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Homology
BLAST of mRNA_L-elsbetiae_contig1013.179.1 vs. uniprot
Match: D7FVY8_ECTSI (Zinc finger, FYVE domain containing 19, isoform CRA_g n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVY8_ECTSI) HSP 1 Score: 262 bits (670), Expect = 3.360e-80 Identity = 192/394 (48.73%), Postives = 238/394 (60.41%), Query Frame = 1
Query: 199 FAERLARLHGTSMQ---GGSNTSSALQGRLGALTGGRVPEQGAEEEFNSRLASLISEREGKSSSADDLHARLAGLSAGTTAAAVDGTASSDMQKMYDVPEDFSEEWQDIDDLLEEVLEGEDRA-TAGNASVVEESHVNKKLSDLDALLKAPAESTTV---ERADKMGNEARKAMEAFLGGG----IGAGREQQDKLRRDELSEEEERLLQMVSDEVRLEGHGLTSRASDLLQQPQGDMWLPVAPTGRPEVFPAGGGRATGLDAGASAGLIAQQAMDEARLDLTSEGSSRKEGTE--QXXXXXXXXXXXXXPLRQA-SSAWCCVCSEDATLRCKHCEAESGQDEPELFCAXXXXXXXXXXXEMKAHQPQALSRGLEEREEEGGRRKGIRGWRQRK 1338
A RLARL G S GG +T LQ RL AL+G PE GAEE+FN+RLASL + R+ SSA + A + TA+ ++ YDVP DFS+EW+D+DDLL LEG + + G S++ ES V+ KLS+LD LL+A A T+ A++ +A+EAFLGGG GAGR Q +R L EEERLLQMVSD+VRLEG GL + AS +Q+ G+MWLPVAPTGRPE+ G G A A A LIAQQAMDEARL LTS G K +E + P +A SS+WCC+CSEDA+LRC+ CE E+GQDEPELFCA EM+ HQPQALSR ++ EE+G RKG R WR+RK
Sbjct: 8 LAARLARLQGLSTSRSSGGHSTGVGLQERLDALSG-HCPE-GAEEDFNNRLASLSAARD-TPSSAXXXXXXXXXXXXXSDAGSKSATAAP-RKRQYDVPGDFSDEWEDLDDLLATALEGSKGSPSTGEPSLLRESDVDGKLSELDVLLRAEASRATLGGSAPAERAAATVDQAVEAFLGGGGAGGDGAGRGDQG-MRGGSLDVEEERLLQMVSDQVRLEGGGLINEASAPVQEKPGEMWLPVAPTGRPEISSPAAGANLGTGA-ADARLIAQQAMDEARLGLTSTGDGFKSASETGKNASHRDRRQAAACPKDEALSSSWCCICSEDASLRCRPCERENGQDEPELFCARCFKETHRGDSEMEVHQPQALSRARQQ-EEDG--RKGRRTWRRRK 392
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | zinc finger, FYVE domain containing 19, isoform CRA_g |
| Ec32 ortholog | Ec-01_002660.1 |
| Exons | 3 |
| Model size | 1341 |
| Cds size | 1164 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815244.533135-CDS-L-elsbetiae_contig1013:11271..11814 | 1622815244.533135-CDS-L-elsbetiae_contig1013:11271..11814 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1013 11272..11814 - |
| 1691682792.5235353-CDS-L-elsbetiae_contig1013:11271..11814 | 1691682792.5235353-CDS-L-elsbetiae_contig1013:11271..11814 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1013 11272..11814 - |
| 1622815244.543007-CDS-L-elsbetiae_contig1013:12358..12667 | 1622815244.543007-CDS-L-elsbetiae_contig1013:12358..12667 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1013 12359..12667 - |
