mRNA_L-elsbetiae_contig9.18003.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9.18003.1
Unique NamemRNA_L-elsbetiae_contig9.18003.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9.18003.1 vs. uniprot
Match: A0A6H5JP29_9PHAE (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP29_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.490e-15
Identity = 64/165 (38.79%), Postives = 79/165 (47.88%), Query Frame = 1 
Query:   13 KGNREDCEDFGPQRNLELCEVRGVVRVEAYLPSSSETLXXXXXXXXXXXXXXXGV---EGSAAAETTRKDSAEDALVLPLRIKXXXXXXXXXSAAAPARPDRRGTADAGEGRGCERVLPTVADAGHEEECRSRKQQRRLLWEARATERRRGAAEMLAAVQGAISD 498
            + +R+DC   G ++N  LCEVR V+RVEAYLP SS TL                    +G+  AE    D   D  +LPLRIK          A   A  + +           ER     ADA H+EECR RK++RR   +AR  E RR  AEM A VQGAI D
Sbjct: 2135 QADRDDC---GRRKNEGLCEVRSVIRVEAYLPDSSTTLTLRVKVPPSSSTSSKTTAESDGTVPAEVHNNDGGADQPMLPLRIKVVTSSCIKGGAPVAADTECK-----------ERRQSLCADAEHKEECRLRKKRRRAYRDARNAEARRVDAEMFAVVQGAIED 2285
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BLAST of mRNA_L-elsbetiae_contig9.18003.1 vs. uniprot
Match: D8LLD6_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD6_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.500e-10
Identity = 57/164 (34.76%), Postives = 72/164 (43.90%), Query Frame = 1 
Query:   16 GNREDCEDFGPQRNLELCEVRGVVRVEAYLPSSSETLXXXXXXXXXXXXXXXGV---EGSAAAETTRKDSAEDALVLPLRIKXXXXXXXXXSAAAPARPDRRGTADAGEGRGCERVLPTVADAGHEEECRSRKQQRRLLWEARATERRRGAAEMLAAVQGAISD 498
            G+ +D  D G       CEVR V+RVEAYLP SS T+                    +G+   E  + +  ED   LPLRI           A   A  + +           ER      DA H++ECR RK++RR   +AR  E RRG AEM A VQ AI D
Sbjct: 2621 GHEQDDRDAG------RCEVRTVIRVEAYLPDSSTTVALHVKVPPSPSTSPKTTVEGDGTLPTEVHKNEGGEDQATLPLRINVATSSCIKGGAPVAADTECK-----------ERRESLYVDAEHKQECRLRKKRRRACRDARYAEARRGDAEMFAVVQEAIGD 2767
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9.18003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP29_9PHAE2.490e-1538.79AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
D8LLD6_ECTSI1.500e-1034.76AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9contigL-elsbetiae_contig9:55659..56244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue3.4e-10
Seed eggNOG ortholog2880.D8LLD6
Hectar predicted targeting categoryother localisation
EggNOG OGs2BWSQ@1,2QVEV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size586
Cds size585
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816974.7322726-CDS-L-elsbetiae_contig9:55658..562431622816974.7322726-CDS-L-elsbetiae_contig9:55658..56243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9 55659..56243 +
1691683953.7485952-CDS-L-elsbetiae_contig9:55658..562431691683953.7485952-CDS-L-elsbetiae_contig9:55658..56243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9 55659..56243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9.18003.1prot_L-elsbetiae_contig9.18003.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9 55659..56243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9.18003.1

