mRNA_L-elsbetiae_contig8871.17896.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8871.17896.1
Unique NamemRNA_L-elsbetiae_contig8871.17896.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8871.17896.1 vs. uniprot
Match: D7FU28_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU28_ECTSI)

HSP 1 Score: 398 bits (1023), Expect = 4.340e-123
Identity = 217/363 (59.78%), Postives = 256/363 (70.52%), Query Frame = 3 
Query:    3 VCLEYCTDLGSAFMATQYGFECWCSPDGGLDYNRHYDVVGEDAVCDMDCMGDKAEICGGYDSFSLYKLVPASG--CSGTPVEAYEQCGGSDWTGSTCCSDGHECTDMVDSGCYSQCRP-ISTDETTPPPIDATGEPSPSPVSXXXXXXXXXAXXXVAXAPEPEXXXXXXXXXXXXXXXPVPTNADDCMVVIIEGEDLALTGAWSVVQDSAASGSKYIVWQGLTESDNNSSPDNGDIISTSIEIAIPGTYSFKWLMRQPAGVESDKANDTWLYFPDADRFGPKGKSSSYGTFIKVFGNAVGSDFKYSGTAEEANHSKSQIAVEFAEAGRYTMEISGRSHGHEIDQIILFGESLSVEDA--SSGC 1076
            VCL +CT+LG+AFMATQ+GFECWCS D  LDY RHY +   DAVCDM C GDK + CGG++SF LYKL   S   CSGTPVEAYEQCGG DWTGSTCC DG++CT MV+ GCY+QCRP ++ +  TP P+  T  P               A     X     XXXXXXXXXXXXXX   PT+   CMVV +E EDL + G W VV D+ ASG KYI W+GL+E  NN  P +GDI+S SI++   GTYSFKWLMRQP GVESDK ND WL FPDA R+GP G   SYGTFIKV+G A   DF+YSGT E++ H  +QIAVEF EAG Y MEISGRSHG +IDQI++FGE LSV++A  ++GC
Sbjct:  424 VCLAHCTELGAAFMATQFGFECWCSADELLDYERHYQMNDADAVCDMSCRGDKTQPCGGFNSFDLYKLQTTSTVLCSGTPVEAYEQCGGKDWTGSTCCMDGYDCTQMVEDGCYAQCRPSVTVEPITPSPVSTTRPP--------------VALSTSXXXXXXXXXXXXXXXXXXXXXVSEPTSG--CMVVRMEAEDLPVLGDWRVVNDADASGGKYITWEGLSEGQNNGDPADGDIMSASIQVPTAGTYSFKWLMRQPDGVESDKGNDAWLNFPDAKRYGPAGTQESYGTFIKVYGRATNGDFEYSGTGEDS-HGHTQIAVEFEEAGEYAMEISGRSHGLQIDQILVFGEDLSVDEAVANTGC 769
[Close]
BLAST of mRNA_L-elsbetiae_contig8871.17896.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 5.190e-83
Identity = 196/455 (43.08%), Postives = 236/455 (51.87%), Query Frame = 3 
Query:    3 VCLEYCTDLGSAFMATQYGFECWCSPDGGLDYNRHYDVVGEDAVCDMDCMGDKAEICGGYDSFSLYKLVPASGCSGTPVEAYEQCGGSDWTGSTCCSDGHECTDMVDSGCYSQCRP-----------------ISTDETTPPP-------IDATGEPSPSPVSXXXXXXXXXAXXXVAXAPEPEXXXXXXXXXXXXXXX-------------------------------------------------------------------------PVPTNADDCMVVIIEGEDLALTGAWSVVQDSAASGSKYIVWQGLTESDNNSSPDNGDIISTSIEIAIPGTYSFKWLMRQPAGVESDKANDTWLYFPDADRFGPKGKSSSYGTFIKVFGNAVGSDFKYSGTAEEANHSKSQIAVEFAEAGRYTMEISGRSHGHEIDQIILFGESLSVEDASSGC 1076
            VCLEYC D  + +MATQYG+ECWCS D  ++Y+RH      D VCD  C GD A+ICGG+D+F LYK+   +  +G   + Y  C   D        +     DM  + C + C                   +S DE               +G+P+ +                   AP P XXXXXXXXXXXXXXX                                                                         P PTN  DCMVVIIE EDL + G W +VQD+AASG  YI W+GL+E+ NNS P +GDIISTS++I   GTYSFKW MRQP GVESDKAND+WL FPDADRFGP G S SYGTF+KV+GNA    FKY GTAEE N   +QIA+EFA AG Y MEI GRSHGH+IDQI+LFG+SL V+DA +GC
Sbjct:  461 VCLEYCLDRRATYMATQYGYECWCSVDAEVEYDRH-----SDGVCDHACGGDAADICGGFDAFDLYKITEPTEPTG---DEYVGCFADDREDRLLGDEIKLQPDMTQAVCRTYCEERDAYFYATQYGDECWCGMSNDEEDYKRHGRGSCLAGCSGDPTVACGGFDAFNLFKFDGIAEPIAPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAPTPTN--DCMVVIIEAEDLPVNGDWRIVQDNAASGGAYITWEGLSEAQNNSDPADGDIISTSVQIPTAGTYSFKWAMRQPDGVESDKANDSWLNFPDADRFGPAGTSKSYGTFVKVYGNAADGVFKYQGTAEEENGDHTQIAIEFAAAGEYEMEIGGRSHGHQIDQIVLFGDSLKVDDAVAGC 905
