QPVFV+IPPHAE+RGGAWVV+D+++NA VMEMYA+ G ARGGVLEANGAAS+K+R +DLL T  +L +
Sbjct: 1280 AGCVWFPNSAYKTAQAINDFRTEDLPLMVFANWRGFSGGQRDMFDEV-----------------------------LKYGSLIVDAFVAYEQPVFVFIPPHAEIRGGAWVVLDASINASVMEMYASAGTARGGVLEANGAASVKYRTKDLLTTMHRLDE 1409
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9117.18147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K608_9PHAE1.240e-6876.28Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP... [more]
A0A7S3LZP0_9STRA6.330e-5762.82Acetyl-CoA carboxylase n=1 Tax=Spumella elongata T... [more]
A0A835YMY6_9STRA8.630e-5765.38Acetyl-CoA carboxylase n=1 Tax=Tribonema minus Tax... [more]
A0A7S2I8N6_9STRA1.860e-5661.15Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2F9N9_9STRA2.160e-5661.54Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A0B4L7U5_9STRA2.610e-5561.54Acetyl-CoA carboxylase (Fragment) n=1 Tax=Nannochl... [more]
A0A813BWW2_9DINO5.760e-5561.33ACAC protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7S4MUC6_9STRA2.130e-5461.01Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2VGJ5_9STRA1.850e-5357.96Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2U509_9STRA1.960e-5361.64Hypothetical protein n=1 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9117contigL-elsbetiae_contig9117:6809..7788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue8.8e-44
Seed eggNOG ortholog159749.K0R0D3
Preferred nameACACB
KEGG rclassRC00040,RC00253,RC00367
KEGG koko:K01946,ko:K11262
KEGG ReactionR00742,R04385,R04386
KEGG Pathwayko00061,ko00254,ko00620,ko00640,ko01100,ko01110,ko01212,ko04152,ko04910,ko04920,ko04922,ko04931,map00061,map00254,map00620,map00640,map01100,map01110,map01212,map04152,map04910,map04920,map04922,map04931
KEGG ModuleM00082
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000902,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001101,GO:0001650,GO:0001676,GO:0001894,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0003989,GO:0004075,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0005829,GO:0005856,GO:0005975,GO:0005976,GO:0005977,GO:0006073,GO:0006082,GO:0006084,GO:0006091,GO:0006109,GO:0006112,GO:0006139,GO:0006163,GO:0006164,GO:0006355,GO:0006606,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006638,GO:0006639,GO:0006641,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006853,GO:0006869,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006998,GO:0008104,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009374,GO:0009605,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009744,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0009991,GO:0010033,GO:0010256,GO:0010468,GO:0010556,GO:0010557,GO:0010565,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010675,GO:0010876,GO:0010883,GO:0010884,GO:0010906,GO:0012505,GO:0014070,GO:0015031,GO:0015629,GO:0015711,GO:0015718,GO:0015833,GO:0015849,GO:0015908,GO:0015909,GO:0015980,GO:0016020,GO:0016043,GO:0016053,GO:0016421,GO:0016874,GO:0016879,GO:0016885,GO:0017038,GO:0017076,GO:0018130,GO:0019216,GO:0019217,GO:0019218,GO:0019219,GO:0019222,GO:0019432,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0019842,GO:0019867,GO:0019899,GO:0019900,GO:0019904,GO:0022607,GO:0030554,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031406,GO:0031667,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0031998,GO:0031999,GO:0032365,