mRNA_L-elsbetiae_contig8860.17881.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8860.17881.1
Unique NamemRNA_L-elsbetiae_contig8860.17881.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8860.17881.1 vs. uniprot
Match: D8LD53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD53_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.860e-20
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 WVQCDTCKKWRRLPDFVDPEKLPAKWHCEMNSYDLSRADCR 123
            WVQCDTCKKWRRLPDFVDP++LP KWHCEMN YD +RA+CR
Sbjct:   68 WVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDAARANCR 108
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BLAST of mRNA_L-elsbetiae_contig8860.17881.1 vs. uniprot
Match: A0A6H5K0G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.480e-20
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 WVQCDTCKKWRRLPDFVDPEKLPAKWHCEMNSYDLSRADCR 123
            WVQCDTCKKWRRLPDFVDP++LP KWHCEMN YD++RA+CR
Sbjct:  254 WVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDVARANCR 294
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BLAST of mRNA_L-elsbetiae_contig8860.17881.1 vs. uniprot
Match: A0A7S1GRD9_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GRD9_CYCTE)

HSP 1 Score: 65.1 bits (157), Expect = 6.100e-12
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 WVQCDTCKKWRRLPDFVDPEKLPAKWHCEMNSYDLSRADC 120
            WV+CD CKKWRRL   VD +KLP+KW+C MN  D  RA C
Sbjct:   97 WVECDKCKKWRRLRGVVDEKKLPSKWYCSMNKNDPDRARC 136
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BLAST of mRNA_L-elsbetiae_contig8860.17881.1 vs. uniprot
Match: A0A7S2DNR0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNR0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 9.810e-12
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 WVQCDTCKKWRRLPDFVDPEKLPAKWHCEMNSYDLSRADCRFV 129
            WVQCD+C KWR++PD VD  +LP KW C MN++D S A C  V
Sbjct:    9 WVQCDSCSKWRKIPDSVDASRLPDKWFCRMNTWDPSHARCDAV 51
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BLAST of mRNA_L-elsbetiae_contig8860.17881.1 vs. uniprot
Match: A0A7S0CAQ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAQ7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.610e-11
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 WVQCDTCKKWRRLPDFVDPEKLPAKWHCEMNSYDLSRADC 120
            WV+CD CKKWRRL   VD +KLP+KW+C MN  D  RA C
Sbjct:  154 WVECDKCKKWRRLRGSVDAKKLPSKWYCSMNKNDPERAKC 193
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BLAST of mRNA_L-elsbetiae_contig8860.17881.1 vs. uniprot
Match: A0A7S1ZHQ6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZHQ6_TRICV)

