mRNA_L-elsbetiae_contig880.17834.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig880.17834.1 vs. uniprot
Match: D7FK32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK32_ECTSI) HSP 1 Score: 321 bits (823), Expect = 5.480e-106 Identity = 156/246 (63.41%), Postives = 191/246 (77.64%), Query Frame = 1
Query: 1 KDYVAPKSCKSEEFGPHGQTALPRIFTSYEKVFVITQYWGDRYFHFLVENLARITFMLDILRAHTDIKIAVCAPKRHHRKVRMAYMEQFLELLGMDLSRVIYIKREIHADLAILPSSTACGKPDTQMVNMLRHALLQAVYPGSGGVPPPVARPVLVLIVRQTKRRLLNNDQVRDALIQEFPSYDIVEFMGTGPILAQLKTFATASLILAPHGAGLSNMMVSPLHTPVLEIGPLECSSCYIHLAVKV 738
KDY+ PKSCKS FGP + LP +EKV VI QYWGD Y+HFLVE L RIT MLD+L + DIK+AV APK ++ + L LLG+D RVI+I+ EIHADLAILPSS CG+PDTQMVNMLR LL+A+YP + G+PP V RPV+VL+VR+++R L NNDQVRDAL Q+FP +DIVEF G GPI+ Q++ FATAS+I+APHGAGLSNM+VSPLHTPVLEIG +CS+CY+HLA+KV
Sbjct: 122 KDYIVPKSCKSHLFGPRASSILPTSAERHEKVVVIAQYWGDEYYHFLVEALPRITLMLDVLVENLDIKVAVHAPKLGSES-HTTFIYELLALLGIDSERVIFIQTEIHADLAILPSSIPCGRPDTQMVNMLRSVLLKAMYPRTQGIPPEVPRPVIVLVVRESRRWLKNNDQVRDALKQDFPDHDIVEFWGNGPIIRQMRLFATASVIVAPHGAGLSNMVVSPLHTPVLEIGSPDCSACYLHLALKV 366
BLAST of mRNA_L-elsbetiae_contig880.17834.1 vs. uniprot
Match: A0A6H5JM62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM62_9PHAE) HSP 1 Score: 284 bits (727), Expect = 2.250e-93 Identity = 139/216 (64.35%), Postives = 172/216 (79.63%), Query Frame = 1
Query: 91 KVFVITQYWGDRYFHFLVENLARITFMLDILRAHTDIKIAVCAPKRHHRKVRMAYMEQFLELLGMDLSRVIYIKREIHADLAILPSSTACGKPDTQMVNMLRHALLQAVYPGSGGVPPPVARPVLVLIVRQTKRRLLNNDQVRDALIQEFPSYDIVEFMGTGPILAQLKTFATASLILAPHGAGLSNMMVSPLHTPVLEIGPLECSSCYIHLAVKV 738
KV VI QYWGD Y+HFLVE L RIT MLD+L + DIK+AV APK Y+ + L LLG++ RVI+I+ EIHADLAILPSST CG+PDTQMVNMLR LL+A+YP + G+PP V RPV+VL+VR+++R L NNDQVR+AL Q FP +DIVEF G GPI+ Q++ FATAS+I+APHGAGLSNM+ SPLHTPVLEIG +CS+CY+HLA+K+
Sbjct: 6 KVVVIAQYWGDEYYHFLVEALPRITLMLDVLVENLDIKVAVHAPKPGSES-HTTYIYELLALLGIESERVIFIQTEIHADLAILPSSTPCGRPDTQMVNMLRSVLLKAMYPRTRGIPPQVPRPVIVLVVRESRRWLKNNDQVREALKQYFPDHDIVEFWGIGPIIRQMQLFATASVIVAPHGAGLSNMVASPLHTPVLEIGSPDCSACYLHLALKL 220
BLAST of mRNA_L-elsbetiae_contig880.17834.1 vs. uniprot
Match: D7FKP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKP0_ECTSI) HSP 1 Score: 260 bits (664), Expect = 1.080e-81 Identity = 132/250 (52.80%), Postives = 180/250 (72.00%), Query Frame = 1
