mRNA_L-elsbetiae_contig8841.17867.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8841.17867.1
Unique NamemRNA_L-elsbetiae_contig8841.17867.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 1.870e-70
Identity = 140/238 (58.82%), Postives = 174/238 (73.11%), Query Frame = 2
Query:    2 SRHMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWSASIGAS-GGASEEAFLEWFVEEVANCEPGN-GARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGA 709
            SRH+ ++++QR+ELA  PG + YY A+RTGLCNAYLAASVV S+LV TSKTG +G AG+ L+ LS   PVV GLA  AAAALKAGDR +QTRRV KI D+A D+ +CC LAR LA +L+DG   GT+ T+  A      TTAG+GG  GGC WS  IGAS   A+EEA ++WFVEEVA+ EP N  ARK TP  QAG+KLG +HL TLL A+GR+CLRG  T +EKV+ L+ ++ P A
Sbjct:  688 SRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGAAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDARKTTPAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEA 925          
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 3.590e-70
Identity = 139/238 (58.40%), Postives = 173/238 (72.69%), Query Frame = 2
Query:    2 SRHMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWSASIGAS-GGASEEAFLEWFVEEVANCEPGN-GARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGA 709
            SRH+ ++++QR+ELA  PG + YY A+RTGLCNAYLAASVV S+LV TSKTG +G AG+ L+ LS   PVV GLA  AAAALKAGDR +QTRRV KI D+A D+ +CC LAR LA +L+DG   GT+ T+  A       TAG+GG  GGC WS  IGAS   A+EEA ++WFVEEVA+ EP N  ARK T   QAG+KLGK+HL TLL A+GR+CLRG  T +EKV+ L+ ++ P A
Sbjct:  476 SRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGSHATAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNVDARKTTAAVQAGRKLGKRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEA 713          
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 1.130e-68
Identity = 138/238 (57.98%), Postives = 170/238 (71.43%), Query Frame = 2
Query:    2 SRHMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWSASIGAS-GGASEEAFLEWFVEEVANCEPGN-GARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGA 709
            SRH+ ++++QR+ELA  PG + YY A+RTGLCNAYLAASVV S+LV TSKTG +G AG+ L+ LS   PVV GLA  AAAALKAGDR +QTRRV KI DMA D+ +CC LAR LA +L+DG   GT+ T   A      TTAG+GG  G C WS  IGAS   A+EEA ++WFVEEVA+ EP    ARK T   QAG+KLG +HL TLL A+GR+CLRG  T +EKV+ L+ ++ P A
Sbjct:  503 SRHVTNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVSSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGECGWSQDIGASPDSATEEAVMDWFVEEVADYEPNKLDARKTTAAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEA 740          
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: D7G8A7_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A7_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.570e-67
Identity = 146/282 (51.77%), Postives = 181/282 (64.18%), Query Frame = 2
Query:  224 ASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAG--GCDWSASIGASGG-ASEEAFLEWFVEEVANCEPGNGARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGAATGSVAPLDTLEKPLGWAPVS-APPHDGSLNREAEFAAMKAKLEALELADERRQAKLDAVQAENKKLMSKVGTIEKRIPKSSGDPSDLVDTGGGQ-IHLQRRKAKTQEERWDEMAES 1054