HSP 1 Score: 65.5 bits (158), Expect = 3.420e-11
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 WVQCDTCKKWRRLPDFVDPEKLPAKWHCEMNSYDLSRADC 120
            WV+CD CKKWRRL   VD +KLP+KW+C MN  D  RA C
Sbjct:  324 WVECDKCKKWRRLRGVVDAKKLPSKWYCHMNKNDPERAKC 363
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BLAST of mRNA_L-elsbetiae_contig8860.17881.1 vs. uniprot
Match: A0A7S4MKU7_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MKU7_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.430e-11
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 WVQCDTCKKWRRLPDFVDPEKLPAKWHCEMNSYDLSRADC 120
            WV+CD CKKWRRL   VD +KLP+KW+C MN  D  RA C
Sbjct:  370 WVECDKCKKWRRLRGVVDAKKLPSKWYCHMNKNDPDRAKC 409
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BLAST of mRNA_L-elsbetiae_contig8860.17881.1 vs. uniprot
Match: A0A7S4WDR2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WDR2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.430e-11
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 WVQCDTCKKWRRLPDFVDPEKLPAKWHCEMNSYDLSRADC 120
            WV+CD CKKWRRL   VD +KLP+KW+C MN  D  RA C
Sbjct:  564 WVECDKCKKWRRLRGVVDAKKLPSKWYCSMNKNDPDRAKC 603
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BLAST of mRNA_L-elsbetiae_contig8860.17881.1 vs. uniprot
Match: A0A7S4AFB3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AFB3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.430e-11
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 WVQCDTCKKWRRLPDFVDPEKLPAKWHCEMNSYDLSRADCR 123
            WVQCD+CKKWR LPD V    LP +W+C MN YD  R++C+
Sbjct:  663 WVQCDSCKKWRVLPDTVKVSSLPEQWYCHMNIYDKKRSNCQ 703
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BLAST of mRNA_L-elsbetiae_contig8860.17881.1 vs. uniprot
Match: A0A835ZFF5_9STRA (CW-type zinc finger-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.080e-11
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 WVQCD--TCKKWRRLPDFVDPEKLPAKWHCEMNSYDLSRADC 120
            WVQCD  +CKKWR+LP  VDPE LP KW+C MN++   RA C
Sbjct:  216 WVQCDRRSCKKWRKLPPGVDPESLPEKWYCSMNTWAPERASC 257
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8860.17881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD53_ECTSI3.860e-2082.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0G2_9PHAE4.480e-2082.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1GRD9_CYCTE6.100e-1262.50Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S2DNR0_9STRA9.810e-1258.14Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S0CAQ7_9STRA1.610e-1162.50Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S1ZHQ6_TRICV3.420e-1162.50Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4MKU7_9STRA3.430e-1162.50Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S4WDR2_9STRA3.430e-1162.50Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4AFB3_9STRA3.430e-1158.54Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A835ZFF5_9STRA4.080e-1161.90CW-type zinc finger-domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8860contigL-elsbetiae_contig8860:348..491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue1.8e-16
Seed eggNOG ortholog2880.D8LD53
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043565,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.CW-type Zinc Finger
EggNOG OGs2E11X@1,2S8EJ@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionCW-type zinc finger protein
Ec32 orthologEc-11_000500.1
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816963.4927413-CDS-L-elsbetiae_contig8860:347..4911622816963.4927413-CDS-L-elsbetiae_contig8860:347..491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8860 348..491 -
1691683945.4951699-CDS-L-elsbetiae_contig8860:347..4911691683945.4951699-CDS-L-elsbetiae_contig8860:347..491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8860 348..491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8860.17881.1prot_L-elsbetiae_contig8860.17881.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8860 348..491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8860.17881.1

>prot_L-elsbetiae_contig8860.17881.1 ID=prot_L-elsbetiae_contig8860.17881.1|Name=mRNA_L-elsbetiae_contig8860.17881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=48bp
WVQCDTCKKWRRLPDFVDPEKLPAKWHCEMNSYDLSRADCRFVCCCC*
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mRNA from alignment at L-elsbetiae_contig8860:348..491-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8860.17881.1 ID=mRNA_L-elsbetiae_contig8860.17881.1|Name=mRNA_L-elsbetiae_contig8860.17881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=144bp|location=Sequence derived from alignment at L-elsbetiae_contig8860:348..491- (Laminarionema elsbetiae ELsaHSoW15)
TGGGTGCAGTGCGACACGTGCAAGAAGTGGCGCAGGCTCCCGGACTTCGT
GGACCCGGAAAAGCTGCCCGCCAAGTGGCATTGCGAGATGAACAGCTACG
ACCTGTCTAGGGCGGACTGCAGGTTCGTGTGTTGTTGTTGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8860:348..491-

>mRNA_L-elsbetiae_contig8860.17881.1 ID=mRNA_L-elsbetiae_contig8860.17881.1|Name=mRNA_L-elsbetiae_contig8860.17881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=288bp|location=Sequence derived from alignment at L-elsbetiae_contig8860:348..491- (Laminarionema elsbetiae ELsaHSoW15)
TGGGTGCAGTGCGACACGTGCAAGAAGTGGCGCAGGCTCCCGGACTTCGT
GGACCCGGAAAAGCTGCCCGCCAAGTGGCATTGCGAGATGAACAGCTACG
ACCTGTCTAGGGCGGACTGCAGGTTCGTGTGTTGTTGTTGTTGATGGGTG
CAGTGCGACACGTGCAAGAAGTGGCGCAGGCTCCCGGACTTCGTGGACCC
GGAAAAGCTGCCCGCCAAGTGGCATTGCGAGATGAACAGCTACGACCTGT
CTAGGGCGGACTGCAGGTTCGTGTGTTGTTGTTGTTGA
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