mRNA_L-elsbetiae_contig8785.17816.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8785.17816.1
Unique NamemRNA_L-elsbetiae_contig8785.17816.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8785.17816.1 vs. uniprot
Match: A0A6H5KZP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP9_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.200e-32
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:   25 DVISHFSLALSQAEKMGMGNLRYTVTFYPGSCLVHVNLSPLVVTLVHRDAQGQS-DNFNYGDALDLIPELTRALQPLRAHVRDVY 276
            ++  HF+LA  QA+KMGMGNLRYTVTFYP +CLVHVNL+PLVVTLVH+D Q  S D  N+GDALDLIPE++ AL+PLR  V   Y
Sbjct:   56 ELAQHFALAAVQADKMGMGNLRYTVTFYPQACLVHVNLAPLVVTLVHQDGQDDSRDKLNFGDALDLIPEMSDALEPLRKQVLRAY 140
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BLAST of mRNA_L-elsbetiae_contig8785.17816.1 vs. uniprot
Match: A0A7S2APW0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APW0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.980e-8
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:   22 LDVISHFSLALSQAEKMGMGNLRYTVTFYPGSCLVHVNLSPLVVTLVHRDAQGQSDNFNYGDALDLIPELTRALQPLRA 258
            L + + FS+   Q EKM +G +R    FY    L+HVN+SPLV+TL+ +         N G  L ++P L  +L+P+ A
Sbjct:   52 LHMSALFSITAVQIEKMELGAVRSVTAFYQNMMLIHVNISPLVLTLIAKPGA------NAGALLAMVPSLNESLEPISA 124
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BLAST of mRNA_L-elsbetiae_contig8785.17816.1 vs. uniprot
Match: A0A7S0MJ25_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MJ25_9CRYP)

HSP 1 Score: 52.8 bits (125), Expect = 1.190e-6
Identity = 28/77 (36.36%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:   34 SHFSLALSQAEKMGMGNLRYTVTFYPGSCLVHVNLSPLVVTLVHRDAQGQSDNFNYGDALDLIPELTRALQPLRAHV 264
            S F++A  Q  K+ MG  +   T Y    +VH+N+SPL+VT+V         + N    L L P+L  AL+P+R+ V
Sbjct:   52 SAFAIAADQVSKLEMGRSKTITTMYQNQVVVHMNMSPLIVTMV------SDSDVNIAVLLALAPKLALALEPIRSAV 122
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BLAST of mRNA_L-elsbetiae_contig8785.17816.1 vs. uniprot
Match: A0A7S2AB55_9EUKA (Hypothetical protein n=1 Tax=Stereomyxa ramosa TaxID=1078864 RepID=A0A7S2AB55_9EUKA)

HSP 1 Score: 48.1 bits (113), Expect = 7.350e-5
Identity = 28/77 (36.36%), Postives = 39/77 (50.65%), Query Frame = 1 
Query:   40 FSLALSQAEKMGMGNLRYTVTFYPGSCLVHVNLSPLVVTLVHRDAQGQSDNFNYGDALDLIPELTRALQPLRAHVRD 270
            F +A  QA+K+ MG     V+FY    +VH+N SPL +T+   +     D  N G  L L  +L   L PLR  V +
Sbjct:   54 FGVATDQADKLKMGKNETIVSFYEDLVMVHINHSPLSITMFVDE-----DEANVGILLALADDLKTVLDPLRDSVEE 125
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8785.17816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KZP9_9PHAE2.200e-3267.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2APW0_9STRA6.980e-836.71Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0MJ25_9CRYP1.190e-636.36Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S2AB55_9EUKA7.350e-536.36Hypothetical protein n=1 Tax=Stereomyxa ramosa Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8785contigL-elsbetiae_contig8785:653..934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRagulator complex protein LAMTOR3
Ec32 orthologEc-18_001670.1
Exons1
Model size282
Cds size279
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816957.6043854-UTR-L-elsbetiae_contig8785:652..6551622816957.6043854-UTR-L-elsbetiae_contig8785:652..655Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8785 653..655 +
1691683940.9412117-UTR-L-elsbetiae_contig8785:652..6551691683940.9412117-UTR-L-elsbetiae_contig8785:652..655Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8785 653..655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816957.615807-CDS-L-elsbetiae_contig8785:655..9341622816957.615807-CDS-L-elsbetiae_contig8785:655..934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8785 656..934 +
1691683940.951419-CDS-L-elsbetiae_contig8785:655..9341691683940.951419-CDS-L-elsbetiae_contig8785:655..934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8785 656..934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8785.17816.1prot_L-elsbetiae_contig8785.17816.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8785 656..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8785.17816.1

>prot_L-elsbetiae_contig8785.17816.1 ID=prot_L-elsbetiae_contig8785.17816.1|Name=mRNA_L-elsbetiae_contig8785.17816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MFCFGALDVISHFSLALSQAEKMGMGNLRYTVTFYPGSCLVHVNLSPLVV
TLVHRDAQGQSDNFNYGDALDLIPELTRALQPLRAHVRDVYV*
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mRNA from alignment at L-elsbetiae_contig8785:653..934+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8785.17816.1 ID=mRNA_L-elsbetiae_contig8785.17816.1|Name=mRNA_L-elsbetiae_contig8785.17816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=282bp|location=Sequence derived from alignment at L-elsbetiae_contig8785:653..934+ (Laminarionema elsbetiae ELsaHSoW15)
TCAATGTTTTGTTTCGGCGCACTCGATGTCATCTCCCATTTCTCTCTCGC
TCTCTCGCAGGCGGAGAAAATGGGGATGGGCAACCTTCGATACACAGTGA
CCTTCTACCCAGGGTCGTGCCTCGTCCACGTCAACCTCTCCCCCCTCGTG
GTGACTTTGGTCCACAGGGACGCCCAGGGGCAGAGCGACAATTTTAACTA
CGGCGACGCCCTTGATTTGATCCCTGAGCTGACGAGAGCGCTGCAGCCTC
TACGGGCACATGTGAGAGATGTATATGTTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8785:653..934+

>mRNA_L-elsbetiae_contig8785.17816.1 ID=mRNA_L-elsbetiae_contig8785.17816.1|Name=mRNA_L-elsbetiae_contig8785.17816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig8785:653..934+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTTGTTTCGGCGCACTCGATGTCATCTCCCATTTCTCTCTCGCTCT
CTCGCAGGCGGAGAAAATGGGGATGGGCAACCTTCGATACACAGTGACCT
TCTACCCAGGGTCGTGCCTCGTCCACGTCAACCTCTCCCCCCTCGTGGTG
ACTTTGGTCCACAGGGACGCCCAGGGGCAGAGCGACAATTTTAACTACGG
CGACGCCCTTGATTTGATCCCTGAGCTGACGAGAGCGCTGCAGCCTCTAC
GGGCACATGTGAGAGATGTATATGTTTAGATGTTTTGTTTCGGCGCACTC
GATGTCATCTCCCATTTCTCTCTCGCTCTCTCGCAGGCGGAGAAAATGGG
GATGGGCAACCTTCGATACACAGTGACCTTCTACCCAGGGTCGTGCCTCG
TCCACGTCAACCTCTCCCCCCTCGTGGTGACTTTGGTCCACAGGGACGCC
CAGGGGCAGAGCGACAATTTTAACTACGGCGACGCCCTTGATTTGATCCC
TGAGCTGACGAGAGCGCTGCAGCCTCTACGGGCACATGTGAGAGATGTAT
ATGTTTAG
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