            A FAA ALKAGD NIQTRRV+K+ D+A DAVECCS+A+ L  RLTD ++  TI+TS    G    + AG G GAG   C+WS S G     AS+E F+EWF EE A+C P N   K TPEE+ G++LGK+H+  +L A+ R CL+G   IEEKVE+LL+VV P A    V+  +  E+     P + AP HDG L+  AEFAAM+AKLEALE+              EN KL  KV T+EK IPK  G+PSD VD GGGQ +  +R+  KTQEE W EMAES
Sbjct:  386 AGFAAEALKAGDNNIQTRRVIKMTDLAPDAVECCSVAKLLGLRLTDYLSDETITTSYDGRGGPVHSAAGFGEGAGIGACEWSQSNGGLPDCASDEDFMEWFAEEAASCVPNNTG-KSTPEEKTGRRLGKRHIRMILAAVERGCLQGTHAIEEKVEQLLKVVVPEAGAKPVSNSNAQERSFEQHPAAPAPSHDGGLDLHAEFAAMQAKLEALEI--------------ENGKLTRKVSTMEKSIPKPQGEPSDEVDVGGGQALAFKRKVKKTQEEVWQEMAES 652          
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 4.440e-62
Identity = 154/360 (42.78%), Postives = 202/360 (56.11%), Query Frame = 2
Query:    5 RHMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWSASIGASGGASEEAFLEWFVEEVANCEPGNGARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGAATGSVAPLDTLEKPLGWAP-VSAPPHDGSLNREAEFAAMKAKLEALELADERRQAKLD---------------------AVQAENKKLMSKVGTIEKRIPKSSGDPSDLVDTGGGQIHLQRRKAK 1018
            RH ED  +QRKELA       YY AVR+GLC AYLAASV+ S+ V TSKTGG+G AG  +KL+S   PVVGGL   A  AL+AGD  +QTRR+VKI  MA+DAV+CC LARRLA +LTDG+     +T+  A   R  TTAG+ GGA   D +      G  SEE   E+ +EEVA+ +           +  G +LGK+HL  LL AI R  L G+   E+K+E L+  + P A T   A L T ++ +  +P V  P HDG L   AEF AM+A LEAL+   E +Q                         AV++ NK+L  KV  +EKR+P+   +P D  +  G Q+  Q+ + K
Sbjct:  477 RHTEDMNIQRKELALPAFSNAYYSAVRSGLCQAYLAASVIDSDWVSTSKTGGMGKAGAAMKLMSSAVPVVGGLPELAGKALEAGDHYLQTRRLVKITAMASDAVDCCFLARRLALQLTDGLRNDAGATADNADEVRVDTTAGMNGGA---DMT-----PGDMSEEDVFEYLLEEVASYKRN---------DHGGVRLGKKHLRKLLKAIQRGSLDGSNGTEQKIEVLVLKILPEADTSLAATLSTPKEVIVRSPPVVTPAHDGGLPSRAEFTAMQAALEALKFDRETQQXXXXXXXXXXXXXXXXXXXXXXXXXAVESRNKQLREKVAAMEKRVPEGDCEPCDRGNAEGRQVLQQKLEMK 819          
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: A0A6H5KEA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA4_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 8.350e-61
Identity = 137/258 (53.10%), Postives = 163/258 (63.18%), Query Frame = 2
Query:  170 AGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVK-----------------------IADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWSASIGA-SGGASEEAFLEWFVEEVANCEPGNGARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGAATGSVAPLDTLEKPLGWAP-VSAPPHDGSLNREAEFAAMKAKLEALELADERRQ 868
            AGE ++LLS   PVVGGLASFAAAALKA D  +QTRRVVK                       I D+AADAVE CSLARRLA R+T+G+AAGTIST+  + G R               W+  +GA   G SEEA +EWF EEVAN E    A + TP EQAG++LGKQHL  LL A+G+  L G  T EEKVE+LL+V+A G+ +    P    +K L   P V AP HDG L+R+AEFAA+KAKLEALELADERRQ
Sbjct:  143 AGEAMQLLSHAVPVVGGLASFAAAALKARDHRMQTRRVVKHLQPSTYVHSRPTGLNQLFDDWQITDLAADAVERCSLARRLALRMTEGLAAGTISTTDNSVGGR--------------GWNLDLGALPDGTSEEAVMEWFTEEVANHEANTTASRGTPAEQAGRRLGKQHLKKLLMAVGQGRLLGTNTTEEKVEKLLEVIAGGSGSRVTKPPRAEDKSLVEYPAVPAPSHDGDLDRDAEFAALKAKLEALELADERRQ 386          