| 1691682792.5325556-CDS-L-elsbetiae_contig1013:12358..12667 | 1691682792.5325556-CDS-L-elsbetiae_contig1013:12358..12667 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1013 12359..12667 - |
| 1622815244.5521986-CDS-L-elsbetiae_contig1013:13264..13576 | 1622815244.5521986-CDS-L-elsbetiae_contig1013:13264..13576 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1013 13265..13576 - |
| 1691682792.5418534-CDS-L-elsbetiae_contig1013:13264..13576 | 1691682792.5418534-CDS-L-elsbetiae_contig1013:13264..13576 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1013 13265..13576 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815244.563475-UTR-L-elsbetiae_contig1013:13576..13753 | 1622815244.563475-UTR-L-elsbetiae_contig1013:13576..13753 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1013 13577..13753 - |
| 1691682792.551279-UTR-L-elsbetiae_contig1013:13576..13753 | 1691682792.551279-UTR-L-elsbetiae_contig1013:13576..13753 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1013 13577..13753 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1013.179.1 >prot_L-elsbetiae_contig1013.179.1 ID=prot_L-elsbetiae_contig1013.179.1|Name=mRNA_L-elsbetiae_contig1013.179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=388bp
MSNDQLNFAERLARLHGTSMQGGSNTSSALQGRLGALTGGRVPEQGAEEE
FNSRLASLISEREGKSSSADDLHARLAGLSAGTTAAAVDGTASSDMQKMY
DVPEDFSEEWQDIDDLLEEVLEGEDRATAGNASVVEESHVNKKLSDLDAL
LKAPAESTTVERADKMGNEARKAMEAFLGGGIGAGREQQDKLRRDELSEE
EERLLQMVSDEVRLEGHGLTSRASDLLQQPQGDMWLPVAPTGRPEVFPAG
GGRATGLDAGASAGLIAQQAMDEARLDLTSEGSSRKEGTEQQQQQQQQQQ
QQQQPLRQASSAWCCVCSEDATLRCKHCEAESGQDEPELFCAMCFKEGHR
DDPEMKAHQPQALSRGLEEREEEGGRRKGIRGWRQRK* back to topmRNA from alignment at L-elsbetiae_contig1013:11272..13753- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1013.179.1 ID=mRNA_L-elsbetiae_contig1013.179.1|Name=mRNA_L-elsbetiae_contig1013.179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2482bp|location=Sequence derived from alignment at L-elsbetiae_contig1013:11272..13753- (Laminarionema elsbetiae ELsaHSoW15)
GTCAGTAGTTCCTCCGCGTTTTGCTGACAAGCGGGGGAGGGGGGATGGGG
GAGGCGGGTACAGGGTACAGGTGGGCAGGGTTAAGGGAGAGGGAAAGAAG
AAAGAGGAAGGTGCAGAAGAGTACCGACATTCCGGAAGGCCGGAAGAACC
GAATGCGTTGTTGTTGCCGCGAAAAAAATGTCCAACGATCAACTAAATTT
TGCGGAGAGATTAGCTCGCCTTCACGGAACCAGCATGCAGGGAGGCAGCA
ACACCAGCAGCGCGTTGCAGGGGCGGTTGGGCGCGTTGACTGGAGGACGT
GTTCCCGAACAAGGCGCAGAAGAAGAATTCAACAGCCGGTTGGCGTCATT
GATTTCAGAGAGAGAGGGTAAATCGTCCTCTGCAGACGACCTCCACGCGC
GGCTCGCTGGATTGTCTGCCGGCACTACTGCTGCTGCTGTTGATGGGACG
GCGTCTTCCGACATGCAAAAAATGTACGATGTGCCGGAGGTGCGACAGCG
