mRNA_L-elsbetiae_contig9103.18134.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9103.18134.1
Unique NamemRNA_L-elsbetiae_contig9103.18134.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9103.18134.1 vs. uniprot
Match: A0A835ZCZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCZ2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.120e-8
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 2 
Query:  188 LNDVVMGANNFTKCGYIGDFYQNVYLDAMCTDLQGNIEAVAGPALVVVILMFLSF 352
            +N V M A+ ++ CG+IGDFYQ+VYL A+C   QGN+  +A P L V  LM ++F
Sbjct:   78 VNGVFMKADAYSMCGFIGDFYQSVYLGAVCEGFQGNLRDIAVPILFVACLMLVAF 132
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9103.18134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZCZ2_9STRA4.120e-849.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9103contigL-elsbetiae_contig9103:495..3207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size362
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9103.18134.1prot_L-elsbetiae_contig9103.18134.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9103 495..3176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816985.9323525-CDS-L-elsbetiae_contig9103:494..6301622816985.9323525-CDS-L-elsbetiae_contig9103:494..630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9103 495..630 -
1691683962.355179-CDS-L-elsbetiae_contig9103:494..6301691683962.355179-CDS-L-elsbetiae_contig9103:494..630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9103 495..630 -
1622816985.943325-CDS-L-elsbetiae_contig9103:1729..18781622816985.943325-CDS-L-elsbetiae_contig9103:1729..1878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9103 1730..1878 -
1691683962.3681788-CDS-L-elsbetiae_contig9103:1729..18781691683962.3681788-CDS-L-elsbetiae_contig9103:1729..1878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9103 1730..1878 -
1622816985.954776-CDS-L-elsbetiae_contig9103:3131..31761622816985.954776-CDS-L-elsbetiae_contig9103:3131..3176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9103 3132..3176 -
1691683962.377259-CDS-L-elsbetiae_contig9103:3131..31761691683962.377259-CDS-L-elsbetiae_contig9103:3131..3176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9103 3132..3176 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816985.966562-UTR-L-elsbetiae_contig9103:3176..32071622816985.966562-UTR-L-elsbetiae_contig9103:3176..3207Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9103 3177..3207 -
1691683962.386082-UTR-L-elsbetiae_contig9103:3176..32071691683962.386082-UTR-L-elsbetiae_contig9103:3176..3207Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9103 3177..3207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9103.18134.1

>prot_L-elsbetiae_contig9103.18134.1 ID=prot_L-elsbetiae_contig9103.18134.1|Name=mRNA_L-elsbetiae_contig9103.18134.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MGLIDSNITVITDQQAFMGDLRDEMNETLGSLADTLDSLVVDLDALAEDL
RSLNDVVMGANNFTKCGYIGDFYQNVYLDAMCTDLQGNIEAVAGPALVVV
ILMFLSFCIQ
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mRNA from alignment at L-elsbetiae_contig9103:495..3207-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9103.18134.1 ID=mRNA_L-elsbetiae_contig9103.18134.1|Name=mRNA_L-elsbetiae_contig9103.18134.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2713bp|location=Sequence derived from alignment at L-elsbetiae_contig9103:495..3207- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGCGAACTCGAGGACGTTCGATACGAAATGGGTCTGATTGACTCTA
ACATCACAGTCATCACGGACCAACAGGTGGGCTTGGCGGGCCGCCGATAC
TGCTTCTATCCACACAAGACGTTTATCCCGTACACCCTTGGTAAAATAGA
AACACTACACGCACATATCGATTATTATTATTATTTCTATTTTTGGTGTT