Query: 1 KDYVAPKSCKSE----EFGPHGQTALPRIFTSYEKVFVITQYWGDRYFHFLVENLARITFMLDILRAHTDIKIAVCAPKRHHRKVRMAYMEQFLELLGMDLSRVIYIKREIHADLAILPSSTACGKPDTQMVNMLRHALLQAVYPGSGGVPPPVARPVLVLIVRQTKRRLLNNDQVRDALIQEFPSYDIVEFMGTGPILAQLKTFATASLILAPHGAGLSNMMVSPLHTPVLEIGPLECSSCYIHLAVKV 738
+D VAP SC+S + H +T L + KV V+TQ +G Y+H LVENL+RIT +LD+L + DIK+AV + HR+ Y+ ELLG+ RV++I + IHADLA++P +T CGKP+ +V +LRHALLQ +YP +GGVPP +P++VLIVR+ KR L NN +VRDALIQ FP +D+VEF GT PI QL FATAS+I+APHGAGL+N++VSPLHT +LEIGP+EC +CY+++A+K+
Sbjct: 143 QDLVAPNSCRSSVNARDVNTH-ETRLRPGEARHGKVVVLTQEYGLAYYHLLVENLSRITIVLDMLLENPDIKVAVHSISESHRE----YIYGLFELLGISQDRVLFIHK-IHADLALVPPATVCGKPNAVLVTLLRHALLQGMYPDTGGVPPTPPKPIMVLIVRKNKRGLGNNTEVRDALIQNFPDHDVVEFFGTDPIREQLDLFATASVIVAPHGAGLANIVVSPLHTMILEIGPIECPTCYVNMAIKL 386
BLAST of mRNA_L-elsbetiae_contig880.17834.1 vs. uniprot
Match: D8LB14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB14_ECTSI) HSP 1 Score: 275 bits (704), Expect = 2.420e-81 Identity = 143/247 (57.89%), Postives = 177/247 (71.66%), Query Frame = 1
Query: 1 KDYVAPKSCKSEEF-GPHGQTALPRIFTSYEKVFVITQYWGDRYFHFLVENLARITFMLDILRAHTDIKIAVCAPKRHHRKVRMAYMEQFLELLGMDLSRVIYIKREIHADLAILPSSTACGKPDTQMVNMLRHALLQAVYPGSGGVPPPVARPVLVLIVRQTKRRLLNNDQVRDALIQEFPSYDIVEFMGTGPILAQLKTFATASLILAPHGAGLSNMMVSPLHTPVLEIGPLECSSCYIHLAVKV 738
K+Y+ PKSC S EF G + +LPR ++KVFVITQ+WGD YFHFL E L R+T MLD+L A+++IKIAV AP R Y + + LLG+ R+I++ EIHADLAILP STAC P+T MVNMLR ALL+ +YP S GVPPPV RP +++VRQ + L N+DQ+R AL +FP YD+VE P L QL TFA ASLI+APH AGLS M+VSPL+TPVLEIGP CSS Y+HLAVK+
Sbjct: 537 KNYIVPKSCGSAEFDGSSARWSLPRNAPRHDKVFVITQHWGDAYFHFLSECLPRVTLMLDVLLANSEIKIAVHAPPPTWSD-RKHYTSELMALLGIQEERLIFVDTEIHADLAILPESTACETPNTAMVNMLRSALLKGMYPSSAGVPPPVTRPPTLVLVRQKEGGLRNHDQIRKALQTKFPKYDVVESFSDSPALQQLHTFAVASLIVAPHTAGLSAMIVSPLNTPVLEIGPPTCSSGYMHLAVKL 782
BLAST of mRNA_L-elsbetiae_contig880.17834.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 262 bits (670), Expect = 6.140e-79 Identity = 132/254 (51.97%), Postives = 177/254 (69.69%), Query Frame = 1
Query: 4 DYVAPKSC------KSEEFGPHGQTALPRIFTSYEKVFVITQYWGDRYFHFLVENLARITFMLDILRAHTDIKIAVCA---PKRHHRKVRM-AYMEQFLELLGMDLSRVIYIKREIHADLAILPSSTACGKPDTQMVNMLRHALLQAVYPGSGGVPPPVARPVLVLIVRQTKRRLLNNDQVRDALIQEFPSYDIVEFMGTGPILAQLKTFATASLILAPHGAGLSNMMVSPLHTPVLEIGPLECSSCYIHLAVK 735