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 1.370e-57
Identity = 147/351 (41.88%), Postives = 196/351 (55.84%), Query Frame = 2
Query:    2 SRHMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWS-ASIGASGGASEEAFLEWFVEEVANCEP-GNGARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGAATGSVAPLDTLEKPLGWAPVSAPP--------------HDGSLNREAEFAAMKAKLEALELADERRQAKLDAVQAENKKLMSKVGTIEKRIPKSSGDPSDLVDTGGGQIHLQR 1006
            S HMED+ MQ +E       + Y+ AVR G+CNA+LA+SVVGSNLV TSKTGG+G AG+ LKLLS   P+VGGL   A+AALK GDR IQTRRVVKIAD+A DAVECCSLARRLA                             GGG     WS        GA +   +EWF +EVAN EP  + A + TPEEQAG++LGK+HL TLL A+G   L GA +IEEKVE L++ V P     +V+     +  +   P S                  D   +  +  AA+  ++++L ++       LD   A+  KL ++V ++++++ KS+ D   +V  GGGQ  +QR
Sbjct:  789 SSHMEDQWMQEREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXX-----XXXXXXXXXGGGG----WSQGEYALPDGARDRDVMEWFADEVANLEPQDHHATRTTPEEQAGRRLGKKHLQTLLLAVGNGRLEGAKSIEEKVELLVRTVLPEDEGNAVSTPQAPDVVVEQVPSSTDSVLRQTDSAASLLIGRDSVESDVSSVAALMGEIQSLRVS-------LDDSNAKQSKLENEVSSLKEKV-KSAPDSDGVVSIGGGQALMQR 1122          
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: A0A6H5JSF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF6_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.550e-55
Identity = 115/200 (57.50%), Postives = 138/200 (69.00%), Query Frame = 2
Query:    2 SRHMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWSASIGASGG-ASEEAFLEWFVEEVANCEPGN-GARKMTPEEQAGKKL 595
            SRH+ ++ +QR+ELA  PG + YY+A+RTGLCNAYLAASVV S+LV TSKTG +G AG+ LK LS   PVVGGLA  AAAAL AGDR +QTRRV KI D+A D+  CCSLAR LA +L+DG   G + T+  A      TTAG GG      WS  IGAS   A+EEA ++WFVEEVA+ EP N  ARK TP  Q  + L
Sbjct:    8 SRHVVNEAIQRRELALPPGPKAYYMAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLKFLSSAVPVVGGLAGLAAAALNAGDRYLQTRRVSKICDIAPDSAGCCSLARTLALQLSDGYVDGALPTTDTAEERGTHTTAGGGG------WSQDIGASPDPATEEAVMDWFVEEVADYEPNNLDARKTTPAVQVYEDL 201          
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 6.640e-55
Identity = 149/358 (41.62%), Postives = 190/358 (53.07%), Query Frame = 2
Query:    2 SRHMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDW-SASIGASGGASEEAFLEWFVEEVANCEPGNG-ARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGAATGSVA--------------PLDTLEKPLGWAPVSAPPHDGSLNREAEFAAMKAKLEALELADERRQAKLDAVQAENKKLMSKVGTIEKRIPKSSGDPSDLVDTGGGQIHLQRRKAKTQE 1027
            S HMED+ MQ +E       + Y+ AVR G+CNA+LA+SVVGSNLV TSKTGG+G AG+ L LLS   P+VGGL   AA ALK GDR IQTRRV KIAD+A DAVECCSLARRLA                           G         W         GA E+  +EWF +EV+N EP +  A +MTPEEQAG +LGK+HL TLL A+G  CL GA  IEEKVE L++ V P     +V+              P+D++ KP           D      +  AA+  ++ +L ++ +   AK   ++ E  K+M KV    K +P S G    ++  G GQ   QR   KT E