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032810,GO:0032870,GO:0032879,GO:0032989,GO:0033036,GO:0033218,GO:0033293,GO:0033365,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034220,GO:0034285,GO:0034504,GO:0034613,GO:0034641,GO:0034654,GO:0034694,GO:0034695,GO:0035257,GO:0035337,GO:0035383,GO:0035384,GO:0035639,GO:0036094,GO:0040008,GO:0040029,GO:0042175,GO:0042221,GO:0042493,GO:0042592,GO:0042759,GO:0042802,GO:0042886,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043565,GO:0043603,GO:0043604,GO:0043933,GO:0044042,GO:0044085,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045017,GO:0045184,GO:0045540,GO:0045833,GO:0045893,GO:0045922,GO:0045927,GO:0045935,GO:0046320,GO:0046322,GO:0046390,GO:0046394,GO:0046460,GO:0046463,GO:0046483,GO:0046486,GO:0046620,GO:0046622,GO:0046890,GO:0046907,GO:0046942,GO:0046949,GO:0046966,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048638,GO:0048639,GO:0048856,GO:0048869,GO:0048871,GO:0048878,GO:0050662,GO:0050692,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050810,GO:0050896,GO:0050994,GO:0050995,GO:0051094,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051427,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0055086,GO:0055088,GO:0055114,GO:0060249,GO:0060255,GO:0060420,GO:0060421,GO:0061024,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070542,GO:0070727,GO:0070887,GO:0071229,GO:0071310,GO:0071322,GO:0071324,GO:0071329,GO:0071379,GO:0071380,GO:0071396,GO:0071398,GO:0071495,GO:0071616,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072330,GO:0072521,GO:0072522,GO:0072594,GO:0080090,GO:0090181,GO:0090407,GO:0097009,GO:0097066,GO:0097159,GO:0097305,GO:0097306,GO:0097367,GO:0098588,GO:0098656,GO:0098805,GO:0098827,GO:0106118,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1901654,GO:1901655,GO:1901681,GO:1901700,GO:1901701,GO:1902001,GO:1902680,GO:1902930,GO:1903506,GO:1903508,GO:1903825,GO:1905039,GO:1905952,GO:1905954,GO:1990542,GO:1990837,GO:2000026,GO:2000112,GO:2001141,GO:2001293,GO:2001295
EggNOG free text desc.acetyl-CoA carboxylase
EggNOG OGs2XAV2@2836,COG0439@1,KOG0368@2759
EC2.1.3.15,6.3.4.14,6.4.1.2
COG Functional cat.I
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Ec32 ortholog descriptionacetyl-CoA carboxylase
Ec32 orthologEc-20_002520.1
Exons3
Model size486
Cds size486
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9117.18147.1prot_L-elsbetiae_contig9117.18147.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9117 6809..7788 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816986.8351512-CDS-L-elsbetiae_contig9117:6808..69261622816986.8351512-CDS-L-elsbetiae_contig9117:6808..6926Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9117 6809..6926 -
1691683962.9704826-CDS-L-elsbetiae_contig9117:6808..69261691683962.9704826-CDS-L-elsbetiae_contig9117:6808..6926Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9117 6809..6926 -
1622816986.846486-CDS-L-elsbetiae_contig9117:7168..73111622816986.846486-CDS-L-elsbetiae_contig9117:7168..7311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9117 7169..7311 -
1691683962.9851055-CDS-L-elsbetiae_contig9117:7168..73111691683962.9851055-CDS-L-elsbetiae_contig9117:7168..7311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9117 7169..7311 -
1622816986.861764-CDS-L-elsbetiae_contig9117:7563..77881622816986.861764-CDS-L-elsbetiae_contig9117:7563..7788Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9117 7564..7788 -
