mRNA_L-elsbetiae_contig8795.17824.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8795.17824.1
Unique NamemRNA_L-elsbetiae_contig8795.17824.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8795.17824.1 vs. uniprot
Match: A0A6H5JTX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTX4_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 2.240e-66
Identity = 96/106 (90.57%), Postives = 101/106 (95.28%), Query Frame = 1
Query:   13 HFYASHVIFAIWNAVNDPAFAWLIDNTTASGGDRRCACLPYGGPLWCLAFLIPWWPWSSEPGSLLVGVHFCVSICMFDSFLTYVLLVHCALLADLTTDNTVRNNYN 330
            HFYASHV+FAIWNA+NDPAFAWLIDNTTASGGDRR   + YGGPLWCLAFLIPWWPWSSEPGS LVG+HFCVSICMFDSFLTYVLLVHCALLADLTTDNT+RNNYN
Sbjct:   51 HFYASHVVFAIWNAINDPAFAWLIDNTTASGGDRRLPAIKYGGPLWCLAFLIPWWPWSSEPGSFLVGLHFCVSICMFDSFLTYVLLVHCALLADLTTDNTLRNNYN 156          
BLAST of mRNA_L-elsbetiae_contig8795.17824.1 vs. uniprot
Match: A0A7S4JC94_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4JC94_GUITH)

HSP 1 Score: 123 bits (308), Expect = 1.100e-30
Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 ISDSHFYASHVIFAIWNAVNDPAFAWLIDNTTASGGDRRCACLPYGGPLWCLAFLIPWWPWSSEPGSLLVGVHFCVSICMFDSFLTYVLLVHCALLADLTTDNTVRNNYN 330
            +  S FYA HV++A+WNA+NDP F W+ID   A    RR   L YGGP+W L+F++ W+PWSS+  S    +HF +S+ M+D FLTYV++  CALLADL  D+  R   N
Sbjct:   41 LQPSSFYAVHVVYAVWNAINDPLFGWMIDQQ-ADRSHRRLPVLKYGGPMWSLSFMVTWYPWSSDGNSWAAVLHFAMSMMMYDGFLTYVMITKCALLADLCVDSRERLKLN 149          
BLAST of mRNA_L-elsbetiae_contig8795.17824.1 vs. uniprot
Match: UPI00186448C5 (transmembrane protein 180 n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI00186448C5)

HSP 1 Score: 111 bits (278), Expect = 1.330e-26
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 ISDSHFYASHVIFAIWNAVNDPAFAWLIDNTTASGGDRRCACLPYGGPLWCLAFLIPWWPWSS-EPGSLLVGVHFCVSICMFDSFLTYVLLVHCALLADLT 300
            IS+S F+ S VI+ IWNAVNDP F +L DN+ A+   RR   + YG P + LAFL+PW+PW S EPG  L G+H  V++C FD  LT+VLL  CAL A+++
Sbjct:   44 ISESAFHQSQVIYMIWNAVNDPLFGYLQDNSRAACCTRRRLSILYGAPFYALAFLLPWFPWRSYEPGDWLSGLHLTVALCAFDGMLTFVLLAQCALFAEIS 144          
BLAST of mRNA_L-elsbetiae_contig8795.17824.1 vs. uniprot
Match: UPI001CF76E38 (transmembrane protein 180-like isoform X3 n=1 Tax=Varanus komodoensis TaxID=61221 RepID=UPI001CF76E38)

HSP 1 Score: 108 bits (270), Expect = 3.740e-26
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    1 ISDSHFYASHVIFAIWNAVNDPAFAWLIDNTTASGGDRRCACLPYGGPLWCLAFLIPWWPWSS-EPGSLLVGVHFCVSICMFDSFLTYVLLVHCALLADLTTDNTVR 318
            IS++ F+ + V+F IWNA+NDP F ++ DN+ A    RR   + YG PL+ LAFL+PW+PW   E G  L G+H  V++C FD  LT+VLL  CAL A+++T +  R
Sbjct:   61 ISEAAFHQAQVVFMIWNAINDPLFGYIQDNSKAPCCSRRQVSILYGAPLYALAFLLPWFPWKQYEEGDWLSGLHLIVALCAFDGLLTFVLLAQCALFAEISTRHESR 167          
BLAST of mRNA_L-elsbetiae_contig8795.17824.1 vs. uniprot
Match: A0A7S2RVJ6_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RVJ6_9STRA)