Sbjct:  816 SSHMEDQWMQGREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALALLSAAVPMVGGLGGIAAGALKTGDRYIQTRRVAKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXG---------WRQGEYALPDGAGEKDVMEWFADEVSNFEPQHRHATRMTPEEQAGSRLGKKHLQTLLLAVGTGCLEGANNIEEKVELLVRTVFPEDEGNAVSTPRAPNVLLEQVPSPIDSVLKPTDSPASPLVGRDSPEIDASTIAALMEEMRSLWVSLKDWNAKHSDLENEVSKIMEKV----KSLPDSDG----VLSIGEGQALKQRVYDKTPE 1156          
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 3.060e-54
Identity = 133/291 (45.70%), Postives = 176/291 (60.48%), Query Frame = 2
Query:    8 HMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWSASIGASGGASEEAFLEWFVEEVANCEPGNGARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGAATGSVAPLDTLEKPLGWAPVS-APPHDGSLNREAEFAAMKAKLEALELADERRQAKL 877
            H ED ++QRKELA  P  + YY AVR+GLCNAYLAASV+ S+ V T KTGG+G  G  L LLS   PV+ GLA  A  AL+ GD  +QTRR+VKI  MAAD +ECCSLARRLA +LTDG+   T     +A       TAG+ GG+G     A I       ++ F E+ +EEVA  E           +  GK+LGK+HL  LL AI R CL G+  I++K+E LL  + PGA   +     T +K +  +P + AP HDG L   A+ AA++A +E L LA ++++A+L
Sbjct:  505 HTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHCLQTRRLVKITAMAADTMECCSLARRLALQLTDGLKDDTGMMDDEADQVYTHITAGMNGGSG-SGRDADISPDDMIEDDVF-EYLLEEVARYERS---------DHGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMEALLLEILPGADIRTSETSSTPKKVIVRSPPALAPTHDGRLPSMADIAALQAAVEVLTLAKDKQRAEL 784          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FUA0_ECTSI1.870e-7058.82Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
D7FUA2_ECTSI3.590e-7058.40Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7FUA1_ECTSI1.130e-6857.98Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7G8A7_ECTSI1.570e-6751.77Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7FH90_ECTSI4.440e-6242.78Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
A0A6H5KEA4_9PHAE8.350e-6153.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPS8_ECTSI1.370e-5741.88Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JSF6_9PHAE1.550e-5557.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBQ0_9PHAE6.640e-5541.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZF6_9PHAE3.060e-5445.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8841contigL-elsbetiae_contig8841:3600..6828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size1055
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8841.17867.1prot_L-elsbetiae_contig8841.17867.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8841 4281..5775 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816962.1377747-UTR-L-elsbetiae_contig8841:3599..36741622816962.1377747-UTR-L-elsbetiae_contig8841:3599..3674Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8841 3600..3674 -
1691683944.3649535-UTR-L-elsbetiae_contig8841:3599..36741691683944.3649535-UTR-L-elsbetiae_contig8841:3599..3674Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8841 3600..3674 -
1622816962.14875-UTR-L-elsbetiae_contig8841:3998..40621622816962.14875-UTR-L-elsbetiae_contig8841:3998..4062Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8841 3999..4062 -
