mRNA_L-elsbetiae_contig8861.17884.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8861.17884.1
Unique NamemRNA_L-elsbetiae_contig8861.17884.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8861.17884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8861contigL-elsbetiae_contig8861:1311..6412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-26_000940.1
Exons2
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816963.6103399-CDS-L-elsbetiae_contig8861:1310..15711622816963.6103399-CDS-L-elsbetiae_contig8861:1310..1571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8861 1311..1571 +
1691683945.5729277-CDS-L-elsbetiae_contig8861:1310..15711691683945.5729277-CDS-L-elsbetiae_contig8861:1310..1571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8861 1311..1571 +
1622816963.6218522-CDS-L-elsbetiae_contig8861:6329..64101622816963.6218522-CDS-L-elsbetiae_contig8861:6329..6410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8861 6330..6410 +
1691683945.585479-CDS-L-elsbetiae_contig8861:6329..64101691683945.585479-CDS-L-elsbetiae_contig8861:6329..6410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8861 6330..6410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8861.17884.1prot_L-elsbetiae_contig8861.17884.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8861 1311..6410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8861.17884.1

>prot_L-elsbetiae_contig8861.17884.1 ID=prot_L-elsbetiae_contig8861.17884.1|Name=mRNA_L-elsbetiae_contig8861.17884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
GGFPWRPGQPAIPRGGQSPASLALNRQARPVNVRSAPVRGAPAQAVRGNG
GDRSMLLSRGDSSATGARTDSRSPVHGARDERRARLALSPSASRLGQDRI
IAGSKWQTDRQMPC
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mRNA from alignment at L-elsbetiae_contig8861:1311..6412+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8861.17884.1 ID=mRNA_L-elsbetiae_contig8861.17884.1|Name=mRNA_L-elsbetiae_contig8861.17884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5102bp|location=Sequence derived from alignment at L-elsbetiae_contig8861:1311..6412+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGGCTTTCCATGGCGCCCAGGTCAGCCCGCGATCCCTCGAGGCGGCCA
AAGCCCTGCTTCACTAGCGCTAAATCGACAGGCACGGCCGGTCAACGTGC
GGTCGGCACCGGTGCGGGGCGCACCAGCTCAGGCAGTTCGAGGGAACGGA
GGTGATCGCTCTATGTTGCTATCAAGGGGCGATTCAAGTGCTACTGGTGC
TCGTACAGACTCTAGGTCGCCCGTGCATGGTGCGAGGGACGAGAGAAGGG
CTCGCCTAGCGGTGAGATGGTAAACTCGTGTCTAAGAACATCTATGTATG
TTGACAACTTGATCTACTAGATAGTGTATCTAGATACACAGACAAGCTCG
TTTGACACCAGCGGTATCTAGAGTATCTAGATTGTAGTCTAGATATGAAG
ACAGTAGGTTTCCTCCTGCTGTTGATTTTCCTTCAGTGATGATTATTGGC
ATTGCAAGGTACACTTGAATTTAGGAGTAGTATCATAGTAACAAGAACTT
CATCGACGGGTTTGAACATGGAGAGGCCGAGAGATGTCCCCAGACCTTGT
TTGTGTACGAAGTGGGTGCTGTATCTTAAATACAGTACATTAATTACAAT
CCAACCCCAGATGGTCTGTAGACTACAGGTGTGTTCTATCTATATCTAGT