[Close]
BLAST of mRNA_L-elsbetiae_contig8871.17896.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 3.720e-70
Identity = 182/385 (47.27%), Postives = 214/385 (55.58%), Query Frame = 3 
Query:    3 VCLEYCTDLGSAFMATQYGFECWCS-PDGGLDYNRHYDVVGEDAVCDMDCMGDKAEICG------------------------GYDSFSLYKLVP-ASGCSGTPVEAYEQCGGSDWTGSTCCSDGHECTDMVDSGCYSQCRPISTDETTPPPIDATGEPSPSPVSXXXXXXXXXAXXXVAXAPEPEXXXXXXXXXXXXXXXPVPTNADDCMVVIIEGEDLALTGAWSVVQDSAASGSKYIVWQGLTESDNNSSPDNGDIISTSIEIAIPGTYSFKWLMRQPAGVESDKANDTWLYFPDADRFGPKGKSSSYGTFIKVFGNAVGSDFKYSGTAEEANHSKSQIAVEFAEAGRYTMEISGRSHGHEIDQIILFGESL-SVEDASSGC 1076
            VC  YC +  + F ATQYG ECWC   +   DY RH    G  + C   C GD    CG                        G+D+F+L+K    A   + TP                                            TP P+ A          XXXXXXXXX XXX  X     XXXXXXXXXXXXXXX      +DCMVVIIE EDL + G W +VQD+AASG  YI W+GL+E+ NN  P +GDIISTS++I   GTYSFKW MRQP GVESDKAND+WL FPDADRFGP   S SYGTF+KV+GNA    FKY GTAE+ + + +QIA+EFA AG Y MEI GRSHGH+IDQI+LFG S  + EDA +GC
Sbjct:  139 VCRTYCEERDAYFYATQYGDECWCGMSEDEQDYKRH----GRGS-CLAGCSGDPTVACGRDFQVVIYKHESFQPFLAVTLVPGGFDAFNLFKFDGVAEPVAPTPGPXXX-------------------------------XXXXVSALTPEPVAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNDCMVVIIEAEDLPVNGDWRIVQDNAASGGAYITWEGLSEAQNNRDPGDGDIISTSVQIPTAGTYSFKWAMRQPDGVESDKANDSWLNFPDADRFGPADTSKSYGTFVKVYGNAADGVFKYQGTAEDEDGAHTQIAIEFAAAGEYEMEIGGRSHGHQIDQIVLFGGSFHTAEDAVAGC 487
[Close]
BLAST of mRNA_L-elsbetiae_contig8871.17896.1 vs. uniprot
Match: A0A6H5KHF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF5_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.510e-25
Identity = 58/132 (43.94%), Postives = 80/132 (60.61%), Query Frame = 3 
Query:    6 CLEYCTDLGSAFMATQYGFECWCSPDGGLDYNRHYDVVGEDAVCDMDCMGDKAEICGGYDSFSLYKLVPA--SGCSGTP----------------VEAYEQCGGSDWTGSTCCSDGHECTDMVDSGCYSQCR 347
            C EYC+++G+A+MATQY FEC+CS D  LDY RH       A+C+M C+GD+ E CGG ++F LYK++P+  S    TP                 EA+ QC G +W GSTCC +G++C  + D+  YSQ R
Sbjct:   50 CYEYCSEMGAAYMATQYAFECFCSADEDLDYERH-----GTAMCNMGCLGDEGETCGGENAFDLYKIMPSMNSPTPATPFSEPEPEPTTPLSDGCAEAWGQCDGGNWEGSTCCVEGYKC--VPDNDWYSQVR 174
[Close]
BLAST of mRNA_L-elsbetiae_contig8871.17896.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 7.300e-25
Identity = 60/135 (44.44%), Postives = 82/135 (60.74%), Query Frame = 3 
Query:    6 CLEYCTDLGSAFMATQYGFECWCSPDGGLDYNRHYDVVGEDAVCDMDCMGDKAEICGGYDSFSLYKLVPASGCSG-------------TPV-----EAYEQCGGSDWTGSTCCSDGHECTDMVDSGCYSQCRPIS 356
            C EYC+++G+A+MATQY FEC+CS D  LDY RH       A+CD  C GD+ E CGG ++F LY+++P+                  TPV     EA+ QCGG +W GSTCC +G+EC  + ++  YSQCRP +
Sbjct:  363 CYEYCSEIGAAYMATQYAFECFCSADEDLDYERH-----GTAMCDKACRGDEGETCGGENAFDLYRIMPSMDLPTPATPFSEPEPEPTTPVSDGCAEAWGQCGGGNWEGSTCCMEGYEC--VANNDWYSQCRPTA 490
[Close]