1691683944.3818169-UTR-L-elsbetiae_contig8841:3998..40621691683944.3818169-UTR-L-elsbetiae_contig8841:3998..4062Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8841 3999..4062 -
1622816962.1590562-UTR-L-elsbetiae_contig8841:4222..42801622816962.1590562-UTR-L-elsbetiae_contig8841:4222..4280Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8841 4223..4280 -
1691683944.4050705-UTR-L-elsbetiae_contig8841:4222..42801691683944.4050705-UTR-L-elsbetiae_contig8841:4222..4280Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8841 4223..4280 -
1622816962.215593-UTR-L-elsbetiae_contig8841:5775..58041622816962.215593-UTR-L-elsbetiae_contig8841:5775..5804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8841 5776..5804 -
1691683944.4628513-UTR-L-elsbetiae_contig8841:5775..58041691683944.4628513-UTR-L-elsbetiae_contig8841:5775..5804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8841 5776..5804 -
1622816962.2299724-UTR-L-elsbetiae_contig8841:5938..60581622816962.2299724-UTR-L-elsbetiae_contig8841:5938..6058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8841 5939..6058 -
1691683944.476568-UTR-L-elsbetiae_contig8841:5938..60581691683944.476568-UTR-L-elsbetiae_contig8841:5938..6058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8841 5939..6058 -
1622816962.2444654-UTR-L-elsbetiae_contig8841:6659..68281622816962.2444654-UTR-L-elsbetiae_contig8841:6659..6828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8841 6660..6828 -
1691683944.4945838-UTR-L-elsbetiae_contig8841:6659..68281691683944.4945838-UTR-L-elsbetiae_contig8841:6659..6828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8841 6660..6828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816962.1703746-CDS-L-elsbetiae_contig8841:4280..44651622816962.1703746-CDS-L-elsbetiae_contig8841:4280..4465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8841 4281..4465 -
1691683944.4178412-CDS-L-elsbetiae_contig8841:4280..44651691683944.4178412-CDS-L-elsbetiae_contig8841:4280..4465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8841 4281..4465 -
1622816962.1838431-CDS-L-elsbetiae_contig8841:4764..48571622816962.1838431-CDS-L-elsbetiae_contig8841:4764..4857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8841 4765..4857 -
1691683944.4293625-CDS-L-elsbetiae_contig8841:4764..48571691683944.4293625-CDS-L-elsbetiae_contig8841:4764..4857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8841 4765..4857 -
1622816962.1943686-CDS-L-elsbetiae_contig8841:4987..51211622816962.1943686-CDS-L-elsbetiae_contig8841:4987..5121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8841 4988..5121 -
1691683944.4412482-CDS-L-elsbetiae_contig8841:4987..51211691683944.4412482-CDS-L-elsbetiae_contig8841:4987..5121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8841 4988..5121 -
1622816962.2047164-CDS-L-elsbetiae_contig8841:5647..57751622816962.2047164-CDS-L-elsbetiae_contig8841:5647..5775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8841 5648..5775 -