TTTTGACCCTGCAGGCAATCGTATTCAAATCGTACGCAGAACAACACACT
TGCTGAGTGTGGGGCTGTGGACGCTGAGTATTATAGAGTACCGTCATCAT
GCGAAGGTTCGCACCCCCGTGTCAGCATTTTTCTGAACATGTGAAGCGTA
TTTCTCCACAACCAGGAGGGTGCGAACACTAACCGATACCTCTCTGGGAA
GCCCCCGACGAGACGTTTCGAAAACCACCCTTTTCGGCAGTGGTATCCTC
CTGGTTGTGGAGAAATACGCTTTAGAAAAATGCTAACACGGGGGTGCGAA
CCCTCGCATGATTACGGTATGCACATCGAAGGATGTGGTTGAACTTTTAA
AAGGGCTCTGTGTACAAAGCTAGACTACATAAGTCTAGTCTAGGAGGTAT
CTACCTACCCACATAGATAGTTTTTAGACTCGATATTCACATGTGTGCAT
AGGTATGTGTGCAGCAAACTTTGTGGAGATGAACGCCATACAATAGGATG
GACATTGGCAGAAGTAGGGCCCTCAGCCAATAAGCAAAAGAGCAACCGCC
GTCTTTATCGATACCAGCCGCTGAAATATGTTACAGGACTTTTCCGAAGA
ATGGCAAGATATCGATGATCTATTAGAGGAAGTACTTGAGGGGGAAGATC
GCGCTACCGCCGGCAACGCATCTGTGGTGGAGGAATCCCACGTCAACAAG
AAGCTCAGCGACCTCGATGCGCTGCTGAAAGCCCCGGCAGAAAGCACTAC
TGTCGAGCGCGCTGACAAGATGGGGAACGAGGCTCGTAAGGCAATGGAAG
CGTTTCTTGGAGGAGGGATTGGGGCGGGGAGGGAGCAACAGGATAAATTA
CGACGGGACGAGCTCAGCGAGGAGGAGGAGCGGCTGCTCCAGATGGTAAG
TTATGCACTTAACGACGCTTTGTGATGTTGTCGGTGTAGAGCTCTTATAG
TAGTACCCTGTGGTACATTTTAAAGCTCCACTGGGGGCTGAGCGTGGATA
TACCGGTTGGTCTTCCCTGGTTTGTATGGGTGGCAGCTCGCTGCCCGCGT
GTAAACACATTTCCATCGTGCTCAATGATCCGTGTAATGGTTCTCGTGAC
CGGCCGTTCGTGCGTTCACTTATTTCAGCAATACATTGGAGTTGTGAGGA
AATAACATGGGGCCCAAAGTGTGCACCAAATCAAGATTCCCTCGCCGTTC
CTTCCTACGTAGTTGGGCTCTCTACTTTTCTGTGTATCGTAAAGAGGTAA
AAGTTAGTGCTTCCCTTCTCTGGGTGAAAATACACTTGGAGCATCCTCAG
CTTTTTTCTGTGTGCTTCACCGCGACTTCGGAGCAGCGTTGCTGCAAGCT
GCTCGCGAAGTATTCCTACACGCTCTGTTCGCCACGGATCGCTTGTTATT
AGCCGATCCCACGCGTAATATGTCTGTCTCTGCGCTCAGGTGTCTGACGA
AGTTCGACTCGAAGGCCACGGGCTCACCAGCCGAGCGTCCGACCTACTGC
AGCAGCCGCAGGGAGATATGTGGCTCCCAGTCGCCCCTACCGGCCGGCCG
GAAGTCTTCCCTGCTGGTGGCGGCAGGGCCACGGGCCTTGACGCTGGAGC
GTCCGCAGGACTTATTGCGCAGCAGGCGATGGATGAGGCTCGGTTAGATC
TCACCAGCGAGGGCTCGTCCCGAAAAGAGGGCACGGAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCCTCCGGCAGGCTTCCTC
CGCGTGGTGCTGTGTTTGCTCGGAGGACGCGACTCTACGGTGCAAGCACT
GCGAGGCGGAGAGCGGGCAGGATGAGCCGGAGCTGTTTTGCGCGATGTGC
TTCAAGGAGGGCCACCGAGATGATCCCGAGATGAAGGCACATCAGCCGCA
AGCGCTGTCTAGGGGATTGGAGGAAAGGGAGGAGGAAGGCGGCCGGAGAA
AGGGGATTCGAGGCTGGCGGCAACGAAAGTAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1013:11272..13753- >mRNA_L-elsbetiae_contig1013.179.1 ID=mRNA_L-elsbetiae_contig1013.179.1|Name=mRNA_L-elsbetiae_contig1013.179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2328bp|location=Sequence derived from alignment at L-elsbetiae_contig1013:11272..13753- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCAACGATCAACTAAATTTTGCGGAGAGATTAGCTCGCCTTCACGG
