mRNA_L-elsbetiae_contig8866.17888.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8866.17888.1
Unique NamemRNA_L-elsbetiae_contig8866.17888.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8866.17888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8866contigL-elsbetiae_contig8866:3424..3891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size468
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816963.891198-UTR-L-elsbetiae_contig8866:3423..35731622816963.891198-UTR-L-elsbetiae_contig8866:3423..3573Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8866 3424..3573 +
1691683945.7762501-UTR-L-elsbetiae_contig8866:3423..35731691683945.7762501-UTR-L-elsbetiae_contig8866:3423..3573Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8866 3424..3573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816963.9033148-CDS-L-elsbetiae_contig8866:3573..38911622816963.9033148-CDS-L-elsbetiae_contig8866:3573..3891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8866 3574..3891 +
1691683945.7961771-CDS-L-elsbetiae_contig8866:3573..38911691683945.7961771-CDS-L-elsbetiae_contig8866:3573..3891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8866 3574..3891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8866.17888.1prot_L-elsbetiae_contig8866.17888.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8866 3574..3891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8866.17888.1

>prot_L-elsbetiae_contig8866.17888.1 ID=prot_L-elsbetiae_contig8866.17888.1|Name=mRNA_L-elsbetiae_contig8866.17888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MLRAGGGRSRTRARCARPRCGLTVPLSLLLLLFHLLLLILLLLLLLLTLL
REGVPDAWSRLPPPLPPPERLARQQRLVRQQRRLMPFQPAAARSAQRGPS
SGWPSE
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mRNA from alignment at L-elsbetiae_contig8866:3424..3891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8866.17888.1 ID=mRNA_L-elsbetiae_contig8866.17888.1|Name=mRNA_L-elsbetiae_contig8866.17888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig8866:3424..3891+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGTCTGGTCCAACCTCCTGCGGCGCCCCTGTCATCACCACCCCCGATT
TTTCTTCCCCCTGCGGCGCCCCTCGAGCTGAGGGGGCTGCTGTTGGAGAA
GTGACCGCGCCTCCTCCCGGTGCCCCCCCTTCTTCTCGAGGGCGGCCAAG
ATGTTGCGGGCAGGAGGAGGGCGAAGCCGAACGCGGGCGAGGTGCGCGCG
GCCGCGCTGCGGGTTGACAGTCCCGTTGTCGTTGCTGTTGTTGCTGTTCC
ACCTCCTGCTACTGATACTGCTGCTGCTGCTGCTGCTGCTGACACTGCTG
CGAGAGGGTGTACCCGATGCTTGGTCGCGGCTCCCGCCGCCACTCCCGCC
GCCGGAGCGGTTGGCACGGCAGCAGCGGTTGGTACGGCAGCAGCGGCGGT
TGATGCCGTTCCAACCAGCAGCAGCGCGGTCAGCGCAGCGAGGGCCGTCA
TCAGGGTGGCCGTCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8866:3424..3891+

>mRNA_L-elsbetiae_contig8866.17888.1 ID=mRNA_L-elsbetiae_contig8866.17888.1|Name=mRNA_L-elsbetiae_contig8866.17888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig8866:3424..3891+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCGGGCAGGAGGAGGGCGAAGCCGAACGCGGGCGAGGTGCGCGCG
GCCGCGCTGCGGGTTGACAGTCCCGTTGTCGTTGCTGTTGTTGCTGTTCC
ACCTCCTGCTACTGATACTGCTGCTGCTGCTGCTGCTGCTGACACTGCTG
CGAGAGGGTGTACCCGATGCTTGGTCGCGGCTCCCGCCGCCACTCCCGCC
GCCGGAGCGGTTGGCACGGCAGCAGCGGTTGGTACGGCAGCAGCGGCGGT
TGATGCCGTTCCAACCAGCAGCAGCGCGGTCAGCGCAGCGAGGGCCGTCA
TCAGGGTGGCCGTCGGAGATGTTGCGGGCAGGAGGAGGGCGAAGCCGAAC
GCGGGCGAGGTGCGCGCGGCCGCGCTGCGGGTTGACAGTCCCGTTGTCGT
TGCTGTTGTTGCTGTTCCACCTCCTGCTACTGATACTGCTGCTGCTGCTG
CTGCTGCTGACACTGCTGCGAGAGGGTGTACCCGATGCTTGGTCGCGGCT
CCCGCCGCCACTCCCGCCGCCGGAGCGGTTGGCACGGCAGCAGCGGTTGG
TACGGCAGCAGCGGCGGTTGATGCCGTTCCAACCAGCAGCAGCGCGGTCA
GCGCAGCGAGGGCCGTCATCAGGGTGGCCGTCGGAG
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