HSP 1 Score: 110 bits (274), Expect = 4.770e-26
Identity = 51/110 (46.36%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 ISDSHFYASHVIFAIWNAVNDPAFAWLIDNTTASGGDRRCACLPYGGPLWCLAFLIPWWPWSSEPGSLLVGVHFCVSICMFDSFLTYVLLVHCALLADLTTDNTVRNNYN 330
            I+ S+     V +AIWNA+NDP F W+ID++ A    RR   L YGGP+WC+ F+  ++PWS +  S L   H+  SI  +D FLTYVL+V CAL ADL  D+  R   N
Sbjct:   47 INPSYLIGGQVAYAIWNALNDPVFGWMIDHS-ADTSSRRLPVLKYGGPMWCMTFMGTFYPWSYDGQSYLAAAHYLFSIFCYDGFLTYVLIVKCALFADLCVDSEDRTRLN 155          
BLAST of mRNA_L-elsbetiae_contig8795.17824.1 vs. uniprot
Match: A0A8D2JFX4_VARKO (Uncharacterized protein n=2 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2JFX4_VARKO)

HSP 1 Score: 108 bits (270), Expect = 1.880e-25
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    1 ISDSHFYASHVIFAIWNAVNDPAFAWLIDNTTASGGDRRCACLPYGGPLWCLAFLIPWWPWSS-EPGSLLVGVHFCVSICMFDSFLTYVLLVHCALLADLTTDNTVR 318
            IS++ F+ + V+F IWNA+NDP F ++ DN+ A    RR   + YG PL+ LAFL+PW+PW   E G  L G+H  V++C FD  LT+VLL  CAL A+++T +  R
Sbjct:   61 ISEAAFHQAQVVFMIWNAINDPLFGYIQDNSKAPCCSRRQVSILYGAPLYALAFLLPWFPWKQYEEGDWLSGLHLIVALCAFDGLLTFVLLAQCALFAEISTRHESR 167          
BLAST of mRNA_L-elsbetiae_contig8795.17824.1 vs. uniprot
Match: UPI0020261F8C (transmembrane protein 180-like n=3 Tax=Gekkota TaxID=8560 RepID=UPI0020261F8C)

HSP 1 Score: 108 bits (269), Expect = 2.330e-25
Identity = 49/102 (48.04%), Postives = 70/102 (68.63%), Query Frame = 1
Query:    1 ISDSHFYASHVIFAIWNAVNDPAFAWLIDNTTASGGDRRCACLPYGGPLWCLAFLIPWWPWSS-EPGSLLVGVHFCVSICMFDSFLTYVLLVHCALLADLTT 303
            IS+  F+ + V+F IWNA+NDP F ++ DN++A+   RR A + YG PL+ LAFL+PW+PW   + G  L G+H  V++C FD  LT+VLL  CAL A+ +T
Sbjct:   42 ISEGAFHQAQVVFMIWNAINDPLFGYIQDNSSAACCSRRQASIFYGAPLYALAFLLPWFPWKQYQEGDWLSGLHLVVALCAFDGMLTFVLLAQCALFAETST 143          
BLAST of mRNA_L-elsbetiae_contig8795.17824.1 vs. uniprot
Match: A0A671RZN1_9TELE (Major facilitator superfamily domain containing 13B (pseudogene) n=2 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671RZN1_9TELE)

HSP 1 Score: 105 bits (263), Expect = 4.360e-25
Identity = 49/101 (48.51%), Postives = 68/101 (67.33%), Query Frame = 1
Query:    1 ISDSHFYASHVIFAIWNAVNDPAFAWLIDNTTASGGDRRCACLPYGGPLWCLAFLIPWWPWSS-EPGSLLVGVHFCVSICMFDSFLTYVLLVHCALLADLT 300
            IS++ F+ S V+F IWNA+NDP F +L DN+      RR   + YG PL+CL+FL+ W+PW + EP   L GVH  V++C FD  LT+VLL  CAL A+++
Sbjct:   40 ISETAFHQSQVVFMIWNALNDPLFGYLQDNSRMECCSRRRLSILYGAPLYCLSFLLAWFPWRTYEPEDWLSGVHLMVTLCAFDGMLTFVLLAQCALFAEIS 140          
BLAST of mRNA_L-elsbetiae_contig8795.17824.1 vs. uniprot
Match: A0A851D5X7_TODME (MF13A protein (Fragment) n=2 Tax=Coraciiformes TaxID=8936 RepID=A0A851D5X7_TODME)

HSP 1 Score: 105 bits (263), Expect = 4.490e-25
Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    1 ISDSHFYASHVIFAIWNAVNDPAFAWLIDNTTASGGDRRCACLPYGGPLWCLAFLIPWWPWSS-EPGSLLVGVHFCVSICMFDSFLTYVLLVHCALLADLTTDNTVR 318
            IS+  F+ + V+F IWNA+NDP F ++ DN+  +   RR   + YG PL+ LAFL+PW+PW   E G  L G+H  V++C FD  LT+VLL  CAL A+++T +  R
Sbjct:   40 ISEVAFHQAQVVFMIWNAINDPLFGYIQDNSKLACCSRRRVSILYGAPLYALAFLLPWFPWKHYEEGDWLSGLHLIVALCAFDGLLTFVLLAQCALFAEISTRHESR 146          
BLAST of mRNA_L-elsbetiae_contig8795.17824.1 vs. uniprot
Match: A0A670KCU1_PODMU (Transmembrane protein 180-like n=4 Tax=Lacertinae TaxID=162266 RepID=A0A670KCU1_PODMU)