D++AP +C ++E+ +PR SYEKVF++ Q WG Y+HF VE+L RIT LDIL + DI I + K H V + A+ME F EL+G+ R++Y E+HA+LAI+P++T CG PD M+NMLR+ LQ ++PG+ GVPP RPV+VLIVR R L NND+V++AL + FPS+D+VEF GT P+ QLKTFATAS+I+APHGAGL+NM+V+PLHTPVLEI PLEC C++ LA+K
Sbjct: 550 DFIAPVNCARFAEDEAEDALREAAGDMPRYINSYEKVFMMAQEWGPNYYHFTVEHLPRITLALDILLENPDIMIVMHHHGHDKWHDTSVELEAHMELF-ELIGISRERIVYTSHEVHANLAIVPTTTNCGDPDPSMINMLRNRFLQGLFPGTDGVPPVPPRPVIVLIVRSNIRGLENNDEVKEALERNFPSFDVVEFFGTDPVRDQLKTFATASMIIAPHGAGLANMIVAPLHTPVLEIAPLECPPCFLRLALK 802
BLAST of mRNA_L-elsbetiae_contig880.17834.1 vs. uniprot
Match: D8LIQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ4_ECTSI) HSP 1 Score: 253 bits (647), Expect = 2.690e-78 Identity = 126/254 (49.61%), Postives = 168/254 (66.14%), Query Frame = 1
Query: 4 DYVAPKSCKSEE------FGPHGQTALPRIFTSYEKVFVITQYWGDRYFHFLVENLARITFMLDILRAHTDIKIAVCAPKRHHRKVRMAYMEQFL---ELLGMDLSRVIYIKREIHADLAILPSSTACGKPDTQMVNMLRHALLQAVYPGSGGVPPPVARPVLVLIVRQTKRRLLNNDQVRDALIQEFPSYDIVEFMGTGPILAQLKTFATASLILAPHGAGLSNMMVSPLHTPVLEIGPLECSSCYIHLAVKV 738
DY+ P +C + F + +P YEKVFV+TQ WG Y+HF VE+L RIT LDIL + DI IAV H +E + E+LG+ R+I +K IHADL I+P++T CG PD MVNMLR+ LQ ++P + GVPP RPV+VL+VR T R L NN++VR+AL FPS+D+VEF GT P+ QLKTFA+A++I+APHGAGL+NM+V+PLHTPVLEI P+ C C++ LA+K+
Sbjct: 193 DYILPLNCATAHKNEGRGFKENAVGPIPSYVKRYEKVFVMTQDWGPNYYHFTVEHLPRITLALDILLRNPDIMIAVHFHDTDHWHDTSTELEAHMGMFEILGISRERIILVKTRIHADLVIVPTTTVCGDPDAHMVNMLRNRFLQGLFPTTDGVPPAPPRPVIVLVVRTTLRGLKNNEEVREALEMNFPSFDVVEFFGTDPVRDQLKTFASAAMIIAPHGAGLANMVVAPLHTPVLEIAPIRCPPCFLRLALKL 446
BLAST of mRNA_L-elsbetiae_contig880.17834.1 vs. uniprot
Match: D7FWK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK4_ECTSI) HSP 1 Score: 250 bits (638), Expect = 1.140e-77 Identity = 130/259 (50.19%), Postives = 174/259 (67.18%), Query Frame = 1
Query: 4 DYVAPKSC------KSEEFGPHGQTALPRIFTSYEKVFVITQYWGDRYFHFLVENLARITFMLDILRAHTDIKIAVCAPKRHHRKVRM--------AYMEQFLELLGMDLSRVIYIKREIHADLAILPSSTACGKPDTQMVNMLRHALLQAVYPGSGGVPPPVARPVLVLIVRQTKRRLLNNDQVRDALIQEFPSYDIVEFMGTGPILAQLKTFATASLILAPHGAGLSNMMVSPLHTPVLEIGPLECSSCYIHLAVKV 738
D++AP +C ++E+ +PR SYEKVFV+ Q WG Y+HF VE+L RIT LDIL + DI I + RHH + + +ME F EL+G+ RV+ E+HA+LAI+P++T CG PD MVNMLR+ LQ+++P +GGVPP RPV+VLIVR R L NN++VR+AL F S+D+VEF GT P+ QLK FATA++I+APHGAGL+NM+V+PLHTPVLEI PLEC C++ LA K+