BLAST of mRNA_L-elsbetiae_contig8871.17896.1 vs. uniprot
Match: UPI001CA33365 (hypothetical protein n=1 Tax=Seonamhaeicola marinus TaxID=1912246 RepID=UPI001CA33365)

HSP 1 Score: 111 bits (277), Expect = 1.400e-21
Identity = 66/160 (41.25%), Postives = 93/160 (58.13%), Query Frame = 3 
Query:  558 VVIIEGEDLALTGAWSVVQDSAASGSKYIVWQGLTESDNNSSPDNGDIISTSIEIAIPGTYSFKWLMRQPAGVESDKANDTWLYFPDADRFGPKGKSSSYGTFIKVFGNAVGSDFKYSGTAEEANHSKSQIAVEFAEAGRYTMEISGRSHGHEIDQIILF 1037
            +V IEGE   L G W +VQD+ ASG KYI + G     N    D+ + I +  EI+ PGTY+ KWLMRQP   E DK+ND W+ FPDA + G K  +     F K  G +    FK +G  +  +  +  + V+F + G YT+++SGRS   EID++IL+
Sbjct:  459 IVTIEGEKFDLHGHWKMVQDNIASGQKYITYFGPN---NYQKVDSKETIISQFEISSPGTYTVKWLMRQPLEAEGDKSNDAWINFPDATQIGRKPLTG----FHKFVGRSK-ERFKCNGQLD-LHGDQPWMKVKFNKPGIYTLQLSGRSEFLEIDKVILY 609
[Close]
BLAST of mRNA_L-elsbetiae_contig8871.17896.1 vs. uniprot
Match: UPI0002559DEE (Ig-like domain-containing protein n=1 Tax=Ochrovirga pacifica TaxID=1042376 RepID=UPI0002559DEE)

HSP 1 Score: 105 bits (261), Expect = 2.450e-19
Identity = 70/180 (38.89%), Postives = 97/180 (53.89%), Query Frame = 3 
Query:  534 PTNADD--CMV------VIIEGEDLALTGAWSVVQDSA-ASGSKYIVWQGLTESDNNSSPDNGDIISTSIEIAIPGTYSFKWLMRQPAGVE-SDKANDTWLYFPDADRFGPKGKSSSY--GTFIKVFGNAVGSDFKYSGTAEEANHSKSQIAVEFAEAGRYTMEISGRSHGHEIDQIILF 1037
            P+N +D  C V      ++ E E   L GAW +  D+A ASG KYI + G       +   N   IS + +I  PGTY+FKW+MRQP G   SD  ND W YF D    G   + +    G F K  G +   +F  +G A E NH++S +   F  AG YT+ +SGRSHG ++D++IL+
Sbjct:  447 PSNTEDKTCNVEEVDGLLVFEAERFELKGAWKLGTDAAKASGGKYIYYDGANSYGTVNPSHN---ISYTFKINNPGTYTFKWMMRQPEGERGSDLGNDAWFYFSDDIGKGKDKEKNDIILGQFYKFVGRSD-DNFTLNG-AVEVNHAQSWVRAVFPTAGEYTLNLSGRSHGFQLDRLILY 621
[Close]
BLAST of mRNA_L-elsbetiae_contig8871.17896.1 vs. uniprot
Match: UPI00094FF4D0 (hypothetical protein n=1 Tax=Labilibacter marinus TaxID=1477105 RepID=UPI00094FF4D0)

HSP 1 Score: 103 bits (256), Expect = 5.130e-19
Identity = 62/171 (36.26%), Postives = 95/171 (55.56%), Query Frame = 3 
Query:  561 VIIEGEDLALTGAWSVVQDSAASGSKYIVWQGLTESDNNSSPD--NGDIISTSIEIAIPGTYSFKWLMRQPAGVESDKANDTWLYFPDADRFGPKGKSSSYGTFIKVFGNAVGSDFKYSGTAEEANHSKSQ-IAVEFAEAGRYTMEISGRSHGHEIDQIILFGESLSVEDA 1064
            ++IEGE   L G W  + D  ASG +YI + G      N+ P+        T  E+   GTY+ KW+MRQP   E DK+ND W+ FPDA + G +  +     F K  G + G DF ++G  +   H K   + V+F + G YT+++SGRS   +ID+ +L+ +++S E+A
Sbjct:  456 IVIEGEHFDLHGKWEFISDKTASGGRYIQYTGA-----NNYPEVIKKHTCETQFEVKEAGTYTVKWMMRQPENAEGDKSNDAWINFPDATQIGHETITG----FNKFVGRSKG-DFGFNGQLDL--HGKQPWLTVKFDKPGFYTLQVSGRSEFLQIDKFVLY-KNMSFEEA 613
[Close]
BLAST of mRNA_L-elsbetiae_contig8871.17896.1 vs. uniprot
Match: A0A5C5WKY8_9BACT (Uncharacterized protein n=1 Tax=Rubripirellula amarantea TaxID=2527999 RepID=A0A5C5WKY8_9BACT)

HSP 1 Score: 102 bits (255), Expect = 7.120e-19
Identity = 60/176 (34.09%), Postives = 99/176 (56.25%), Query Frame = 3 
