mRNA_L-elsbetiae_contig8841.17868.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8841.17868.1
Unique NamemRNA_L-elsbetiae_contig8841.17868.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8841.17868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8841contigL-elsbetiae_contig8841:6745..7386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size642
Cds size405
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816962.2922866-UTR-L-elsbetiae_contig8841:6744..69811622816962.2922866-UTR-L-elsbetiae_contig8841:6744..6981Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8841 6745..6981 +
1691683944.5182312-UTR-L-elsbetiae_contig8841:6744..69811691683944.5182312-UTR-L-elsbetiae_contig8841:6744..6981Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8841 6745..6981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816962.307264-CDS-L-elsbetiae_contig8841:6981..73861622816962.307264-CDS-L-elsbetiae_contig8841:6981..7386Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8841 6982..7386 +
1691683944.5323722-CDS-L-elsbetiae_contig8841:6981..73861691683944.5323722-CDS-L-elsbetiae_contig8841:6981..7386Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8841 6982..7386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8841.17868.1prot_L-elsbetiae_contig8841.17868.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8841 6982..7386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8841.17868.1

>prot_L-elsbetiae_contig8841.17868.1 ID=prot_L-elsbetiae_contig8841.17868.1|Name=mRNA_L-elsbetiae_contig8841.17868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MHHTTLDHRLSSAPLMAAMTTKMSTLYQLTATSPSALAEHTILSSSSSLS
ASGSPVPGGKLPAADFSSRCFTSSKALWFSLVSPSSSAKEATCTRNASSA
FPPSDEEGRPAGGAFVSPGCSPRVGELRRPRASSF
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mRNA from alignment at L-elsbetiae_contig8841:6745..7386+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8841.17868.1 ID=mRNA_L-elsbetiae_contig8841.17868.1|Name=mRNA_L-elsbetiae_contig8841.17868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig8841:6745..7386+ (Laminarionema elsbetiae ELsaHSoW15)
CTGACGGCGACGTAGTATACTCTGCAACCCGGACGGAAGGCCAGCTCCTT
CCTCTGCATCTCCTTGTCTTCCATGTGTCGCGACTGCGCAGTCGTATGAC
GTAGCGTGATTCACGTCAATTCGAGTTTCCACATGTACAATAGGGGACGC
AACTATACGCGATCAACACGGATTTGAAAAATACCAGGAAATACTGCGAG
CAGTCACAGATACGCATAATGTTGTGAACGGTGCACAATGCACCATACAA
CACTCGACCACCGACTGAGCTCAGCTCCTCTCATGGCTGCCATGACCACA
AAGATGTCTACGTTGTACCAGCTCACCGCCACCTCGCCCAGCGCCTTGGC
CGAACACACCATCCTGTCGAGCTCCAGCAGCTTGTCCGCATCGGGGAGCC
CAGTGCCGGGAGGAAAGCTACCGGCGGCCGATTTTTCGAGTAGATGTTTC
ACCTCTTCCAAAGCTTTGTGGTTTTCTCTGGTAAGCCCGTCTAGCTCTGC
AAAGGAAGCAACTTGCACCCGAAATGCGTCTTCCGCATTTCCCCCCTCCG
ACGAAGAAGGGCGTCCAGCGGGAGGGGCGTTTGTCTCGCCGGGCTGCTCG
CCTCGAGTTGGGGAGCTGCGCCGTCCGAGAGCTTCCTCCTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8841:6745..7386+

>mRNA_L-elsbetiae_contig8841.17868.1 ID=mRNA_L-elsbetiae_contig8841.17868.1|Name=mRNA_L-elsbetiae_contig8841.17868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig8841:6745..7386+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACCATACAACACTCGACCACCGACTGAGCTCAGCTCCTCTCATGGC
TGCCATGACCACAAAGATGTCTACGTTGTACCAGCTCACCGCCACCTCGC
CCAGCGCCTTGGCCGAACACACCATCCTGTCGAGCTCCAGCAGCTTGTCC
GCATCGGGGAGCCCAGTGCCGGGAGGAAAGCTACCGGCGGCCGATTTTTC
GAGTAGATGTTTCACCTCTTCCAAAGCTTTGTGGTTTTCTCTGGTAAGCC
CGTCTAGCTCTGCAAAGGAAGCAACTTGCACCCGAAATGCGTCTTCCGCA
TTTCCCCCCTCCGACGAAGAAGGGCGTCCAGCGGGAGGGGCGTTTGTCTC
GCCGGGCTGCTCGCCTCGAGTTGGGGAGCTGCGCCGTCCGAGAGCTTCCT
CCTTTATGCACCATACAACACTCGACCACCGACTGAGCTCAGCTCCTCTC
ATGGCTGCCATGACCACAAAGATGTCTACGTTGTACCAGCTCACCGCCAC
CTCGCCCAGCGCCTTGGCCGAACACACCATCCTGTCGAGCTCCAGCAGCT
TGTCCGCATCGGGGAGCCCAGTGCCGGGAGGAAAGCTACCGGCGGCCGAT
TTTTCGAGTAGATGTTTCACCTCTTCCAAAGCTTTGTGGTTTTCTCTGGT
AAGCCCGTCTAGCTCTGCAAAGGAAGCAACTTGCACCCGAAATGCGTCTT
CCGCATTTCCCCCCTCCGACGAAGAAGGGCGTCCAGCGGGAGGGGCGTTT
GTCTCGCCGGGCTGCTCGCCTCGAGTTGGGGAGCTGCGCCGTCCGAGAGC
TTCCTCCTTT
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