HSP 1 Score: 107 bits (266), Expect = 5.900e-25
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 1
Query:    1 ISDSHFYASHVIFAIWNAVNDPAFAWLIDNTTASGGDRRCACLPYGGPLWCLAFLIPWWPWSS-EPGSLLVGVHFCVSICMFDSFLTYVLLVHCALLADLTT 303
            IS+S F+ + V+F IWNA+NDP F ++ DN+      RR   + YG PL+ LAFL+PW+PW   E G  L G+H  V++C FD  LT+VLL  CAL A+++T
Sbjct:   42 ISESAFHQAQVVFMIWNAINDPLFGYIQDNSKVPCCSRRRFSILYGAPLYALAFLLPWFPWKQYEEGDWLSGLHLIVALCAFDGLLTFVLLAQCALFAEIST 143          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8795.17824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTX4_9PHAE2.240e-6690.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4JC94_GUITH1.100e-3049.09Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
UPI00186448C51.330e-2652.48transmembrane protein 180 n=1 Tax=Megalops cyprino... [more]
UPI001CF76E383.740e-2646.73transmembrane protein 180-like isoform X3 n=1 Tax=... [more]
A0A7S2RVJ6_9STRA4.770e-2646.36Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A8D2JFX4_VARKO1.880e-2546.73Uncharacterized protein n=2 Tax=Varanus komodoensi... [more]
UPI0020261F8C2.330e-2548.04transmembrane protein 180-like n=3 Tax=Gekkota Tax... [more]
A0A671RZN1_9TELE4.360e-2548.51Major facilitator superfamily domain containing 13... [more]
A0A851D5X7_TODME4.490e-2545.79MF13A protein (Fragment) n=2 Tax=Coraciiformes Tax... [more]
A0A670KCU1_PODMU5.900e-2548.04Transmembrane protein 180-like n=4 Tax=Lacertinae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8795contigL-elsbetiae_contig8795:6648..7920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.5
Seed ortholog evalue2e-55
Seed eggNOG ortholog2880.D7FLP1
Preferred nameMFSD13B
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MFS/sugar transport protein
EggNOG OGs2CMK7@1,2QQN2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size336
Cds size336
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8795.17824.1prot_L-elsbetiae_contig8795.17824.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8795 6648..7920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816958.3325586-CDS-L-elsbetiae_contig8795:6647..67791622816958.3325586-CDS-L-elsbetiae_contig8795:6647..6779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 6648..6779 +
1691683941.4872346-CDS-L-elsbetiae_contig8795:6647..67791691683941.4872346-CDS-L-elsbetiae_contig8795:6647..6779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 6648..6779 +
1622816958.3461292-CDS-L-elsbetiae_contig8795:7003..71321622816958.3461292-CDS-L-elsbetiae_contig8795:7003..7132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 7004..7132 +
1691683941.5048048-CDS-L-elsbetiae_contig8795:7003..71321691683941.5048048-CDS-L-elsbetiae_contig8795:7003..7132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 7004..7132 +
1622816958.3569272-CDS-L-elsbetiae_contig8795:7845..79201622816958.3569272-CDS-L-elsbetiae_contig8795:7845..7920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 7846..7920 +
1691683941.5152445-CDS-L-elsbetiae_contig8795:7845..79201691683941.5152445-CDS-L-elsbetiae_contig8795:7845..7920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8795 7846..7920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8795.17824.1

