mRNA_L-elsbetiae_contig9103.18135.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9103.18135.1
Unique NamemRNA_L-elsbetiae_contig9103.18135.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9103.18135.1 vs. uniprot
Match: D8LDC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC8_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.890e-15
Identity = 35/55 (63.64%), Postives = 47/55 (85.45%), Query Frame = -2 
Query:    3 QNELEPLDDFVSEDFVGEVDVEESTEEIDQLLEDLPPNPFDWDNRTHQDSLDNFF 167
            Q+EL PLDDFV  DFVG++D+ E ++EID LLED+PP+P DWD+R HQDS+D+F+
Sbjct:  504 QSELGPLDDFVETDFVGDIDMSELSDEIDDLLEDMPPSPLDWDDRDHQDSVDSFY 558
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9103.18135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDC8_ECTSI1.890e-1563.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9103contigL-elsbetiae_contig9103:7406..7727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size322
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816985.8949502-CDS-L-elsbetiae_contig9103:7405..77261622816985.8949502-CDS-L-elsbetiae_contig9103:7405..7726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9103 7406..7726 +
1691683962.3449965-CDS-L-elsbetiae_contig9103:7405..77261691683962.3449965-CDS-L-elsbetiae_contig9103:7405..7726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9103 7406..7726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9103.18135.1prot_L-elsbetiae_contig9103.18135.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9103 7406..7726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9103.18135.1

>prot_L-elsbetiae_contig9103.18135.1 ID=prot_L-elsbetiae_contig9103.18135.1|Name=mRNA_L-elsbetiae_contig9103.18135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
RKKLSRESWCVLLSQSNGLGGRSSRSWSISSVDSSTSTSPTKSSLTKSSS
GSSSFCVWFCFVSRRFHKRLLRVNKQGVCLFLPEGIDRLPAIEPTIHSQE
ELWGQRG
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mRNA from alignment at L-elsbetiae_contig9103:7406..7727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9103.18135.1 ID=mRNA_L-elsbetiae_contig9103.18135.1|Name=mRNA_L-elsbetiae_contig9103.18135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=322bp|location=Sequence derived from alignment at L-elsbetiae_contig9103:7406..7727+ (Laminarionema elsbetiae ELsaHSoW15)
AGGAAGAAGTTGTCGAGGGAGTCCTGGTGCGTCCTGTTGTCCCAGTCGAA
CGGGTTAGGCGGCAGGTCCTCCAGGAGCTGGTCGATCTCCTCGGTCGACT
CCTCGACGTCCACTTCGCCCACGAAGTCCTCGCTCACGAAGTCGTCCAGC
GGCTCCAGCTCGTTCTGCGTTTGGTTTTGTTTTGTTTCGCGGCGGTTTCA
CAAAAGGTTGTTGCGGGTGAATAAACAGGGTGTGTGCCTATTTTTACCGG
AGGGGATAGATAGACTTCCTGCAATAGAGCCCACAATTCATTCTCAAGAG
GAGCTGTGGGGGCAGCGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9103:7406..7727+

>mRNA_L-elsbetiae_contig9103.18135.1 ID=mRNA_L-elsbetiae_contig9103.18135.1|Name=mRNA_L-elsbetiae_contig9103.18135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig9103:7406..7727+ (Laminarionema elsbetiae ELsaHSoW15)
AGGAAGAAGTTGTCGAGGGAGTCCTGGTGCGTCCTGTTGTCCCAGTCGAA
CGGGTTAGGCGGCAGGTCCTCCAGGAGCTGGTCGATCTCCTCGGTCGACT
CCTCGACGTCCACTTCGCCCACGAAGTCCTCGCTCACGAAGTCGTCCAGC
GGCTCCAGCTCGTTCTGCGTTTGGTTTTGTTTTGTTTCGCGGCGGTTTCA
CAAAAGGTTGTTGCGGGTGAATAAACAGGGTGTGTGCCTATTTTTACCGG
AGGGGATAGATAGACTTCCTGCAATAGAGCCCACAATTCATTCTCAAGAG
GAGCTGTGGGGGCAGCGCGGGAGGAAGAAGTTGTCGAGGGAGTCCTGGTG
CGTCCTGTTGTCCCAGTCGAACGGGTTAGGCGGCAGGTCCTCCAGGAGCT
GGTCGATCTCCTCGGTCGACTCCTCGACGTCCACTTCGCCCACGAAGTCC
TCGCTCACGAAGTCGTCCAGCGGCTCCAGCTCGTTCTGCGTTTGGTTTTG
TTTTGTTTCGCGGCGGTTTCACAAAAGGTTGTTGCGGGTGAATAAACAGG
GTGTGTGCCTATTTTTACCGGAGGGGATAGATAGACTTCCTGCAATAGAG
CCCACAATTCATTCTCAAGAGGAGCTGTGGGGGCAGCGCGGG
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