mRNA_L-elsbetiae_contig880.17833.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig880.17833.1 vs. uniprot
Match: A0A6H5JEH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH3_9PHAE) HSP 1 Score: 185 bits (470), Expect = 1.030e-51 Identity = 91/138 (65.94%), Postives = 108/138 (78.26%), Query Frame = 1
Query: 1 HVHREWTDFGEEMSRIQGAVVVRRPDLLTQAAGMLAPANSLDFVQTLQSYFTIFKSSLFPGRMMLVGHSLDEVRNVRRFVDAVVDGNSTAAMHLSAYYGGEIEVPMLKSDGYENTPTLVGMADVFVNQLGYVWNTKAR 414
H+H +W D GEEMSR+QGA VV R DL+ + G+LAPANSLDFV+TLQSYF IF+ SLFP R M+ GH L +V+ +RFVDAV +G+S AA +LS YY +EVP L SDGYEN PTLVGMADVFVN LGY+WN KAR
Sbjct: 763 HIHADWADLGEEMSRVQGAAVVERADLV-KIPGVLAPANSLDFVKTLQSYFAIFRGSLFPTRSMIEGHRLAQVQMNKRFVDAVANGDSEAARYLSTYYA-VVEVPKLASDGYENAPTLVGMADVFVNNLGYIWNEKAR 898
BLAST of mRNA_L-elsbetiae_contig880.17833.1 vs. uniprot
Match: D7FK32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK32_ECTSI) HSP 1 Score: 142 bits (359), Expect = 4.060e-38 Identity = 76/124 (61.29%), Postives = 88/124 (70.97%), Query Frame = 1
Query: 37 MSRIQGAVVVRRPDLLTQAAGMLAPANSLDFVQTLQSYFTIFKSSLFPGRMMLVGHSLDEVRNVRRFVDAVVDGNSTAAMHLSAYYGGEIEVPMLKSDGYENTPTLVGMADVFVNQLGYVWNTK 408
MSRI+GAVVVRRPDL +A ML P N+LDFV+ QSYF IF+SSLFP R M+ H L EV F AV +G+S A LS Y+ +EVP SDGYEN PTLVGMADVF+N+LGYVWN K
Sbjct: 1 MSRIKGAVVVRRPDL-AKAPAMLGPVNTLDFVKAFQSYFAIFRSSLFPTRQMIEEHYLVEVDKDWLFFQAVANGDSEVARFLSTYHA-TVEVPKPASDGYENIPTLVGMADVFINKLGYVWNEK 122
BLAST of mRNA_L-elsbetiae_contig880.17833.1 vs. uniprot
Match: D7FKN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN9_ECTSI) HSP 1 Score: 138 bits (347), Expect = 8.060e-36 Identity = 68/138 (49.28%), Postives = 92/138 (66.67%), Query Frame = 1
Query: 4 VHREWTDFGEEMSRIQGAVVVRRPDLLTQAAG---MLAPANSLDFVQTLQSYFTIFKSSLFPGRMMLVGHSLDEVRNVRRFVDAVVDGNSTAAMHLSAYYGGEIEVPMLKSDGYENTPTLVGMADVFVNQLGYVWNTK 408
+H EW D GEEMSR+ GA VVRRP+L+ + +L+P NSLD+V+TLQSYF IF+ SLF + L+E+ ++RF+DAV +G+ +AA +LSA Y L SDGYE+ +V MADVF+N+ GY WN K
Sbjct: 105 IHEEWMDIGEEMSRVDGAAVVRRPELIDAGSSPTPLLSPVNSLDYVKTLQSYFPIFRDSLFSSMRVETQEGLEELPMLQRFLDAVEEGDDSAAKYLSASYATGPAEEKLASDGYESVSAVVSMADVFINRDGYFWNDK 242
BLAST of mRNA_L-elsbetiae_contig880.17833.1 vs. uniprot
Match: D7FKP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKP0_ECTSI) HSP 1 Score: 135 bits (340), Expect = 3.540e-35 Identity = 70/138 (50.72%), Postives = 95/138 (68.84%), Query Frame = 1
Query: 1 HVHREWTDFGEEMSRIQGAVVVRRPDLL---TQAAGMLAPANSLDFVQTLQSYFTIFKSSLFPGRMMLVGH-SLDEVRNVRRFVDAVVDGNSTAAMHLSAYYGGEIEVPMLKSDGYENTPTLVGMADVFVNQLGYVWN 402