>prot_L-elsbetiae_contig8795.17824.1 ID=prot_L-elsbetiae_contig8795.17824.1|Name=mRNA_L-elsbetiae_contig8795.17824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
ISDSHFYASHVIFAIWNAVNDPAFAWLIDNTTASGGDRRCACLPYGGPLW
CLAFLIPWWPWSSEPGSLLVGVHFCVSICMFDSFLTYVLLVHCALLADLT
TDNTVRNNYNK*
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mRNA from alignment at L-elsbetiae_contig8795:6648..7920+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8795.17824.1 ID=mRNA_L-elsbetiae_contig8795.17824.1|Name=mRNA_L-elsbetiae_contig8795.17824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1273bp|location=Sequence derived from alignment at L-elsbetiae_contig8795:6648..7920+ (Laminarionema elsbetiae ELsaHSoW15)
ATCAGCGACAGCCATTTCTATGCAAGCCACGTTATATTCGCCATATGGAA CGCCGTCAACGACCCGGCGTTCGCGTGGCTCATCGACAACACCACCGCTT CTGGCGGGGACCGCAGGTGCGCCTGTCTGCCTGTCTGCCAAAGGACGTAA CGCATCTTGATCTCCTCTCACTTGCTACATAGAGTACGCGCTTCATCCCG ACGTGGATAATTCAAAAACTCAAGGCTTCCCACCAACACTGCCCCCCGCA ACAACAACAACAGCAACAACAACAACAAACAAGCACAAAAACAACAACAT GCTCGACCTCATCATGCGTGCGTGTTTCTTTACTTCATAGGTTGCCGGCG ATCAAGTACGGCGGGCCGCTGTGGTGTCTGGCGTTTCTGATCCCGTGGTG GCCGTGGTCGTCCGAACCAGGCTCCCTGCTTGTCGGGGTACACTTCTGCG TGTCCATCTGCATGTTTGATAGCTTCCTAACCTACGTGAGTGGTTTTGGC CGATCCTCTTTCAAAGACCCGCCGGAAAAACCCAGATTACGGGCCCGCGC GACCCTTCTTACATAAACACAAGTATTTTCTTGCTCCAAGAGGTCGATTT CCGAAACTATCATGTCCTCCTTTTTCCAGTCTGATGACTTCCCCCCCCGC TAGACTGTTTGGTCCTATTTTTTAGGTTGACGACTTCCCACGCGAAACAC CACGAACAGCATTCACATTGATACAACAGACCTTCAGGGTTTGTCGGGGC GCTTCGTCTCACGGTGTCAAGACAAAACGCAGCCGATCCAGCAGCTCCCG CCGAGAAACGGTTTGGGTCCGTTGCTTGTCCTCTTTGGCCATCATTTTCA AGCCCTGTCTGCTCGCTTCTGTAACAGTAGTCGCGAATCTCCTCCAGCTT TTTTTCTACATTCGGGAGGCGTCGGGTACATTTGACGCCCCCTGCCCGGC TCGCGGTGGTTCCAACTCCAATTCCGACTCAGAACCGAGCCTTTGATTTC GGCGTGTCTGGGAAACGCAGGCCTCGGGGCGGCCGTTGACCTCACGCAGA GGCCCCTCAGCGCCCTTTTGCTGGAACCCACCACCCGCCGCATGCGTGTG TTCTCTCCGTCGCGCTCAAGATCAGGCCCTGTATGTATGCGTGTGGCTTC CGTTGTTGGATTTGTTTGCCCCCCCCCCCCCCTCGAACTACAATGCAGGT TCTTCTGGTTCACTGCGCCTTGCTCGCCGACCTCACCACTGACAACACAG TTCGCAACAACTACAACAAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8795:6648..7920+

>mRNA_L-elsbetiae_contig8795.17824.1 ID=mRNA_L-elsbetiae_contig8795.17824.1|Name=mRNA_L-elsbetiae_contig8795.17824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig8795:6648..7920+ (Laminarionema elsbetiae ELsaHSoW15)
ATCAGCGACAGCCATTTCTATGCAAGCCACGTTATATTCGCCATATGGAA
CGCCGTCAACGACCCGGCGTTCGCGTGGCTCATCGACAACACCACCGCTT
CTGGCGGGGACCGCAGGTGCGCCTGTCTGCCTATCAGCGACAGCCATTTC
TATGCAAGCCACGTTATATTCGCCATATGGAACGCCGTCAACGACCCGGC
GTTCGCGTGGCTCATCGACAACACCACCGCTTCTGGCGGGGACCGCAGGT
GCGCCTGTCTGCCTTACGGCGGGCCGCTGTGGTGTCTGGCGTTTCTGATC
CCGTGGTGGCCGTGGTCGTCCGAACCAGGCTCCCTGCTTGTCGGGGTACA
CTTCTGCGTGTCCATCTGCATGTTTGATAGCTTCCTAACCTACTACGGCG
GGCCGCTGTGGTGTCTGGCGTTTCTGATCCCGTGGTGGCCGTGGTCGTCC
GAACCAGGCTCCCTGCTTGTCGGGGTACACTTCTGCGTGTCCATCTGCAT
GTTTGATAGCTTCCTAACCTACGTTCTTCTGGTTCACTGCGCCTTGCTCG
CCGACCTCACCACTGACAACACAGTTCGCAACAACTACAACAAGTGAGTT
CTTCTGGTTCACTGCGCCTTGCTCGCCGACCTCACCACTGACAACACAGT
TCGCAACAACTACAACAAGTGA
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