Query:  540 NADDCMVVIIEGEDLALTGAWSVVQDSAASGSKYIVWQGLTESDNNSSPDNGDIISTSIEIAIPGTYSFKWLMRQPAGVESDKANDTWLYFPDADRFGPKGKSSSYGTFIKVFGNAVGSDFKYSGTAEEANHSKSQIAVEFAEAGRYTMEISGRSHGHEIDQIILFGESLSVEDAS 1067
            N+ D  ++IIE ED+  T  W + +  AASG KY+V++G    +N+ +      I  + ++   G+YS KW MRQP  V  D+AND WL F DA +   + + + +  F+   G + GS F  +G  +     +  + VEF + G Y +EI+GRS G ++D+++L+ + +  ED S
Sbjct:  468 NSPDQALIIIEAEDMERTTGWRLAKGEAASGGKYVVYEG----NNSFARTTKHRIKATFKVEKAGSYSVKWSMRQPDDVPGDQANDAWLCFTDAKQLARQTQLTGFHKFV---GRSKGS-FGLNGQLD-LEGDQPWMTVEFPKPGEYQLEIAGRSQGFQLDRVVLY-QGIDFEDLS 633
[Close]
BLAST of mRNA_L-elsbetiae_contig8871.17896.1 vs. uniprot
Match: UPI001FF342BB (hypothetical protein n=1 Tax=Cellulophaga sp. F20128 TaxID=2926413 RepID=UPI001FF342BB)

HSP 1 Score: 101 bits (251), Expect = 2.080e-18
Identity = 63/171 (36.84%), Postives = 94/171 (54.97%), Query Frame = 3 
Query:  561 VIIEGEDLALTGAWSVVQDSAASGSKYIVWQGLTESDNNSSPDNGDIISTSIEIAIPGTYSFKWLMRQPAGVESDKANDTWLYFPDADRFGPKGKSSSYGTFIKVFGNAVGS---DFKYSGTAEEANHSKSQIAVEFAEAGRYTMEISGRSHGHEIDQIILFGESLSVEDA 1064
            + IEGE   L G W+   D  ASG KYI + G    +   +    +I  ++ E+  PGTY+ KWLMRQP   E DK+ND W+ FPDA + G +         IK F   VG    DF  +G  +  +  +  + V F ++G YT+++SGRS   +ID+I+L+ + +S E+A
Sbjct:  460 IAIEGEHFDLHGEWTFKNDDIASGGKYIQYTGANSYE---AVVEKNICESNFEVTEPGTYTVKWLMRQPEDAEGDKSNDAWINFPDAIQIGREP--------IKGFHKFVGRGKVDFAMNGQLD-LHGEQPWMKVTFEKSGFYTLQLSGRSELLQIDKIVLY-KDMSFEEA 617
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8871.17896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU28_ECTSI4.340e-12359.78EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LED7_ECTSI5.190e-8343.08EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JMV6_9PHAE3.720e-7047.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHF5_9PHAE2.510e-2543.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMS9_ECTSI7.300e-2544.44EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
UPI001CA333651.400e-2141.25hypothetical protein n=1 Tax=Seonamhaeicola marinu... [more]
UPI0002559DEE2.450e-1938.89Ig-like domain-containing protein n=1 Tax=Ochrovir... [more]
UPI00094FF4D05.130e-1936.26hypothetical protein n=1 Tax=Labilibacter marinus ... [more]
A0A5C5WKY8_9BACT7.120e-1934.09Uncharacterized protein n=1 Tax=Rubripirellula ama... [more]
UPI001FF342BB2.080e-1836.84hypothetical protein n=1 Tax=Cellulophaga sp. F201... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8871contigL-elsbetiae_contig8871:1131..6325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.4
Seed ortholog evalue5.6e-104
Seed eggNOG ortholog2880.D7FU28
KEGG koko:K01315
KEGG Pathwayko04080,ko04610,ko05150,ko05164,map04080,map04610,map05150,map05164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.4.21.7
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147,ko04516
Exons6
Model size2541
Cds size1041