H+ EW D EEMS + GAVVVRRP+L+ + +L+PANSLD+V+TLQSYF+IFK SLF RMMLV H L E+ ++F+DAV +G+ AAM+LS Y E+ SDGYE+ P +V M+DV++ + G+ WN
Sbjct: 5 HILEEWMDLAEEMSHVDGAVVVRRPELIDVESSPTRLLSPANSLDYVKTLQSYFSIFKDSLF-SRMMLVKHPGLYELPISQKFLDAVEEGDDMAAMYLSTNYATEVTEVKEASDGYESVPAVVSMSDVYIEEHGFFWN 141
BLAST of mRNA_L-elsbetiae_contig880.17833.1 vs. uniprot
Match: A0A6H5JMF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF5_9PHAE) HSP 1 Score: 134 bits (338), Expect = 1.160e-34 Identity = 73/135 (54.07%), Postives = 94/135 (69.63%), Query Frame = 1
Query: 22 DFGEEMSRIQGAVVVRRPDLL---TQAAGMLAPANSLDFVQTLQSYFTIFKSSLFPGRMMLVGH-SLDEVRNVRRFVDAVVDGNSTAAMHLSAYYGGEIEVPMLKSDGYENTPTLVGMADVFVNQLGYVWNTKAR 414
D EEMS + GAVVVRRP+L+ + +L+PANSLD+V+TLQSYF IFK SLF RMMLV H L E+ ++F+DAV +G+ AAM+LS Y E+ V SDGYE+ P +V MADV+V + G+ WN KAR
Sbjct: 2 DLAEEMSHVDGAVVVRRPELIDVESSPTRLLSPANSLDYVKTLQSYFPIFKESLF-SRMMLVKHPGLYELPISQKFLDAVEEGDDMAAMYLSTNYATEVTVVKEASDGYESVPAVVSMADVYVEEHGFFWNDKAR 135
BLAST of mRNA_L-elsbetiae_contig880.17833.1 vs. uniprot
Match: A0A6H5KEC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC0_9PHAE) HSP 1 Score: 105 bits (261), Expect = 1.910e-23 Identity = 62/135 (45.93%), Postives = 76/135 (56.30%), Query Frame = 1
Query: 22 DFGEEMSRIQGAVVVRRPDLLTQAAGMLAPANSLDFVQTLQSYFTIFKSSLFPGRMMLVGHSLDEVRNVRRFVDAVVDGNSTAAMHLSAYYGGEIEVPMLKS----DGYENTPTLVGMADVFVNQLGYVWNTKAR 414
D E+SR++GAVVV+RP+L + G+L PAN LDFV+TL+SYF IF+SSLFP HLS YY G +V M S +GYE PTLV +ADVF+N GYVWN KAR
Sbjct: 7 DLRSEVSRVRGAVVVKRPEL-AERPGILTPANGLDFVETLRSYFPIFRSSLFPR-------------------------------HLSVYYPGP-DVDMASSFSSDNGYEGVPTLVSLADVFINSSGYVWNDKAR 108
BLAST of mRNA_L-elsbetiae_contig880.17833.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 103 bits (258), Expect = 4.540e-23 Identity = 70/148 (47.30%), Postives = 83/148 (56.08%), Query Frame = 1
Query: 1 HVHR-EWTDFGEEMSRIQGAVVVRRPDLLTQAAGMLAPANSLDFVQTLQSYFTIFKSSLFPGRMMLVGHSLD-------------EVRNVRRFVDAVVDGNSTAAMHLSAYYGGEIEVPMLKSDGYENTPTLVGMADVFVNQLGYVWN 402
H+H + D GEEMS IQGAVVVRRPDL T+ G LAPA +DFV+TLQSYF I + SL R M+ D + VR F+ AV +GNS AA L+ Y GE P + PTLV M DVFVN+ G VWN
Sbjct: 405 HLHTYQGGDLGEEMSHIQGAVVVRRPDL-TREPGSLAPAPDMDFVKTLQSYFPISQGSLL--RRMVEADDFDLESTTVHVHPRFPTLLGVRPFLGAVREGNSAAAQLLTPYCSGED--PGQDIEDCVRIPTLVSMVDVFVNRKGAVWN 547
BLAST of mRNA_L-elsbetiae_contig880.17833.1 vs. uniprot
Match: A0A6H5JZT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT9_9PHAE) HSP 1 Score: 100 bits (249), Expect = 7.180e-22 Identity = 67/146 (45.89%), Postives = 83/146 (56.85%), Query Frame = 1
Query: 1 HVHR-EWTDFGEEMSRIQGAVVVRRPDLLTQAAGMLAPANSLDFVQTLQSYFTIFKSSLFPGRM--------MLVGHSLD---EVRNVRRFVDAVVDGNSTAAMHLSAYYGGEIEVPMLKSDGYENTPTLVGMADVFVNQLGYVWN 402