1691683944.4521234-CDS-L-elsbetiae_contig8841:5647..57751691683944.4521234-CDS-L-elsbetiae_contig8841:5647..5775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8841 5648..5775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8841.17867.1

>prot_L-elsbetiae_contig8841.17867.1 ID=prot_L-elsbetiae_contig8841.17867.1|Name=mRNA_L-elsbetiae_contig8841.17867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=180bp
MLFVGEEVGLSTHRWDGSGHHLHERQGGRISLSHHGRGWRWGRRVRLECE
HWRLRRCERGGLPGMVRRRGGELRARQRCQENDPRRTGWQEAWEAAPLYA
TGCNWAELPPRGDYHRRKGRTATSGCCSRSRHWVRGTPGYTGETVGMGSC
VGATPRRQLESGSGVCCHESKVGSIRARG*
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mRNA from alignment at L-elsbetiae_contig8841:3600..6828-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8841.17867.1 ID=mRNA_L-elsbetiae_contig8841.17867.1|Name=mRNA_L-elsbetiae_contig8841.17867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3229bp|location=Sequence derived from alignment at L-elsbetiae_contig8841:3600..6828- (Laminarionema elsbetiae ELsaHSoW15)
GTCGCGACACATGGAAGACAAGGAGATGCAGAGGAAGGAGCTGGCCTTCC GTCCGGGTTGCAGAGTATACTACGTCGCCGTCAGAACCGGTTTATGCAAC GCGTACCTCGCTGCCAGCGTCGTCGGCAGTAACTTGGTTCAAACAAGCAA GACCGGTGGCCTGGGCATGGTGAGTGCTGCATAGCCCTGAGTTTGTGGAT TCGTAGGGTGCTTTGCTGTATAATTGTTCTGCCAAACGTCAGCCGTCTAC CCAACCTGTAAAAAAGTCTTTTCAGGGGAGACTGTTGAAGACACACTACT ACTGTACCCTCCCTCACCGCCCCCGGCTACAGCGGTAAAAAATCAGTATC CAAAAACATACATAGAAGCTGAAAAGCATAAAAGCCAGCATTTTTGTATT TAATCTCATACTGTGGTTTGAGTAACGTGTGCACGAGGTATGGTGTTTAA CGTATGGGGTTTGGTATATTCCGTATGGTCGGACACGTGTAGAATTTTCG TTTGTACGAGCTATGTGTGACGGGAGTGTTCAATTCTGCTTAGGTGAAGG TTTTAATTTTTTATAGAGGGACTAGGTAAGTGGTATTCATTCACCAAAAC TCGGCTACAAAGAGCGCACGTTCCACACTGCTGTTTGTGTTTGTTGCGGC CGCTACCGAGGTGGTTTAAAAAACAATTCGGAACAATTGTGCTTGTTTTG TTTATTCTGCATTATGTCCGTGCGTATGTACGTCATATCGAAATCGGACG TACCGGTTGCCCCCTTGCAGGCGGGCGAGGTCTTGAAATTGCTTTCTGGT GTGGCACCCGTGGTCGGTGGGCTAGCAAGCTTTGCAGCTGCAGCTTTGAA GGCCGGGGACCGCAACATCCAAACTCGACGAGTCGTCAAGGTGAGCCTGT CTTAGTGCTTAAGGCGACCATATGTCTTGAGCGTTGTTATGTACGTGGTA TGTGCGTCCCAGCCGTGACGCAGTGTCTCGACCAACGACAAACACGCGGA CCAACATATTTCTTGCTTTGACAGATCGCCGACATGGCAGCTGATGCGGT TGAATGCTGTTCGTTGGCGAGGAGGTTGGCCTTTCGACTCACCGATGGGA TGGCAGCGGGCACCATCTCCACGAGCGGCAAGGCGGCAGGATTTCGTTGT CCCACCACGGCAGGGGTTGGAGGTGGGGCAGGTGAGAACGATCTTCGGCG GCCGCGTTGGAAGATGCACTTGATTTTCCTTTGGTAGATAGCACCGTCCC CTCTCTTGCGGCTTTTTTTAGAGACCAAACCCATCGACGTGTGCAAAGGA GCCTGAGTCCCGCCTGGAACTTTGTTTTCGCGACATCGCTTCGTAGCAAT GTGTTTTTCACACGCTGAACGCTTCGGCATGCCGAACACCTTTTGGCAGA AAAACGGGCGTACACGTTGCTCTTATTATATGCTGGTTGTACAAGCGGCC ATGAACTCTGAGCCAGGCAGGTGCGTGGCATACCGGCCGATCAGAAGAAG TTGACCCCGTCGGGTATTTTGGTCATCCAGTGCTGTGCGCACTTTTGTGT TGGTTTTATGAGAGCGACGGAGCTTCCTACGGGCCACGCCAAACATTATT ATGAGCACAACGCCTAGACGAAAACGATGCTGTCATTCAATGACATAAAG TTTCTGTCCCAACGTTGAGTCCTGGTGCACGTTTCCGGGTCGATTGTGGG TTTTTAGGCGGGTGCGACTGGAGTGCGAGCATTGGCGCCTCAGGCGGTGC GAGCGAGGAGGCCTTCCTGGAATGGTTCGTCGAAGAGGTGGCGAACTGCG AGCCCGGCAACGGTGCCAGGAAAATGACCCCCGAAGAACAGGTGCATCTA