AGGAATTATTTTCGCGCGCATAGCGCGCGAAAAACCCCCCATAACGATAG
TGGAGCTTTAAAAAAAAAGAAGCTGTCTAGATGGATGAGTTTGGTTCCTG
TGCGTGTGGTACGTTAAATAACACCCCCTGCTGCTGCGACCCATGAATTA
AAAGCTGTTCTTAATTCACTGTGTGTCCGTCCGTGGGTTTTATTTTGCTC
ATCTTTTGACCGATTTAGAAGCCATTTCGCGACCGATTGGAGTATGGAAA
AGTGCCCAACCTCAGGCTAAATAGGCACAAACCTCTGGCGCCGGCCGTTT
CCCAAACCAAGGCCTAGTTCCGTTGTTGACACGCCATATGTCCTCTAAAA
ATCACAGCCTTCAGTAGAGATGGCTCCCGGTTCTGAAAATTGGAACCGGG
TTCCCGGTGGGGTCTCGGTAGTTGGAACCGGGTACCCGGGTACCCGAGTC
CCGGACGGGTACCCGGATGGTACCCGGGTACATACCCGGGTACCCGTACC
TACAGCGTCTATTTTCTAGCCTGGATGAGGCTCAACAGCCCGAGAGCGGC
GTCGTAAGTACTCGAAAGGGGTATCATAGGGGAAGGTGGCTTACCTATGT
TGTCTTTGAATCATGTGCTACATATGTATATAGGCACAAGCAGGTTTCGG
TGCTACGGGCCGACGCAGCAGTAGCAGCAGGCACCTCCAGAACTGATAGT
ATTCCATTTCCTCCATTATGTCGGGTGATGTACTACTTGTACGGTGTACG
GAGTAGCTCCCGCATCTCCTGTTCATTTCTGGGTTGTTTTTGCCCGCCAG
AGGGGAGATTTATTTGTACGCGGTGTGCACGGCAGGTAGAGACACGGCAA
GTGCTACACCGAAGGCGTTATTAGAGTGTCTGCGATATGGCCTTTTCGCT
TACAAATTTGGTAGAGCAGTGGTCTCTGTCATTTCGGCGCATAAGGGAAT
TTTATTTGGAAAAGGAAGTGTCTGCGCGACGAAAAGTCTGGATGGGAGTG
GGGGGGATTGGGCGGAAAGGGCGGGAAGGGTTCCTGTCGAACCCCCCGGA
AAAACTCGGCGGTGTGAGACGGCACTGTTGTGAGATGTTTTGCGCGCGAA
AAAGCAGCTACCCATCACCAGGAGATCCTCCTGGGGGACGGGCGTGGAGG
TCACCGCGTTTGCTGGCCCTCGATGTTCGTTCTCACACTCCAAGTCCCGA
ACACCGCGGCATGTTCCTGGCAGATTCCTCAGATAGTTAGCCCGAACACA
CGCTTTCAATATTTGCTATGTTCGCAAATTTAGCATGAATTGAGCTCCTG
TTTTGGCAAATTTGGTTCATTTTTGCTTCGGGGTAACCTACACTAAGAAA
ATTCATAAGCACATTTGGGCTTCGCAGACACTCTATTGCTGTAATTTAAA
TTCCGGGGCGCTGTGTATCGAAACATGTGGGGTACCCTTAACTTCCAATA
CCCGGGTACTGGAAAGTGTTCCCGGAACCGGACGGGTACTGGAATACCCG
GGTGCCCGTCACGGGTACCCGGGTATTTCCCCCACGGGAGCCATCTCTAG
CCTTCAGCTACCCTGTTGGACACCCAGCAGCTGGCATCATCTACGATGTA
TAGGTATATACGCACACAACAGACTATGGAAGCCCACAGCAGCAGCAGCA
GTGCAGCAATAGTTTCTCCTGTAGGGAGCACCCCTCTCTGCGCAGCTGAG
GTTATACAGCTGGGCCTGGTTGGTGGGGTATGTATGTATGTTGTCGAGAA
GACAAGCAACACAGCGGCGGAAAAAAACAATTTTTCGGTCTCACGTTCAC
AGTCATGCCCAATTTCCCACTCATCGTAGGAGGTAACCGCACAGCTTCTC
CTACACAACTCGCGGATGCACCTATCTATATATCACAAAAAGCGGCCGCG
TCAGGTTCTGCGGCGGCGAGGGAGCACGTTTCCGCAGTGCTTTGAATCGG
CGACAGGCCGACTTCAAATGTTTGGGCGTGTTTGCAGTCTGGGATATTGC
TTCGGTCGCAGCTGTCGACCACTCCTATCGAGGTTGGCACGGCTTTTCAC
TGCCACCTAGAAGACAGGTCTATACATCTTTGTCGTACAACCAGCAGTAT
CGGGAGCGATTTGTGGAGGTCTAGCGTGACTGTGCGTGGTGTTCTACTGG
TGCTGGTGTTTTCCGAGACACGCGCGCAAGCAAAAAAAAAGAGGGGGGCT
CGCAGCGAGAAGAGCTGGGGTGTGTACCAATTTTGTTTTTGGATGTATCA
CGGGGGGGGAGTCCCTTTCGCACGATCCAGCCTACTGCAGGGAGATGATA
AAAACACATACGTGTGTGTCATTTATTTGACACATAGGGGATGGTAAGCT
GCCATCCCCGGGGTTTCAAAACAGAATTACGGTTCTATTGTAGGTAATCT
GCGCGCAACATGACAGAGGTAGGGTTGCGTGCACTAAGCGCACTACAGGC
ACCTAATCGACGCAAAAGACAACGAATCGCGAAGTTAGTGACTCTACATC
AGATTTTATGTGTGGAGGTTGCAACACCATATCTTGTCGTCTAATAGACT
AGTAAGATAGATCCTAGTGCTGTGTGTCCTGTTGTCTAAGTCGGGCCGAT
ATCTCGCCGATTTTAGGGTCTCGTGGGGCAAAACTTGGATTTTGTAGGCA
AAGAAGGTTCGCGATTCGTTGTCTTTTGCGTCGATTAGGTGCCTGTAGTG
CGCTTAGTGCACGCAACCCTACCTCTGTCATTTTGCGCGCAGATTACCTG