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8871.17896.1prot_L-elsbetiae_contig8871.17896.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8871 1172..4866 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816964.4765415-UTR-L-elsbetiae_contig8871:1130..11711622816964.4765415-UTR-L-elsbetiae_contig8871:1130..1171Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8871 1131..1171 +
1691683946.1949267-UTR-L-elsbetiae_contig8871:1130..11711691683946.1949267-UTR-L-elsbetiae_contig8871:1130..1171Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8871 1131..1171 +
1622816964.5561087-UTR-L-elsbetiae_contig8871:4866..63251622816964.5561087-UTR-L-elsbetiae_contig8871:4866..6325Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8871 4867..6325 +
1691683946.286292-UTR-L-elsbetiae_contig8871:4866..63251691683946.286292-UTR-L-elsbetiae_contig8871:4866..6325Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8871 4867..6325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816964.4884508-CDS-L-elsbetiae_contig8871:1171..12911622816964.4884508-CDS-L-elsbetiae_contig8871:1171..1291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8871 1172..1291 +
1691683946.206388-CDS-L-elsbetiae_contig8871:1171..12911691683946.206388-CDS-L-elsbetiae_contig8871:1171..1291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8871 1172..1291 +
1622816964.4996822-CDS-L-elsbetiae_contig8871:1777..18701622816964.4996822-CDS-L-elsbetiae_contig8871:1777..1870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8871 1778..1870 +
1691683946.2234776-CDS-L-elsbetiae_contig8871:1777..18701691683946.2234776-CDS-L-elsbetiae_contig8871:1777..1870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8871 1778..1870 +
1622816964.5132892-CDS-L-elsbetiae_contig8871:2492..25791622816964.5132892-CDS-L-elsbetiae_contig8871:2492..2579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8871 2493..2579 +
1691683946.237849-CDS-L-elsbetiae_contig8871:2492..25791691683946.237849-CDS-L-elsbetiae_contig8871:2492..2579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8871 2493..2579 +
1622816964.5240536-CDS-L-elsbetiae_contig8871:3100..32171622816964.5240536-CDS-L-elsbetiae_contig8871:3100..3217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8871 3101..3217 +
1691683946.2484827-CDS-L-elsbetiae_contig8871:3100..32171691683946.2484827-CDS-L-elsbetiae_contig8871:3100..3217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8871 3101..3217 +
1622816964.5344098-CDS-L-elsbetiae_contig8871:3521..36011622816964.5344098-CDS-L-elsbetiae_contig8871:3521..3601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8871 3522..3601 +
1691683946.2609582-CDS-L-elsbetiae_contig8871:3521..36011691683946.2609582-CDS-L-elsbetiae_contig8871:3521..3601Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8871 3522..3601 +
1622816964.5459569-CDS-L-elsbetiae_contig8871:4322..48661622816964.5459569-CDS-L-elsbetiae_contig8871:4322..4866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8871 4323..4866 +
1691683946.277218-CDS-L-elsbetiae_contig8871:4322..48661691683946.277218-CDS-L-elsbetiae_contig8871:4322..4866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8871 4323..4866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8871.17896.1