Sbjct: 133 DFIAPVNCARFTKDEAEDALLEATGDVPRYVESYEKVFVMAQEWGPNYYHFTVEHLPRITLALDILIDNPDIMIVM----RHHGQDKWHDTSTEFETHMELF-ELIGISRERVVDTSHEVHANLAIVPTTTICGDPDPHMVNMLRNRFLQSLFPDTGGVPPVPPRPVIVLIVRSNIRGLENNNEVREALEMNFTSFDVVEFFGTDPVRDQLKIFATAAMIIAPHGAGLANMIVAPLHTPVLEIAPLECPPCFLRLAFKL 386
BLAST of mRNA_L-elsbetiae_contig880.17834.1 vs. uniprot
Match: A0A6H5JZT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT9_9PHAE) HSP 1 Score: 253 bits (645), Expect = 2.410e-76 Identity = 127/255 (49.80%), Postives = 174/255 (68.24%), Query Frame = 1
Query: 4 DYVAPKSC------KSEEFGPHGQTALPRIFTSYEKVFVITQYWGDRYFHFLVENLARITFMLDILRAHTDIKIAVC---APKRHHRKVRM-AYMEQFLELLGMDLSRVIYIKREIHADLAILPSSTACGKPDTQMVNMLRHALLQAVYPGSGGVPPPVARPVLVLIVRQTKRRLLNNDQVRDALIQEFPSYDIVEFMGTGPILAQLKTFATASLILAPHGAGLSNMMVSPLHTPVLEIGPLECSSCYIHLAVKV 738
DY+ P +C + ++F + +P YEKVFV+TQ WG Y+HF VE+L RIT LDIL +++I IAV K H + A+M F E+LG+ R+I +K I+ADL I+P++T CG PD MVNMLR+ LQ ++P + GVPP RPV+VL+VR T R L NND+VR+AL FPS+D+VEF GT P+ QLKTFATA++I+APHGAGL+N++V+PLHTPVLEI P+ C C++ L++K+
Sbjct: 365 DYILPLNCATAHKHEGKDFKENAVGPVPTYVKRYEKVFVMTQDWGPNYYHFTVEHLPRITLALDILLENSEIMIAVHYHDTDKWHDTSTELEAHMGMF-EILGISRERIILVKTRIYADLVIVPTTTVCGDPDAHMVNMLRNRFLQGLFPTTNGVPPAPPRPVIVLVVRTTLRGLKNNDEVREALQINFPSFDVVEFFGTDPVRDQLKTFATAAMIIAPHGAGLANVVVAPLHTPVLEIAPIRCPPCFLRLSLKL 618
BLAST of mRNA_L-elsbetiae_contig880.17834.1 vs. uniprot
Match: A0A6H5JTU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU1_9PHAE) HSP 1 Score: 252 bits (644), Expect = 2.770e-76 Identity = 126/258 (48.84%), Postives = 177/258 (68.60%), Query Frame = 1
Query: 4 DYVAPKSCKS---------EEFGPHGQTALPRIFTSYEKVFVITQYWGDRYFHFLVENLARITFMLDILRAHTDIKIAVCAPKRH--HRKVRMAYMEQF--LELLGMDLSRVIYIKREIHADLAILPSSTACGKPDTQMVNMLRHALLQAVYPGSGGVPPPVARPVLVLIVRQTKRRLLNNDQVRDALIQEFPSYDIVEFMGTGPILAQLKTFATASLILAPHGAGLSNMMVSPLHTPVLEIGPLECSSCYIHLAVKV 738
DY+ P +C+ HG LPR +Y+KVFV+TQ W Y+HF VE+L RIT LDIL + +I I++ +R H+ + Q LE+LG++ RV+++ RE+HA+LAI+P+ST CG PD QMVNMLR+ LQ ++P + G+PP RPV+VL+VR R L+NN++V++AL + FPS+ +VEF GTG + QL+TFATA++I+APHGAGL+NMMV+PLHTPVLEIG L C C++ LA+K+
Sbjct: 365 DYIIPVNCQGPVRRELDFVRRISAHG---LPRSLLNYDKVFVMTQEWTPNYYHFTVEHLPRITLALDILLENPEIAISMHYYQRDPLHQDISAVQEVQMEMLEILGINRKRVVFVNREMHAELAIVPTSTNCGDPDLQMVNMLRNRFLQGLFPTTNGLPPAPPRPVIVLVVRNKLRGLMNNEEVKEALERNFPSFSVVEFFGTGSVRDQLETFATAAMIIAPHGAGLANMMVAPLHTPVLEIGTLACPPCFLRLALKL 619