>prot_L-elsbetiae_contig9.18003.1 ID=prot_L-elsbetiae_contig9.18003.1|Name=mRNA_L-elsbetiae_contig9.18003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
LPSGKGNREDCEDFGPQRNLELCEVRGVVRVEAYLPSSSETLTLRVRVPA
AASASGRGVEGSAAAETTRKDSAEDALVLPLRIKISTTTRGKGSAAAPAR
PDRRGTADAGEGRGCERVLPTVADAGHEEECRSRKQQRRLLWEARATERR
RGAAEMLAAVQGAISDSHVSLLARKSAGTATQQHGQGLDKHANGG
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mRNA from alignment at L-elsbetiae_contig9:55659..56244+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9.18003.1 ID=mRNA_L-elsbetiae_contig9.18003.1|Name=mRNA_L-elsbetiae_contig9.18003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=586bp|location=Sequence derived from alignment at L-elsbetiae_contig9:55659..56244+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCCCTCTGGCAAAGGCAACCGGGAGGACTGTGAAGACTTCGGCCCCCA
AAGAAACCTTGAGCTGTGCGAGGTTCGCGGGGTGGTTCGGGTGGAGGCCT
ACCTTCCTAGCTCTTCGGAGACCTTGACGCTTCGTGTCAGGGTCCCTGCC
GCTGCTTCAGCATCTGGCCGGGGCGTCGAGGGTAGCGCAGCAGCGGAAAC
AACCAGAAAGGACAGCGCAGAAGACGCTTTAGTACTTCCTCTTCGCATCA
AGATTTCCACTACTACAAGAGGCAAGGGATCCGCAGCAGCACCAGCAAGA
CCAGATAGACGCGGGACGGCAGACGCGGGCGAGGGCCGTGGCTGTGAAAG
GGTGCTTCCCACCGTCGCAGACGCGGGACACGAGGAAGAGTGCCGGTCGC
GGAAGCAGCAGAGGCGGTTGCTTTGGGAGGCCCGCGCCACGGAAAGGAGG
AGAGGTGCCGCGGAAATGCTCGCCGCAGTTCAAGGAGCTATATCTGATTC
CCATGTCAGCCTACTTGCCAGGAAAAGCGCTGGGACTGCTACACAACAGC
ATGGCCAGGGCCTCGACAAACACGCAAATGGTGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9:55659..56244+

>mRNA_L-elsbetiae_contig9.18003.1 ID=mRNA_L-elsbetiae_contig9.18003.1|Name=mRNA_L-elsbetiae_contig9.18003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig9:55659..56244+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCCCTCTGGCAAAGGCAACCGGGAGGACTGTGAAGACTTCGGCCCCCA
AAGAAACCTTGAGCTGTGCGAGGTTCGCGGGGTGGTTCGGGTGGAGGCCT
ACCTTCCTAGCTCTTCGGAGACCTTGACGCTTCGTGTCAGGGTCCCTGCC
GCTGCTTCAGCATCTGGCCGGGGCGTCGAGGGTAGCGCAGCAGCGGAAAC
AACCAGAAAGGACAGCGCAGAAGACGCTTTAGTACTTCCTCTTCGCATCA
AGATTTCCACTACTACAAGAGGCAAGGGATCCGCAGCAGCACCAGCAAGA
CCAGATAGACGCGGGACGGCAGACGCGGGCGAGGGCCGTGGCTGTGAAAG
GGTGCTTCCCACCGTCGCAGACGCGGGACACGAGGAAGAGTGCCGGTCGC
GGAAGCAGCAGAGGCGGTTGCTTTGGGAGGCCCGCGCCACGGAAAGGAGG
AGAGGTGCCGCGGAAATGCTCGCCGCAGTTCAAGGAGCTATATCTGATTC
CCATGTCAGCCTACTTGCCAGGAAAAGCGCTGGGACTGCTACACAACAGC
ATGGCCAGGGCCTCGACAAACACGCAAATGGTGGCCTTCCCTCTGGCAAA
GGCAACCGGGAGGACTGTGAAGACTTCGGCCCCCAAAGAAACCTTGAGCT
GTGCGAGGTTCGCGGGGTGGTTCGGGTGGAGGCCTACCTTCCTAGCTCTT
CGGAGACCTTGACGCTTCGTGTCAGGGTCCCTGCCGCTGCTTCAGCATCT
GGCCGGGGCGTCGAGGGTAGCGCAGCAGCGGAAACAACCAGAAAGGACAG
CGCAGAAGACGCTTTAGTACTTCCTCTTCGCATCAAGATTTCCACTACTA
CAAGAGGCAAGGGATCCGCAGCAGCACCAGCAAGACCAGATAGACGCGGG
ACGGCAGACGCGGGCGAGGGCCGTGGCTGTGAAAGGGTGCTTCCCACCGT
CGCAGACGCGGGACACGAGGAAGAGTGCCGGTCGCGGAAGCAGCAGAGGC
GGTTGCTTTGGGAGGCCCGCGCCACGGAAAGGAGGAGAGGTGCCGCGGAA
ATGCTCGCCGCAGTTCAAGGAGCTATATCTGATTCCCATGTCAGCCTACT
TGCCAGGAAAAGCGCTGGGACTGCTACACAACAGCATGGCCAGGGCCTCG
ACAAACACGCAAATGGTGGC
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