>prot_L-elsbetiae_contig8871.17896.1 ID=prot_L-elsbetiae_contig8871.17896.1|Name=mRNA_L-elsbetiae_contig8871.17896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=347bp
MATQYGFECWCSPDGGLDYNRHYDVVGEDAVCDMDCMGDKAEICGGYDSF
SLYKLVPASGCSGTPVEAYEQCGGSDWTGSTCCSDGHECTDMVDSGCYSQ
CRPISTDETTPPPIDATGEPSPSPVSTEEPTPSPIAPEPVAPAPEPETPA
PVAPPVADPAPEPVPTNADDCMVVIIEGEDLALTGAWSVVQDSAASGSKY
IVWQGLTESDNNSSPDNGDIISTSIEIAIPGTYSFKWLMRQPAGVESDKA
NDTWLYFPDADRFGPKGKSSSYGTFIKVFGNAVGSDFKYSGTAEEANHSK
SQIAVEFAEAGRYTMEISGRSHGHEIDQIILFGESLSVEDASSGCE*
back to top

mRNA from alignment at L-elsbetiae_contig8871:1131..6325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8871.17896.1 ID=mRNA_L-elsbetiae_contig8871.17896.1|Name=mRNA_L-elsbetiae_contig8871.17896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5195bp|location=Sequence derived from alignment at L-elsbetiae_contig8871:1131..6325+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTGTGCCTGGAGTACTGCACGGATTTAGGCTCCGCCTTCATGGCCACC
CAGTACGGCTTCGAGTGCTGGTGTTCTCCCGACGGCGGCCTCGACTACAA
CCGCCACTACGACGTCGTCGGCGAGGACGCCGTGTGCGACATGGACTGCA
TGGGAGACAAGGTACGCATGATGGTTCTCGGCTGACAGGGGGTGGCTCTG
AGTCTTTGTTGTTGAGAGGGCGCAAACATATTTTTTGGCGCGATGGGGTT
TTGGCGACGGAAACTGCCTTTCCCAGACATCCTGCCGGCCCTTCAAATGC
TCTCCGGCAGGGGTGGGGTAGAGGGGTAGAGCGCTGAGTTAGACACAATT
GGTTGTACGCGATTGATTGGTCGACACTGATGGCTCCCGCATCCTGGTCG
CGTTGTTCCACTCGCGGTGTAGTTAAGTCGGGGGCCATCCCCACAGCCAT
CGACTGCTGTGGTGTTCCAAACCTAGACAATGCCCGGACACGCATAGAAA
TTCTTCGTGCGCGTTCATTTATTGTGGTGCGGAAGCCTGGCGTCATTATC
AAGGATTTTGCCGCCGGTTGTTGTAGAAGCAGGACATGCGCAAACGAGTT
GTCGAACGTAACCCCCTCCACTCTTCCTTCTCATCCCACCAACTCAGGCC
GAGATCTGCGGCGGGTACGACTCCTTCAGCCTCTACAAGCTCGTGCCGGC
ATCGGGATGTTCGGGGACTCCGGTCGAGGCCTACGAGCAGGTGCGTGCTT
TCTGGGTCACGAAGTGCGTGTCGCGAGTTTCCCGGCTTGAACTTAGCGGC
TTTAAGGGCGGGTCTCGTTGACTATCTACATGTAGCTCGGTTCACCGCGG
AGCACCGTAGTTTTTTTTTCTTGGCTGGCTGGGGTTCGACGTACGCCATC
CGTGCTTGATGTCCCTCTTTAGATCCCCACACTACCTACACCCACAGCAA
TTTTCGGCCCTGCATAAAGTAACCGTAGGTGACACAAGGCACCAACCCCC
CTGGACATATTTTCAAAGCCAGTGCCGAAATCGGGTGGCGTTGGAAATAT
CGTGTCGAGGGCTGTCCGAAAATATATGTGTCGTTTGGTGCTGGCATAAC
CCTCTTAGCTGTGGCGGAATCGGGCTTTGAGAATCTGAGAACCGGTCCCG
GGGGTGGGAGGGGGGGGGGGGCATCTAGTCGTATGCCGCGTATACATTTT
TCTCCAGCGCCAATTCTCAATCACAATACTCTTTCACCGGATAGTACATG
GACAGAAGGGTAAACAGGCGTCCTTAAGACGTAAAGTATATCTGGACAAG
GGGTTTGAAAACTGGCATCGCGTTTCCTCCGGCGCCCTCGCCCCTCTCGT
GGATTCTACCAGTGCGGCGGCTCGGATTGGACAGGATCGACGTGCTGCTC
TGACGGTCACGAGTGCACCGACATGGTGGACAGTGGCTGTTACTCGCAGG
TGGGGGGACATAGAGTTATGCATGTAGTTTCGAGGCTATGCTATGTAGAC
TAGCGAGAATATAAAAACACGGGCGGGAGGGAAGATGAAGAATAGAGTTT
ATCATTTTTACCTCGCATAGCGTGTAGAGGAGGGGAGCGAGGGGCTCTAC
ACTATTTGCCTTTGATTTGTATCGCTTTGCTGACCCTTCGGGCCCATTTT
TATTTTCGTATACCTTTTTTAGGTATTAGTTATCCTGCGACCACGGGAAT
TGACCGCATCAAGTGTTGGATTGTGCGGACATAGGGAGGTACTGGGTGGA
GAGATCGGAACGGGTTTTAATGTGAAGAAACAACAATGCATGTGGTTTCT
CGGCAGTTATGCATGTAGCGAGAGTGCATCATACATCGGTAGCAAGAATA
