mRNA_L-elsbetiae_contig8866.17889.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8866.17889.1
Unique NamemRNA_L-elsbetiae_contig8866.17889.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8866.17889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8866contigL-elsbetiae_contig8866:6425..6943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size520
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816963.9379513-UTR-L-elsbetiae_contig8866:6424..65981622816963.9379513-UTR-L-elsbetiae_contig8866:6424..6598Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8866 6425..6598 +
1691683945.814629-UTR-L-elsbetiae_contig8866:6424..65981691683945.814629-UTR-L-elsbetiae_contig8866:6424..6598Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8866 6425..6598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816963.9483788-CDS-L-elsbetiae_contig8866:6598..69431622816963.9483788-CDS-L-elsbetiae_contig8866:6598..6943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8866 6599..6943 +
1691683945.8288991-CDS-L-elsbetiae_contig8866:6598..69431691683945.8288991-CDS-L-elsbetiae_contig8866:6598..6943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8866 6599..6943 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8866.17889.1prot_L-elsbetiae_contig8866.17889.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8866 6599..6943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8866.17889.1

>prot_L-elsbetiae_contig8866.17889.1 ID=prot_L-elsbetiae_contig8866.17889.1|Name=mRNA_L-elsbetiae_contig8866.17889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MDIDSRSATAATPTPCEDKRTGMKRPREDGMQGGESIADAPCQQGQQHEQ
RQGLQQPATSKDMSAGDTSGPACTTDNPKRRYLLPATPETTPAAGTAQAT
QSSPVTTISAAPSAR
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mRNA from alignment at L-elsbetiae_contig8866:6425..6943+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8866.17889.1 ID=mRNA_L-elsbetiae_contig8866.17889.1|Name=mRNA_L-elsbetiae_contig8866.17889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=519bp|location=Sequence derived from alignment at L-elsbetiae_contig8866:6425..6943+ (Laminarionema elsbetiae ELsaHSoW15)
CGTGGCACAGCTGCAGCTTGAGGGAGGAGGGCGCCTACGTACAAAATTTC
TGGAGTGACTCTGGCTCTGGTGGTATCTTTCCGCCACCTGTAGTGCGTGA
AAGTAGGCGAGAGGCGGCATCTGCTGTTGTGGCAAACAAACGTCAACTTG
GACGGCGTCCGCGGAGAGAGACACATGGACATCGACAGCAGGAGTGCGAC
CGCAGCCACGCCAACCCCTTGCGAAGATAAACGCACAGGGATGAAGAGAC
CCCGAGAGGATGGAATGCAGGGCGGAGAGAGTATTGCCGACGCCCCTTGC
CAACAAGGGCAACAGCACGAACAACGGCAGGGTCTCCAACAGCCAGCCAC
CTCGAAGGACATGTCCGCTGGTGATACATCCGGACCTGCCTGCACCACTG
ACAACCCGAAGCGGCGCTACCTCCTACCAGCCACACCCGAGACCACCCCG
GCAGCGGGCACAGCGCAAGCTACCCAATCGTCTCCTGTCACCACAATCTC
CGCAGCGCCGTCAGCGCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8866:6425..6943+

>mRNA_L-elsbetiae_contig8866.17889.1 ID=mRNA_L-elsbetiae_contig8866.17889.1|Name=mRNA_L-elsbetiae_contig8866.17889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig8866:6425..6943+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACATCGACAGCAGGAGTGCGACCGCAGCCACGCCAACCCCTTGCGA
AGATAAACGCACAGGGATGAAGAGACCCCGAGAGGATGGAATGCAGGGCG
GAGAGAGTATTGCCGACGCCCCTTGCCAACAAGGGCAACAGCACGAACAA
CGGCAGGGTCTCCAACAGCCAGCCACCTCGAAGGACATGTCCGCTGGTGA
TACATCCGGACCTGCCTGCACCACTGACAACCCGAAGCGGCGCTACCTCC
TACCAGCCACACCCGAGACCACCCCGGCAGCGGGCACAGCGCAAGCTACC
CAATCGTCTCCTGTCACCACAATCTCCGCAGCGCCGTCAGCGCGAATGGA
CATCGACAGCAGGAGTGCGACCGCAGCCACGCCAACCCCTTGCGAAGATA
AACGCACAGGGATGAAGAGACCCCGAGAGGATGGAATGCAGGGCGGAGAG
AGTATTGCCGACGCCCCTTGCCAACAAGGGCAACAGCACGAACAACGGCA
GGGTCTCCAACAGCCAGCCACCTCGAAGGACATGTCCGCTGGTGATACAT
CCGGACCTGCCTGCACCACTGACAACCCGAAGCGGCGCTACCTCCTACCA
GCCACACCCGAGACCACCCCGGCAGCGGGCACAGCGCAAGCTACCCAATC
GTCTCCTGTCACCACAATCTCCGCAGCGCCGTCAGCGCGA
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