AACCAGCATGCAGGGAGGCAGCAACACCAGCAGCGCGTTGCAGGGGCGGT
TGGGCGCGTTGACTGGAGGACGTGTTCCCGAACAAGGCGCAGAAGAAGAA
TTCAACAGCCGGTTGGCGTCATTGATTTCAGAGAGAGAGGGTAAATCGTC
CTCTGCAGACGACCTCCACGCGCGGCTCGCTGGATTGTCTGCCGGCACTA
CTGCTGCTGCTGTTGATGGGACGGCGTCTTCCGACATGCAAAAAATGTAC
GATGTGCCGGAGATGTCCAACGATCAACTAAATTTTGCGGAGAGATTAGC
TCGCCTTCACGGAACCAGCATGCAGGGAGGCAGCAACACCAGCAGCGCGT
TGCAGGGGCGGTTGGGCGCGTTGACTGGAGGACGTGTTCCCGAACAAGGC
GCAGAAGAAGAATTCAACAGCCGGTTGGCGTCATTGATTTCAGAGAGAGA
GGGTAAATCGTCCTCTGCAGACGACCTCCACGCGCGGCTCGCTGGATTGT
CTGCCGGCACTACTGCTGCTGCTGTTGATGGGACGGCGTCTTCCGACATG
CAAAAAATGTACGATGTGCCGGAGGACTTTTCCGAAGAATGGCAAGATAT
CGATGATCTATTAGAGGAAGTACTTGAGGGGGAAGATCGCGCTACCGCCG
GCAACGCATCTGTGGTGGAGGAATCCCACGTCAACAAGAAGCTCAGCGAC
CTCGATGCGCTGCTGAAAGCCCCGGCAGAAAGCACTACTGTCGAGCGCGC
TGACAAGATGGGGAACGAGGCTCGTAAGGCAATGGAAGCGTTTCTTGGAG
GAGGGATTGGGGCGGGGAGGGAGCAACAGGATAAATTACGACGGGACGAG
CTCAGCGAGGAGGAGGAGCGGCTGCTCCAGATGGACTTTTCCGAAGAATG
GCAAGATATCGATGATCTATTAGAGGAAGTACTTGAGGGGGAAGATCGCG
CTACCGCCGGCAACGCATCTGTGGTGGAGGAATCCCACGTCAACAAGAAG
CTCAGCGACCTCGATGCGCTGCTGAAAGCCCCGGCAGAAAGCACTACTGT
CGAGCGCGCTGACAAGATGGGGAACGAGGCTCGTAAGGCAATGGAAGCGT
TTCTTGGAGGAGGGATTGGGGCGGGGAGGGAGCAACAGGATAAATTACGA
CGGGACGAGCTCAGCGAGGAGGAGGAGCGGCTGCTCCAGATGGTGTCTGA
CGAAGTTCGACTCGAAGGCCACGGGCTCACCAGCCGAGCGTCCGACCTAC
TGCAGCAGCCGCAGGGAGATATGTGGCTCCCAGTCGCCCCTACCGGCCGG
CCGGAAGTCTTCCCTGCTGGTGGCGGCAGGGCCACGGGCCTTGACGCTGG
AGCGTCCGCAGGACTTATTGCGCAGCAGGCGATGGATGAGGCTCGGTTAG
ATCTCACCAGCGAGGGCTCGTCCCGAAAAGAGGGCACGGAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCCTCCGGCAGGCTTC
CTCCGCGTGGTGCTGTGTTTGCTCGGAGGACGCGACTCTACGGTGCAAGC
ACTGCGAGGCGGAGAGCGGGCAGGATGAGCCGGAGCTGTTTTGCGCGATG
TGCTTCAAGGAGGGCCACCGAGATGATCCCGAGATGAAGGCACATCAGCC
GCAAGCGCTGTCTAGGGGATTGGAGGAAAGGGAGGAGGAAGGCGGCCGGA
GAAAGGGGATTCGAGGCTGGCGGCAACGAAAGTAGGTGTCTGACGAAGTT
CGACTCGAAGGCCACGGGCTCACCAGCCGAGCGTCCGACCTACTGCAGCA
GCCGCAGGGAGATATGTGGCTCCCAGTCGCCCCTACCGGCCGGCCGGAAG
TCTTCCCTGCTGGTGGCGGCAGGGCCACGGGCCTTGACGCTGGAGCGTCC
GCAGGACTTATTGCGCAGCAGGCGATGGATGAGGCTCGGTTAGATCTCAC
CAGCGAGGGCTCGTCCCGAAAAGAGGGCACGGAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCCCCTCCGGCAGGCTTCCTCCGCG
TGGTGCTGTGTTTGCTCGGAGGACGCGACTCTACGGTGCAAGCACTGCGA
GGCGGAGAGCGGGCAGGATGAGCCGGAGCTGTTTTGCGCGATGTGCTTCA
AGGAGGGCCACCGAGATGATCCCGAGATGAAGGCACATCAGCCGCAAGCG
CTGTCTAGGGGATTGGAGGAAAGGGAGGAGGAAGGCGGCCGGAGAAAGGG
GATTCGAGGCTGGCGGCAACGAAAGTAG back to top
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