BLAST of mRNA_L-elsbetiae_contig880.17834.1 vs. uniprot
Match: A0A6H5JMF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF5_9PHAE) HSP 1 Score: 244 bits (624), Expect = 2.940e-75 Identity = 134/285 (47.02%), Postives = 182/285 (63.86%), Query Frame = 1
Query: 4 DYVAPKSCKSEEFGPHGQTALPRIFTS---YEKVFVITQYWGDRYFHFLVENLARITFMLDILRAHTDIKIA-----------VCAPKRH------------------------HRKVRMA--YMEQFLELLGMDLSRVIYIKREIHADLAILPSSTACGKPDTQMVNMLRHALLQAVYPGSGGVPPPVARPVLVLIVRQTKRRLLNNDQVRDALIQEFPSYDIVEFMGTGPILAQLKTFATASLILAPHGAGLSNMMVSPLHTPVLEIGPLECSSCYIHLAVKV 738
+ VAP SC+S G + T R+ + KV V+TQ +G Y+H LVENL+RIT +LD+L + DIK+A + H H KV + Y+ ELLG+ RV++I++ IHADLA++P +T CGKP+ +V +LRHALLQ +YP +GGVPP +P++VLIVR KR L NND+VRDALIQ FP +D+VEF GT PI QL+ FATAS+I+APHGAGL+N++VSPLHT VLEIGP+EC +CY+++A+K+
Sbjct: 146 NLVAPNSCQSLVNGRNVDTNETRLGPGEARHGKVVVLTQEYGLAYYHLLVENLSRITIVLDVLLENPDIKVAQFSFLFFRAGTYACDQLHDDPMPSTCRLVKSCSRPLIFTVEKHAKVELLREYIYGLFELLGISQERVMFIEK-IHADLALVPPATVCGKPNAVLVTLLRHALLQGMYPDTGGVPPIPPKPIMVLIVRANKRGLGNNDEVRDALIQNFPDHDVVEFFGTDPIREQLELFATASVIVAPHGAGLANIVVSPLHTMVLEIGPIECPTCYVNMAIKL 429 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig880.17834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig880.17834.1 >prot_L-elsbetiae_contig880.17834.1 ID=prot_L-elsbetiae_contig880.17834.1|Name=mRNA_L-elsbetiae_contig880.17834.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=246bp KDYVAPKSCKSEEFGPHGQTALPRIFTSYEKVFVITQYWGDRYFHFLVENback to top mRNA from alignment at L-elsbetiae_contig880:29041..31449+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig880.17834.1 ID=mRNA_L-elsbetiae_contig880.17834.1|Name=mRNA_L-elsbetiae_contig880.17834.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2409bp|location=Sequence derived from alignment at L-elsbetiae_contig880:29041..31449+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig880:29041..31449+ >mRNA_L-elsbetiae_contig880.17834.1 ID=mRNA_L-elsbetiae_contig880.17834.1|Name=mRNA_L-elsbetiae_contig880.17834.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1476bp|location=Sequence derived from alignment at L-elsbetiae_contig880:29041..31449+ (Laminarionema elsbetiae ELsaHSoW15)back to top |