mRNA_L-elsbetiae_contig1013.178.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1013.178.1
Unique NamemRNA_L-elsbetiae_contig1013.178.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1013.178.1 vs. uniprot
Match: A0A6H5L8K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8K1_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 4.360e-66
Identity = 104/136 (76.47%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:  205 TTWYDDSVERISNPAAYARKNAPEQAPTPELQEEISLTAPGGE-AKLQVHMLKERPFWSKVSLFWTFRLADVEGD-STEGVVVGLVFDTWTGSIEISENAVIKVDEIQRPIMGGSWTTKTDFGALEIKIVPYWTGE 606
            TTW D+S+ER SNP A+ARKN P   PTPELQ+E+SL  PGG+ AKL++H+LKER FWSKVSLFWTFRLADVEGD + E +VV LVFD+WTGSIEISENA++KVDEIQ+PIMGGSW TKTDFG LEIKIVPYWTGE
Sbjct:   23 TTWVDESIERYSNPVAFARKNTP--MPTPELQKEVSLAVPGGKNAKLEIHLLKERSFWSKVSLFWTFRLADVEGDDNAEQMVVALVFDSWTGSIEISENAIVKVDEIQKPIMGGSWITKTDFGRLEIKIVPYWTGE 156
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BLAST of mRNA_L-elsbetiae_contig1013.178.1 vs. uniprot
Match: D7FVY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY9_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 1.600e-65
Identity = 101/128 (78.91%), Postives = 114/128 (89.06%), Query Frame = 1 
Query:  283 PTPELQEEISLTAPGGE-AKLQVHMLKERPFWSKVSLFWTFRLADVEGD-STEGVVVGLVFDTWTGSIEISENAVIKVDEIQRPIMGGSWTTKTDFGALEIKIVPYWTGECTMYELWHEGKEVYTFFA 660
            PTPELQ+E+SL  PGG+ AKL++H+LKER FWSKVS+FWTFRL+DVEGD + E +VV LVFD+WTGSIEISENA++KVDEIQRPIMGGSW TKTDFG LEIKIVPYWTG    YELWHEGKEVYTFFA
Sbjct:    2 PTPELQKEVSLAVPGGKNAKLEIHLLKERSFWSKVSIFWTFRLSDVEGDDNAEQMVVALVFDSWTGSIEISENAIVKVDEIQRPIMGGSWITKTDFGRLEIKIVPYWTGY--QYELWHEGKEVYTFFA 127
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1013.178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8K1_9PHAE4.360e-6676.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVY9_ECTSI1.600e-6578.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1013contigL-elsbetiae_contig1013:7079..9611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002670.1
Exons4
Model size663
Cds size663
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1013.178.1prot_L-elsbetiae_contig1013.178.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1013 7079..9611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815244.4636075-CDS-L-elsbetiae_contig1013:7078..74231622815244.4636075-CDS-L-elsbetiae_contig1013:7078..7423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1013 7079..7423 +
1691682792.488598-CDS-L-elsbetiae_contig1013:7078..74231691682792.488598-CDS-L-elsbetiae_contig1013:7078..7423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1013 7079..7423 +
1622815244.4738014-CDS-L-elsbetiae_contig1013:8127..82591622815244.4738014-CDS-L-elsbetiae_contig1013:8127..8259Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1013 8128..8259 +
1691682792.5003467-CDS-L-elsbetiae_contig1013:8127..82591691682792.5003467-CDS-L-elsbetiae_contig1013:8127..8259Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1013 8128..8259 +
1622815244.4848769-CDS-L-elsbetiae_contig1013:9036..91741622815244.4848769-CDS-L-elsbetiae_contig1013:9036..9174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1013 9037..9174 +
1691682792.5078516-CDS-L-elsbetiae_contig1013:9036..91741691682792.5078516-CDS-L-elsbetiae_contig1013:9036..9174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1013 9037..9174 +
1622815244.4977858-CDS-L-elsbetiae_contig1013:9563..96111622815244.4977858-CDS-L-elsbetiae_contig1013:9563..9611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1013 9564..9611 +