CAAAAACGGCGACAAATAAAACTCCGATTGACATCCCTGTCCCGAACACC
CACCACCCACCCTCAGCGTGTCTGACTCGTGATGTGTTTTGTGTTTCCCT
CCTGCCCACTATTCCTGAAGTGCCGCCCCATCAGCACCGACGAGACCACG
CCCCCCCCCATCGACGCCACGGGTGAGCCTTCTCCTTCACCTGTATCCAC
GGAGGAGCCCACCCCTTCTCCCATCGCCCCGGAGCCGGTAAGCCCCAAGG
CAGTAGATGCTAAATAATAATATACTCGGAGTTACCAATTTTCATGGCAC
CACAACAGCTCAGTACTCTGGCAAGATGTCCACATGACAAGGAGACAATC
GATCTCTGGAAATAAATGTGAAGACAGAAAAAAAAAACGGCGTAGAAGTA
GTACTAGATACTGCAGAAGAACACGTCATAATTTGCAGTCGGGACCCAGC
TTTTGGTGATGAGAGCAGAAGCTGGAACGGAACTGACTCGAACTGATTCC
ATGCTGTGCGCTTTTGATCCACCCGCCTTCTTGGTGCGCAGGTTGCCCCG
GCGCCCGAGCCCGAAACACCTGCGCCCGTGGCGCCTCCCGTCGCCGACCC
TGCCCCCGAGCCCGTGCCCACGTGAGTGACGTAACTCCTACCCACGTCAC
GCTCGCGCTGTGTGCTGCTATTATAGAAGTGCGTAGGCAACTCCCGTACA
ATAAGTTACGCGGCGTGTCTCGCGTTTCACGCACAGCCAGTCGCTGTTTG
TCGATAATGTGACAGCCAGTTATGCTGCCTGGTATGTATGTACATCATCT
CTAAATCTCAAGCCACGAGGTGGGCGGTGCGCTTGGCGGCAGGATATCTA
TTCCCTGCTCGCGATAAAAAGCATCACAGGCAGGCACCGCAGGAGAGGGT
CTAACACCCCCCTCCTGCGCGACCCCGGTCGGGTCGTCTAGCTAGTCTAT
GAGTGGAGGATGGGACCAGTGGGGTAGACGACGAATGAGCCAGTCATGGG
AGGAGCAAAAAACAAGTTTTCTCTGTGAATAGCAATTTATCGGTTTTTAT
GCCCACCATTCCACACTGCGTGCCCCCGCCCCCGTCGCTATTCCATTCAA
CGCGTAGTAGGTTACGCGTGCATGCGAGTTGACATATGGCACTCGGGTGC
TGGGATTGCTCGCATACGTAGAGGGTGCACCAGGATCAAAGCACCGATCC
GATGACTGCCATTTCACGCGGCGTGCCGAGCGAGTACACACGCACGCACG
CGCGGTCTCCTTTCGCCTCCCCTAGTGCACGCCCTCACTCCGTTCTGCTT
TCTGCTGCATCTCCTCTTCGCTGCATTTTTTGCGCCGATCAGTAACGCTG
ACGACTGCATGGTCGTCATCATTGAGGGCGAAGACCTTGCGCTGACAGGC
GCCTGGAGCGTCGTGCAGGACTCCGCCGCGAGCGGGAGCAAGTACATCGT
CTGGCAGGGCCTGACAGAGAGCGACAACAATAGCTCCCCGGACAACGGCG
ATATCATCTCCACAAGCATCGAGATCGCCATCCCGGGGACCTACTCCTTC
AAGTGGCTCATGCGCCAGCCTGCCGGCGTCGAGAGCGACAAGGCCAACGA
CACCTGGCTCTACTTCCCCGACGCTGACAGGTTCGGGCCCAAGGGAAAGA
GCTCCAGCTACGGCACCTTCATCAAGGTCTTCGGCAACGCCGTCGGGAGC
GACTTCAAGTACTCCGGCACCGCTGAGGAAGCCAACCACAGCAAGAGCCA
GATCGCGGTCGAGTTTGCTGAGGCGGGTCGGTACACCATGGAGATCTCGG
GCCGTTCTCACGGGCACGAGATCGACCAGATCATCCTCTTCGGAGAATCC
CTCTCCGTGGAAGACGCCTCCTCCGGCTGCGAATAAACTGAAACGACAAA
ACAGCTCCTCAGCGGAACACAAGCGCAAGTACGTGAGGCGTGCAGTACTG
TTTACATACACCCTGAGAGGGCATCTTTAGGACTACGCCATACGCGCCCT
CTGATTGGTCAAGCGTGTGTGCGGGACCACGTTCTGACCTGCGGACCATG
CGCCCCCCGAAAGCGGCGCAGCCGCGTTCGCGGCGATATCTCAGCCCCAC
GGCCCCGGCGGGGGCCTGGACGGGGGCTTTAGCTCCGCTCAAAATGCCGT
GGTAGCCATCACTAGTATTTAGGTAGTACTTTTAAGGGGGCGAGGGCGGG
CCTTGTGCTCTCTTGTGTACTATGTATACTACAAACCTACGAAAGGGTCA
GGGTTTGCCCAACCCTCGCCCTATGTGCTCTACTTATCGTGGTCTACGTT
GCCCCAGGGGGCGAGGGTTTGAGTGTCTGTCCTGGATTTCGCGTCAGTGA
GCTGAGTGGAGACGGTTGGACATGTGCTGTGTCTGCCTTTGCCATTTGCC
CGGGTCGGCTACATATTGTAGTGGAGTGAGGCAGGCGGGTGCACCCCTTC
CAAGAAGGAACACAAACTCGTGGTTTGGTCTCCTCTCTTTATTATTATCA
TTCCTTTTCCTTTTCCAAGTGGTGGGTGGGTAGTTCACGGCGAACTTATG
TGCGGCATTTGAACTGATTGCATTGTTTGTATTTCAGATTTGGCGTCATC
GTGAATAATGCATCCATCCACCGCGGACCACAACAACAGGTGACGACTCA
AGTTTAGGCGTTATTTGTGGATACATTGGGGGACACATCATCCGTCCGTG
CGCTGCGCCTTGTTGTATCTAGACTAGATCGTTTAAGTCTGTTGTCGTCG
ACCTCAATGATTTTCTTGGTAAACCTAGGTACTAAAAATCTAGTGCATTG
AAATAGTTCTTAGGAGTATGGTGAAAGCGTGGTACTGTAGCTGGCGTTTC
TCTCCCAGGTTTCTCTCTCTTGTGGTGCAAACCGTCACCAGCGACGTCCA