AAACCCCGGGGATGGCAGCTTACCATCCCCTATGTGTCAAATAAATGACA
CACACGTATGTGTTTTTATCATCTCCCGCCTACTGCAGGTATTTTTGCAT
CACGGTTTGCTGTTGTGATGATGCGAAAAAAACTCCCCAGCTTAGGGTCT
AGTATATACCTAGACTATATATGTACTTCTAGTACAGTAGCATATCTATC
TACAGCAGTATCTAGATTATGTAGTCTAGATATGTATGTACATCGTTATC
CTATCCTAGTCTAGATCGTACGAAATTGTTTTTTCAACTTCGCTGCAGTT
ACACTGCTTTGTGACTTCATACAGTCTAAACGTCCTGAAGTACTGCTGGC
GAACTACGTAAACTTTCGGGAGAAAACAGCCGACCAAGCATACAAGAAGA
TAACAAATCCATATACTCATCGGTTCTATATCGTCGCACCTACATATGAT
CGATGTGTGCTGGTGTTGCGACGGCACCGCTACAATACTGCGACGGTGCT
TGTTCGTGCTTGCTGTTTACATTGGCACTGCCGCTTTTCAAAACTTGAGC
ACGAACGAAAAACTGTGGTTGGCACCCAAACAACGATTAAAACAAATTTG
ATACCAGGCTCGAGGCCTTTTTTCTTTTTTCAGTAATGACCCTTATTTGT
GTGTGTGTGCGGCTTGCCGCATGCGTATTGTTTTTTCTCGCGTGTGTACC
AGCCAGTCCTGGGAAAAAACTCAGTATGCTAAAGGCTGTTGATGGCATTG
GTTGTGCGATGGTAGCTCCCGAGAGACACCCCACTGGTACACTCCAGTGC
AGCACCCACAAGCACTCTAAGCTGACATCCCCATCAAATGAGTGAGCGCT
TAGATAGGTGCATGTATACGAGGCAAATGCCGACCTTTTTCTTTTTCTCG
GAATCGCTGGATCTGCTCTGGCCTCTTTTTATTGCTTTACCTCAAGCCCG
GAGGCAGAGAGAAAGAGAAACCAACCGGTCAGAGCACCTTCCAGCAATCA
CCTTCTGCGCCGGTGCTAACGTGGCAGAAGGGTGGATGGGCGGGAAAAGA
CGCAAACTCTCGTCGACCCTTTCGATTTCTGGCCAACCCATGAGTTTATT
TTTCTCTGTCCACCTTTCTGCACAGCTCTTACCCACGTATCTACATAGCG
TGTCTTAGCCTTATTACTATGTGGACACTTCCCCGCGAGTGAGCAGTCGC
TCAAAGTTATTTCCTCCCGGACCCCAATACACAGGTACAAGTGTTACGAT
TCGGACCAGCTCTAGGCGGCGTAAATATAACGCGATGGTCAAGCGATGGT
TTTTGTTTTCTTCGTCTGAACAAACCCGCCTTTATTTATCTTTCTCGGAA
TCGCTCGATCTGCTGCGAGTGCCTCTTTTCTGGCAACCCTGTGTGCGCTC
TTCAATCATGAACCCTTGCTTTTCATGCCAACGTTTACTGTAGAGCAGCC
TGTTACAACGCAGGGGTTCGGAAGCCCGACAAAGGTACAAAAGCGCACAA
TGTATGTCATGCGTGGTACTGGGTTTTTGAGGCCTCTCGTCGAAGGGGCT
ACATAATAGTTCGCAAGCATCTAACGCCCTCTTCTCCCCTCCCCCCCATG
CGGCCGATTCTCTGTCCAGCTTTCACCTAGTGCGAGCCGACTCGGTCAGG
ATAGGATAATTGCGGGAAGCAAATGGCAGACAGATAGGCAGATGCCTTGT
CC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8861:1311..6412+

>mRNA_L-elsbetiae_contig8861.17884.1 ID=mRNA_L-elsbetiae_contig8861.17884.1|Name=mRNA_L-elsbetiae_contig8861.17884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig8861:1311..6412+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGGCTTTCCATGGCGCCCAGGTCAGCCCGCGATCCCTCGAGGCGGCCA
AAGCCCTGCTTCACTAGCGCTAAATCGACAGGCACGGCCGGTCAACGTGC
GGTCGGCACCGGTGCGGGGCGCACCAGCTCAGGCAGTTCGAGGGAACGGA
GGTGATCGCTCTATGTTGCTATCAAGGGGCGATTCAAGTGCTACTGGTGC
TCGTACAGACTCTAGGTCGCCCGTGCATGGTGCGAGGGACGAGAGAAGGG
CTCGCCTAGCGGGAGGCTTTCCATGGCGCCCAGGTCAGCCCGCGATCCCT
CGAGGCGGCCAAAGCCCTGCTTCACTAGCGCTAAATCGACAGGCACGGCC
GGTCAACGTGCGGTCGGCACCGGTGCGGGGCGCACCAGCTCAGGCAGTTC
GAGGGAACGGAGGTGATCGCTCTATGTTGCTATCAAGGGGCGATTCAAGT
GCTACTGGTGCTCGTACAGACTCTAGGTCGCCCGTGCATGGTGCGAGGGA
CGAGAGAAGGGCTCGCCTAGCGCTTTCACCTAGTGCGAGCCGACTCGGTC
AGGATAGGATAATTGCGGGAAGCAAATGGCAGACAGATAGGCAGATGCCT
TGTCTTTCACCTAGTGCGAGCCGACTCGGTCAGGATAGGATAATTGCGGG
AAGCAAATGGCAGACAGATAGGCAGATGCCTTGT
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