HVH D GEEMS IQGAVVVRR DL +A G LAPA+ +DFV+T QSYF I +SSL G + H+L E+ V F+ AV +GN AA L+ Y GE P D PTLV MA+V++++ G VWN
Sbjct: 220 HVHTYRGGDLGEEMSHIQGAVVVRRTDL-ARAPGTLAPAHDVDFVRTFQSYFPISRSSLLRGMLEADEQNMTSTTTHTLPKFPELLGVTSFLGAVREGNPAAAELLTPYCSGED--PRQDIDDCVRIPTLVSMANVYISRKGAVWN 362
BLAST of mRNA_L-elsbetiae_contig880.17833.1 vs. uniprot
Match: D8LU03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU03_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 1.030e-21 Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 1
Query: 190 MLVGHSLDEVRNVRRFVDAVVDGNSTAAMHLSAYYGGEIEVPMLKSDGYENTPTLVGMADVFVNQLGYVWNTK 408
ML G LD V+ R F+DA+ D N AA +LS YY E+E P SDGYEN PTLVG+ADVF+N+LGYVWN K
Sbjct: 1 MLDGSRLDAVKGSRHFIDAIADENPAAARYLSTYYT-EVETPKRASDGYENAPTLVGIADVFINKLGYVWNAK 72
BLAST of mRNA_L-elsbetiae_contig880.17833.1 vs. uniprot
Match: D7FWK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK6_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 6.280e-21 Identity = 66/145 (45.52%), Postives = 80/145 (55.17%), Query Frame = 1
Query: 1 HVHREWTDFGEEMSRIQGAVVVRRPDLLTQAAGMLAPANSLDFVQTLQSYFTIFKSSLFPGRMMLVGHSLD-----------EVRNVRRFVDAVVDGNSTAAMHLSAYYGGEIEVPMLKSDGYENTPTLVGMADVFVNQLGYVWN 402
H +RE D GEEMS +QGAVVVRRPDL QA G +APA +DFV+TLQSYF I +SSL + G +L E+ F AV +GN AA L+ Y GE P PTLV MADV+++ G VWN
Sbjct: 213 HTYREG-DLGEEMSHVQGAVVVRRPDL-AQAPGSVAPAQDVDFVKTLQSYFPISQSSLLRRIVEADGFNLTSTTQHVEPAFAELLVATDFFGAVREGNPAAAELLTPYCSGED--PRQDISDCVRIPTLVSMADVYISCKGAVWN 353 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig880.17833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig880.17833.1 >prot_L-elsbetiae_contig880.17833.1 ID=prot_L-elsbetiae_contig880.17833.1|Name=mRNA_L-elsbetiae_contig880.17833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp HVHREWTDFGEEMSRIQGAVVVRRPDLLTQAAGMLAPANSLDFVQTLQSYback to top mRNA from alignment at L-elsbetiae_contig880:27477..28780+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig880.17833.1 ID=mRNA_L-elsbetiae_contig880.17833.1|Name=mRNA_L-elsbetiae_contig880.17833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1304bp|location=Sequence derived from alignment at L-elsbetiae_contig880:27477..28780+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig880:27477..28780+ >mRNA_L-elsbetiae_contig880.17833.1 ID=mRNA_L-elsbetiae_contig880.17833.1|Name=mRNA_L-elsbetiae_contig880.17833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig880:27477..28780+ (Laminarionema elsbetiae ELsaHSoW15)back to top |