GCGCCCGTCCTTCTACTTGCCGTTCCAATTCCGAGGTGTGTGCATAGGTG
CACCCGTTACGCATGTGAATACATACCAATTTCGGCGTTTTGAGGCAAGC
GCCACTTACTGAAGACAGTCTCTGCATTCCCACTGATAACATTAAATAGA
GCAAAAAAAGCCCAAGCGTAGAATGGGGTCCGAATTCAGCCAGCAAGAGC
CAAACCGGATTCATTCACGTTCTGGGGACTGGGGAGAGATTATTGTTTCG
GTGAAATGGACTACAACCCAATTGAAGCGGATGATCGTGCATCCTGTTTG
TTCGTTCATAAATAGAAAAAAAGGTTTTAAGCGATAAATTATCTAGCCTG
CTTGCGTGAACGGGAAAAAACTTGAAACCACCGGTCGGTACGAGTAGTAG
TGGGCGTAAAAGTTGCTTCGGCGAGGAGGGGGGTATATCTGGATGAGGGC
CATGTGCAATAATTGCAAGCTCCAAAGTTGACCAAGTGATGTGCCGACGC
TTCCACGTCTCCTGGCAGGCTTCTTGTATCGTACGCGCACCAAACGGGGG
TACTTGTATTGGAAAATATAGTGAACAATCCCCCACCGCGGTCACTTTTT
CAGAACTGGGGGCCCTGCTGCAGGAAAATCCTATACACTACCGTAGGTGA
CACAAGATACCACACCCCCTGGACCGATTTTCAAAGCTCGATTCCTCTCC
AGTAAGAAGAGCGCCAGTGCCGAATAGGGGTGCATTGGAAAGATCTAGGC
GAGGGCTGCCCGAAAATGTGCCGTTTGATGCTGGCAACTTCTTCGTTACG
GAGTAATGGAGCTCTAGAATTCGGCCCAGGGGGTGTGGTATCTTGTGTCA
CCTACGGTATACATACTGTGCCTCTGGCCGGACCTTTGGCACCTAGATCT
GCATGCATATGTAGGTGTTTGCTCTTAGGGACTTTGCTGGCAAAACCCAC
GGCTCCTCTTGAGAATCGGGGGCTTTACTGCAGGAAAGCCTGTTGGAAAA
GACCCCTCAATCGCGGAAAAGGAAGTCGAGCCTGCAAACGTTTTACGGGA
CGGAGCCCCCCTGTGTACGTTTTTTCTCCAAACACTCTAACTTTTTTGGC
CTTTTTCTATAAATATCGTGAATATCTAGGCATTCATGGGGGACCTGCGA
GACGAGATGAACGAGACGCTCGGCTCCTTGGCAGACACTCTGGATAGCCT
TGTGGTCGACCTCGACGCCCTGGCCGAGGACTTGAGGAGCCTGAACGACG
TCGTTATGGGGGCCAACAACTTCACCAAGTGCGTGTCTTATAAGCCGAGA
TCAAGTCAGGGTATAGTGGCGCCCGGAAAGAAGGATTGTTTTAAATAGTG
GTGCTTTGGATAGGAGTTAGGTCGAGTGGATCACTCCAGGGGTATGGTTA
CGTGTTTGTGTGGGTGTGGGTGTGTGCGGGTGGGTCCCGCGGGGAGTTAA
AGGGTCACCAAGCCCACTTGGTCGATGTGTTTGTTTGTTTTTTCCTCCCA
TTATTGGCATGTTGTGTGTGTCACCTACTGGTCCTGGGATAACACAGAGT
ACCTACACTCGACGCACACCTCTCACGGAGGGCGAGGAGCACCGTGCGCT
AACAGAGGTTGTGCTGCCTTCACCCGGTGTATCCACGTCTGCTGGCCGGC
AGGGGTCGCAGATCTCAAACAACACTCATTCGTGGACCGATTATTATGTA
GCCGGTTTTTGATTGTTTTTTCGTCGCATTTATTTCGATTGCACCAATCA
GCGCCTGACTAACCCGTGGTATCTATTGATTTTAGTCCGTATTTATTGAT
TTTAGTTAAAATTTCCAGGAGGGTGCTCTGTGCTGACACTGATGTGGGGG
GCGGTGGCCTCAGGGGAGGAACAGCCCCTTCTTCTGTGTGGCCACCGGAT
GGATCAGAGCTGATTATTTTTTCGTCGCATTTATTTCCAGCGCTCGAAGG
GCGCTCCTTGCCACGAGGGTGGCGGTGGCATCATCTTGCCAGAGCTCTGA
ACCATGGTCGCACAGAAGGGTCCCTCTTCCCTGACCCCCCCCTTCTGCGG
CGCCGCTTGCCTCCTATTTTTAACGCGAGAAGAGAGCCTCGGCCGTCTCT
TCCCCCTCCGTGCAGGCTAACAGCCCTCGCTTCTAATATTTCATGAGTGG
GAGTAAGTAGTACAAGGCGAGCACGCTCTGCTTTACTTCGGAGAAGAGTA
AAAGTTTCATTTATCCAAGCAACCCAAAGCGAATTAGTTCCTCTCCTCGC
TTGAAAACACTGCCGCCTGCTGAATAACAACACCAGTTCAATCAACCCAG
AGCAATAATTGAGTTCCTCTCCTCGCTTGAAAGTGTTTCTGTCTGTTGAA
TAAAATAACAACACCAAATCGTCCAAGGTGCGGTTACATCGGAGACTTTT
ACCAGAACGTCTACCTGGACGCCATGTGCACGGACTTGCAAGGGAACATC
GAGGCAGTCGCGGGCCCGGCACTCGTGGTGGTCATCCTCATGTTCCTATC
CTTCTGCATACAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9103:495..3207-

>mRNA_L-elsbetiae_contig9103.18134.1 ID=mRNA_L-elsbetiae_contig9103.18134.1|Name=mRNA_L-elsbetiae_contig9103.18134.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig9103:495..3207- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTCTGATTGACTCTAACATCACAGTCATCACGGACCAACAGATGGG
TCTGATTGACTCTAACATCACAGTCATCACGGACCAACAGGCATTCATGG
GGGACCTGCGAGACGAGATGAACGAGACGCTCGGCTCCTTGGCAGACACT
CTGGATAGCCTTGTGGTCGACCTCGACGCCCTGGCCGAGGACTTGAGGAG
CCTGAACGACGTCGTTATGGGGGCCAACAACTTCACCAAGCATTCATGGG
GGACCTGCGAGACGAGATGAACGAGACGCTCGGCTCCTTGGCAGACACTC
TGGATAGCCTTGTGGTCGACCTCGACGCCCTGGCCGAGGACTTGAGGAGC
CTGAACGACGTCGTTATGGGGGCCAACAACTTCACCAAGTGCGGTTACAT
CGGAGACTTTTACCAGAACGTCTACCTGGACGCCATGTGCACGGACTTGC
AAGGGAACATCGAGGCAGTCGCGGGCCCGGCACTCGTGGTGGTCATCCTC
ATGTTCCTATCCTTCTGCATACAGGTGCGGTTACATCGGAGACTTTTACC
AGAACGTCTACCTGGACGCCATGTGCACGGACTTGCAAGGGAACATCGAG
GCAGTCGCGGGCCCGGCACTCGTGGTGGTCATCCTCATGTTCCTATCCTT
CTGCATACAG
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