1691683962.9955976-CDS-L-elsbetiae_contig9117:7563..77881691683962.9955976-CDS-L-elsbetiae_contig9117:7563..7788Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9117 7564..7788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9117.18147.1

>prot_L-elsbetiae_contig9117.18147.1 ID=prot_L-elsbetiae_contig9117.18147.1|Name=mRNA_L-elsbetiae_contig9117.18147.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
AGGVWYPDSAHKTAQAIQDLNHEGLPLMVFANWRGFSGGQRDMFDEVSGR
YTSRRACVRPHARRHLFCFCIASWFVLKYGALIVDALVAYKQPVFVYIPP
HAELRGGAWVVVDSTVNADVMEMYAANGARGGVLEANGAASIKFRDRDLL
KTGTQLTQYAD*
back to top

mRNA from alignment at L-elsbetiae_contig9117:6809..7788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9117.18147.1 ID=mRNA_L-elsbetiae_contig9117.18147.1|Name=mRNA_L-elsbetiae_contig9117.18147.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=980bp|location=Sequence derived from alignment at L-elsbetiae_contig9117:6809..7788- (Laminarionema elsbetiae ELsaHSoW15)
GCCGGCGGCGTCTGGTACCCCGATAGCGCGCACAAGACCGCCCAGGCAAT
CCAAGACCTGAACCACGAGGGGCTGCCCCTGATGGTGTTCGCCAACTGGC
GAGGCTTTTCGGGGGGCCAGCGCGACATGTTTGACGAGGTGAGCGGGCGA
TATACAAGTAGGCGTGCATGCGTCCGGCCGCACGCTCGCAGACATTTGTT
TTGTTTTTGTATTGCGTCTTGGTTTGTAACTTCTCTCTCCTCTTTGCTCC
GTGCGCGTTCTTTCCAAGAACAAGTGTACCAGGCACCTGCACGCCTCCCT
GAAAACCAACCCATCGCTTTGCCCTTGGGACGACCTTGTGCTAATGCCTT
CTCTCTCGCTTTTATTTTAGGGAGGACCTTGTGCTAATGCTTTCTCTCGC
TTTAATTTGATTCGTTTTTTTTTTATGTCCTGGCTGATGTTCTGGTTGCT
GTTTGTTGTCACCTTGCTCACCCCCAGGTGCTCAAGTACGGCGCTCTGAT
CGTCGACGCTCTCGTGGCGTACAAGCAGCCGGTCTTCGTGTACATTCCTC
CACACGCCGAGCTGAGAGGAGGGGCTTGGGTGGTGGTCGACAGCACTGTC
AACGCCGACGTGATGGAGATGTGAGCGAGCAGCACGCAGAGCGAAGCATG
GTCTATTTTAGGCTTGTATTTAACTAGTGATGTTTAGTAACGCAGTGCGT
GCAGCCTTTTTGCTGGCTGTTGTCCGCGTGGCTGCTGCTGCTGCTGCTGC
TGTTCCTTGAGCGAATCGTTGCGAGACTCTGCTCTTCTTTGACCCGCCAA
TCCTGTTTTTGTTTTGTTTGTGTTTTTGTTTTGTTTGGGTGATAAACTTG
TTTGGTTGACAGGTACGCCGCCAACGGCGCACGAGGAGGAGTGCTGGAGG
CGAACGGCGCGGCCAGCATCAAGTTCCGCGATAGAGACCTGCTCAAGACA
GGTACACAACTAACCCAGTATGCAGATTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9117:6809..7788-

>mRNA_L-elsbetiae_contig9117.18147.1 ID=mRNA_L-elsbetiae_contig9117.18147.1|Name=mRNA_L-elsbetiae_contig9117.18147.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig9117:6809..7788- (Laminarionema elsbetiae ELsaHSoW15)
GCCGGCGGCGTCTGGTACCCCGATAGCGCGCACAAGACCGCCCAGGCAAT
CCAAGACCTGAACCACGAGGGGCTGCCCCTGATGGTGTTCGCCAACTGGC
GAGGCTTTTCGGGGGGCCAGCGCGACATGTTTGACGAGGTGAGCGGGCGA
TATACAAGTAGGCGTGCATGCGTCCGGCCGCACGCTCGCAGACATTTGTT
TTGTTTTTGTATTGCGTCTTGGTTTGCCGGCGGCGTCTGGTACCCCGATA
GCGCGCACAAGACCGCCCAGGCAATCCAAGACCTGAACCACGAGGGGCTG
CCCCTGATGGTGTTCGCCAACTGGCGAGGCTTTTCGGGGGGCCAGCGCGA
CATGTTTGACGAGGTGAGCGGGCGATATACAAGTAGGCGTGCATGCGTCC
GGCCGCACGCTCGCAGACATTTGTTTTGTTTTTGTATTGCGTCTTGGTTT
GTGCTCAAGTACGGCGCTCTGATCGTCGACGCTCTCGTGGCGTACAAGCA
GCCGGTCTTCGTGTACATTCCTCCACACGCCGAGCTGAGAGGAGGGGCTT
GGGTGGTGGTCGACAGCACTGTCAACGCCGACGTGATGGAGATGTGCTCA
AGTACGGCGCTCTGATCGTCGACGCTCTCGTGGCGTACAAGCAGCCGGTC
TTCGTGTACATTCCTCCACACGCCGAGCTGAGAGGAGGGGCTTGGGTGGT
GGTCGACAGCACTGTCAACGCCGACGTGATGGAGATGTACGCCGCCAACG
GCGCACGAGGAGGAGTGCTGGAGGCGAACGGCGCGGCCAGCATCAAGTTC
CGCGATAGAGACCTGCTCAAGACAGGTACACAACTAACCCAGTATGCAGA
TTGAGTACGCCGCCAACGGCGCACGAGGAGGAGTGCTGGAGGCGAACGGC
GCGGCCAGCATCAAGTTCCGCGATAGAGACCTGCTCAAGACAGGTACACA
ACTAACCCAGTATGCAGATTGA
back to top