AGCAGGACTCCAGCGCTGTGCCATTAGTGATACCGTGCGCCCGTTGCCAA ACTGGAAGCTATTTTTTGTCGGCGACGATAATTTTTTTCTAAGCTTTCTG TGCGCTCCCCGAACTCTTCAGGCTGGCAAGAAGCTTGGGAAGCAGCACCT CTATACGCTACTGGGTGCAATTGGGCGGAATTGCCTCCGAGGGGCGATTA CCATCGAAGAAAAGGTAGAGGGTTTATCGTCCGTAGTACCACAGGTGTGC TTTTTTTTTCCGCCGTGCGTCGTCTCAGCTGCCGTGTTTTGTCATGGCTT TGTCGAGCATCGCATATTGAGATTGTGATTAGGACCGAGAACCTTGGCCC GCCGCTCTGTGGAGGCGCCACCCCTGGAAAACTTTCTATTTTTCACTCTC GTACACATGACGTGGGGGCAAACGGTGCATGGCAGTTCGATTCAAGGTTT TGTTTTCGCTGCACCCTTGGCTCCTTCGGACACATGCTTTTGTTGGGTTT TACGGCGAACTAGGTCGAACGGCTACTTCAGGTTGTTGCTCCCGGAGCCG CCACTGGGTCCGTGGCACCCCTGGATACACTGGAGAAACCGTTGGGATGG GCTCCTGTGTCGGCGCCACCCCACGACGGCAGCTTGAATCGGGAAGCGGA GTTTGCTGCCATGAAAGCAAAGTTGGAAGCATTAGAGCTCGCGGATGAAA GGCGGCAAGCGAAGTTGGACGCAGTGCAGGCTGAAAACAAGAAGCTCATG AGCAAGGTCAGTTGCATCACTTACCGCCACAGGATTCGAAACCACGTTAT AGCATGTTAAAAGGGCGATACCTGTTTGTTGCCATTCTGAAACCATCCCA GCGCGCCCAAAATACGCAGTTGAGTTCACATCACCTTTGATTCAATCACA TTATCCTCACGGCTAGGTTGGAACCATCGAGAAACGCATCCCAAAGTCTT CCGGGGACCCGAGCGATCTGGTGGATACCGGTGAGTGCGGTTGCTCCAGC TTTTGAAGTACTAAACGATCGTCGCTCAGAGCAGAGCGTCGCCTAGCAGT CCGTCACTGTCTTCGTCCCTTCTGCGGCGTTTACTTCAAACTTTGTACTG CGTCTTTGTTTTTCGTGGGTTTGTCGTGTCGTCTCTCGTTCGTTCGTCTC CGTTGGCGGCGAACGGTAGGTGACATACCTCCTCTGAAACTTGTACGTGT ACTCTGCGCCTAACAAGCGTTAGGTCTTGTCTTCGAACCAGATATTCCGA CGGACGTCAACATTTTTTTGCGTTTCGAACCCGTCCGATGTCCACCGTTT GTAGGAGGAGGGCAAATTCATCTGCAGAGGCGTAAGGCGAAGACTCAGGA GGAACGCTGGGACGAGATGGCAGAATCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8841:3600..6828-

>mRNA_L-elsbetiae_contig8841.17867.1 ID=mRNA_L-elsbetiae_contig8841.17867.1|Name=mRNA_L-elsbetiae_contig8841.17867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1080bp|location=Sequence derived from alignment at L-elsbetiae_contig8841:3600..6828- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGTTCGTTGGCGAGGAGGTTGGCCTTTCGACTCACCGATGGGATGG
CAGCGGGCACCATCTCCACGAGCGGCAAGGCGGCAGGATTTCGTTGTCCC
ACCACGGCAGGGGTTGGAGGTGGGGCAGATGCTGTTCGTTGGCGAGGAGG
TTGGCCTTTCGACTCACCGATGGGATGGCAGCGGGCACCATCTCCACGAG
CGGCAAGGCGGCAGGATTTCGTTGTCCCACCACGGCAGGGGTTGGAGGTG
GGGCAGGCGGGTGCGACTGGAGTGCGAGCATTGGCGCCTCAGGCGGTGCG
AGCGAGGAGGCCTTCCTGGAATGGTTCGTCGAAGAGGTGGCGAACTGCGA
GCCCGGCAACGGTGCCAGGAAAATGACCCCCGAAGAACAGGCGGGTGCGA
CTGGAGTGCGAGCATTGGCGCCTCAGGCGGTGCGAGCGAGGAGGCCTTCC
TGGAATGGTTCGTCGAAGAGGTGGCGAACTGCGAGCCCGGCAACGGTGCC
AGGAAAATGACCCCCGAAGAACAGGCTGGCAAGAAGCTTGGGAAGCAGCA
CCTCTATACGCTACTGGGTGCAATTGGGCGGAATTGCCTCCGAGGGGCGA
TTACCATCGAAGAAAAGGCTGGCAAGAAGCTTGGGAAGCAGCACCTCTAT
ACGCTACTGGGTGCAATTGGGCGGAATTGCCTCCGAGGGGCGATTACCAT
CGAAGAAAAGGTCGAACGGCTACTTCAGGTTGTTGCTCCCGGAGCCGCCA
CTGGGTCCGTGGCACCCCTGGATACACTGGAGAAACCGTTGGGATGGGCT
CCTGTGTCGGCGCCACCCCACGACGGCAGCTTGAATCGGGAAGCGGAGTT
TGCTGCCATGAAAGCAAAGTTGGAAGCATTAGAGCTCGCGGATGAGTCGA
ACGGCTACTTCAGGTTGTTGCTCCCGGAGCCGCCACTGGGTCCGTGGCAC
CCCTGGATACACTGGAGAAACCGTTGGGATGGGCTCCTGTGTCGGCGCCA
CCCCACGACGGCAGCTTGAATCGGGAAGCGGAGTTTGCTGCCATGAAAGC
AAAGTTGGAAGCATTAGAGCTCGCGGATGA
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