GTTTTGCTCGTTTTTATTTTTTGTTGTCTCGAAACCTTCTTGGTCCAATA
GTAACAGGTTTGGTTGCTTGTGTTGGCCCGCCGGAGAGAGAGGGTCTAGT
CAGTTAGGTAGGTGATTCCGTCGGTTTGTTTCTTTGTGTTGGCCCGCCGC
GAACCAAGGACAAAGGGGGTTTGGTCAATTAGTTAAGTGGTTCCGTGCCG
TTTTGTGGTGCTCCCTTGTGGTGCTTGGATGCATTGTGTTATCGTGCGTC
CGCAGTAACCTGTTCGTGGTGAAGCCTGGGTGACGTCAGCTATTTTACAT
TTAATTTGATGAATTTATATTTCGTGTTGTGGTAGTCCTCGGGAATGTTA
CCGTCGTGAAATTACAACCCTGGGGGACAGTCACGGTATTTTGGCGGTTT
ACCGCCAATTTTTGGTACAACTGTCTTCCGCCAAGAGATTACCGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8871:1131..6325+

>mRNA_L-elsbetiae_contig8871.17896.1 ID=mRNA_L-elsbetiae_contig8871.17896.1|Name=mRNA_L-elsbetiae_contig8871.17896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2082bp|location=Sequence derived from alignment at L-elsbetiae_contig8871:1131..6325+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCACCCAGTACGGCTTCGAGTGCTGGTGTTCTCCCGACGGCGGCCT
CGACTACAACCGCCACTACGACGTCGTCGGCGAGGACGCCGTGTGCGACA
TGGACTGCATGGGAGACAAGATGGCCACCCAGTACGGCTTCGAGTGCTGG
TGTTCTCCCGACGGCGGCCTCGACTACAACCGCCACTACGACGTCGTCGG
CGAGGACGCCGTGTGCGACATGGACTGCATGGGAGACAAGGCCGAGATCT
GCGGCGGGTACGACTCCTTCAGCCTCTACAAGCTCGTGCCGGCATCGGGA
TGTTCGGGGACTCCGGTCGAGGCCTACGAGCAGGCCGAGATCTGCGGCGG
GTACGACTCCTTCAGCCTCTACAAGCTCGTGCCGGCATCGGGATGTTCGG
GGACTCCGGTCGAGGCCTACGAGCAGTGCGGCGGCTCGGATTGGACAGGA
TCGACGTGCTGCTCTGACGGTCACGAGTGCACCGACATGGTGGACAGTGG
CTGTTACTCGCAGTGCGGCGGCTCGGATTGGACAGGATCGACGTGCTGCT
CTGACGGTCACGAGTGCACCGACATGGTGGACAGTGGCTGTTACTCGCAG
TGCCGCCCCATCAGCACCGACGAGACCACGCCCCCCCCCATCGACGCCAC
GGGTGAGCCTTCTCCTTCACCTGTATCCACGGAGGAGCCCACCCCTTCTC
CCATCGCCCCGGAGCCGTGCCGCCCCATCAGCACCGACGAGACCACGCCC
CCCCCCATCGACGCCACGGGTGAGCCTTCTCCTTCACCTGTATCCACGGA
GGAGCCCACCCCTTCTCCCATCGCCCCGGAGCCGGTTGCCCCGGCGCCCG
AGCCCGAAACACCTGCGCCCGTGGCGCCTCCCGTCGCCGACCCTGCCCCC
GAGCCCGTGCCCACGTTGCCCCGGCGCCCGAGCCCGAAACACCTGCGCCC
GTGGCGCCTCCCGTCGCCGACCCTGCCCCCGAGCCCGTGCCCACTAACGC
TGACGACTGCATGGTCGTCATCATTGAGGGCGAAGACCTTGCGCTGACAG
GCGCCTGGAGCGTCGTGCAGGACTCCGCCGCGAGCGGGAGCAAGTACATC
GTCTGGCAGGGCCTGACAGAGAGCGACAACAATAGCTCCCCGGACAACGG
CGATATCATCTCCACAAGCATCGAGATCGCCATCCCGGGGACCTACTCCT
TCAAGTGGCTCATGCGCCAGCCTGCCGGCGTCGAGAGCGACAAGGCCAAC
GACACCTGGCTCTACTTCCCCGACGCTGACAGGTTCGGGCCCAAGGGAAA
GAGCTCCAGCTACGGCACCTTCATCAAGGTCTTCGGCAACGCCGTCGGGA
GCGACTTCAAGTACTCCGGCACCGCTGAGGAAGCCAACCACAGCAAGAGC
CAGATCGCGGTCGAGTTTGCTGAGGCGGGTCGGTACACCATGGAGATCTC
GGGCCGTTCTCACGGGCACGAGATCGACCAGATCATCCTCTTCGGAGAAT
CCCTCTCCGTGGAAGACGCCTCCTCCGGCTGCGAATAATAACGCTGACGA
CTGCATGGTCGTCATCATTGAGGGCGAAGACCTTGCGCTGACAGGCGCCT
GGAGCGTCGTGCAGGACTCCGCCGCGAGCGGGAGCAAGTACATCGTCTGG
CAGGGCCTGACAGAGAGCGACAACAATAGCTCCCCGGACAACGGCGATAT
CATCTCCACAAGCATCGAGATCGCCATCCCGGGGACCTACTCCTTCAAGT
GGCTCATGCGCCAGCCTGCCGGCGTCGAGAGCGACAAGGCCAACGACACC
TGGCTCTACTTCCCCGACGCTGACAGGTTCGGGCCCAAGGGAAAGAGCTC
CAGCTACGGCACCTTCATCAAGGTCTTCGGCAACGCCGTCGGGAGCGACT
TCAAGTACTCCGGCACCGCTGAGGAAGCCAACCACAGCAAGAGCCAGATC
GCGGTCGAGTTTGCTGAGGCGGGTCGGTACACCATGGAGATCTCGGGCCG
TTCTCACGGGCACGAGATCGACCAGATCATCCTCTTCGGAGAATCCCTCT
CCGTGGAAGACGCCTCCTCCGGCTGCGAATAA
back to top