1691682792.5154812-CDS-L-elsbetiae_contig1013:9563..96111691682792.5154812-CDS-L-elsbetiae_contig1013:9563..9611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1013 9564..9611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1013.178.1

>prot_L-elsbetiae_contig1013.178.1 ID=prot_L-elsbetiae_contig1013.178.1|Name=mRNA_L-elsbetiae_contig1013.178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
CDPGPRLSFSTARKNSSTRTTHAPERSHVVAVLPGRRRRSQQSRRETESM
ASTAVTDESSQAVPVPEPTTWYDDSVERISNPAAYARKNAPEQAPTPELQ
EEISLTAPGGEAKLQVHMLKERPFWSKVSLFWTFRLADVEGDSTEGVVVG
LVFDTWTGSIEISENAVIKVDEIQRPIMGGSWTTKTDFGALEIKIVPYWT
GECTMYELWHEGKEVYTFFA*
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mRNA from alignment at L-elsbetiae_contig1013:7079..9611+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1013.178.1 ID=mRNA_L-elsbetiae_contig1013.178.1|Name=mRNA_L-elsbetiae_contig1013.178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2533bp|location=Sequence derived from alignment at L-elsbetiae_contig1013:7079..9611+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGACCCAGGCCCACGGCTTTCATTCTCTACGGCACGGAAGAACTCAAG
CACTCGCACTACGCACGCCCCGGAGAGAAGCCACGTGGTTGCTGTTTTAC
CAGGAAGAAGAAGAAGAAGTCAACAATCCAGAAGAGAGACAGAGAGTATG
GCCTCCACAGCGGTGACTGACGAGTCGAGCCAAGCGGTTCCGGTGCCGGA
GCCAACTACTTGGTACGACGATTCCGTCGAGCGTATCTCCAACCCAGCAG
CGTATGCCAGGAAGAACGCTCCTGAGCAGGCGCCGACGCCTGAGTTGCAA
GAGGAAATCTCCCTTACCGCTCCTGGGGGGGAAGCGAAGCTCCAGGTAAG
AAGAAGGTAGCTTAGCGTCGTACCGGAGACAGACAGACCCCAGACGGCGT
CTTTGAGGGTGCCTCTGGTCTGCACGGCAGCCTAGCTACGTGCCCGGCCC
TTTTGTGTAATCAAGAAGACATCTGCTGCAGTCCTCGAGACAGGCGCTGT
AAATGCAACAGCAGGCCCTTGGGCTTTAGAGTTTTATCGTTCACCTGCTG
AATGTTCTGCTGCCTTCTGTTTACAATTGTAGGTAACAAACCTTTGGGAA
ATCGAGAGATTCAAACCGATTCCACAAGATTCAAACCGATTCCTCGCGAG
GCGGGATTTAAACGACACGTTTGCATCCCTGTGTACCCCTGTACATCCTG
GGCTTCACGCGCTTCGGCACGAAGGAGCTGACGATTTGCCATATGCACCA
TGCAATACGGCGCTCAGCCTCCTTCGCCCTTGCTCCCTCGCCGATACATT
TGCCCGCAAATGTGAGGTTAGGTTCGACCATATATTGTACAAGAGTCGAG
ATAAGACTCCGGAGTAGTTACCACTTGGGAGTTCCTGCTTGGGGTGTCTT
TGATTCTCTCTCCAAGAACTCTTCCTGCTAGGGAGGCTATTTCTGTGACT
TCCTTGTTCGGCCCTAGAACTAACTCCCTCTTGTCTCTTCTTTTACCTCC
TCCCCTCTACGTCTCTGCGGTCGGGCTGCTTTGTGTCCCGTTTTTCCAGG
TTCACATGCTGAAGGAGCGGCCGTTCTGGAGTAAGGTCTCCCTATTCTGG
ACCTTCCGGTTAGCCGATGTCGAGGGAGACAGCACCGAGGGGGTGGTGGT
GGGCCTTGTCTTCGATACCTGGACAGGATCTGTGAGTTTTCGACGATGAA
CAACGAAAATGGCATTCCTTCCCATAGTCGGCTGGTATGTACCTACCCCG
GATTCAACCAGCGGCGATTGGAGCTGGTTTGGTTTGCCGAGGGGGCGGTG
GGAAAGTTTGTATGGTCTTGAAGTCCTCTCCTTCATGTTAAAAGCAGCAG
CAGAAACGCCCCCGAAACGGCGGCGCCCCGCCTGTGCTGACCGGCGTATG
TTCGTACACCTGGAATCGCTACCTTGTCTACATGACCCACCTTCGCGGAA
GATAAGAGAGGCGGACCCTCCCTCACGAGCTCACGAGCAGAAGCAAAACT
AAGTCGGAACATTTTTTAGTTTTAAGTTTTGTATTAACACTGAAAGCGTT
TTTTGTATACCCGCTGGTAGGACATATATACACTGCATGTATGCATATAG
CGACGAAAGTACCCAAAGGTGAGTTTGGTGTTCATTAGTATACCCTTTCT
CCAGCCCATCCACTCCCACGCACGTCGTGCGCCAATTTACCCCAACGCCA
ACGCTCTAAATAACACGCATTTTAGTCGGAGATGCTGCTGTGGTTCTGCC
GGGCGCGTCGCTACCCTGCCGTGTTATATACATACATCTATGTACATATG
CAGAATAGTGGAGCCTTTCTTGACGTGCCGGGTGGTGCTGCGGAAGATGA
AGCTCCCGACCTCTTAAGCCCGTTTGGGCATGCCCTGTGAGCCAGGTTCG
TACATTGACCGCGCTTATTTTTCTCCCTGCTGCTGTTGCCGCCGAAACAC
ACCTACAGATCGAGATTAGCGAGAACGCGGTCATCAAGGTGGACGAAATC
CAGAGGCCGATTATGGGGGGCTCGTGGACAACGAAGACGGACTTCGGCGC
ATTGGAGATCAAGATCGTACCATACTGGACAGGCGAGTGCACCATGGTGT
GGAACCGGGCTGTTGGTAACCGGTACAGGCGCTAGCTCCATCCGCTCGCA
TGGCGTTTTTGAGGTCCGGGGGGGAGGCATGGAGAGAACGAAAGCGAGAG
AGACAACCGAGGTTTTTCTGAGGAGACTCGCTGCGCCTCGTTACTAAATA
GTGAAGCGCGGGGATACACTATGGTTGTACATACAGCTGTAGGGCTGGTT
GTTGCCGGTGCGTCCGTGCGGGTAGCAGTGCAGGCCACGCCGATTCTGGT
GCTTGTGCTATTCACGGAACAAAATCGTGTTTGATGCATGCCATGTTTTC
ACCCTGGCCTCCGGACGAGGCTGGCGTCATCGCTTATGTTGATCGGTTCG
TTCTCTTGTCTGTCCGCCACGCCGCAGGCTACCAGTACGAGCTTTGGCAC
GAGGGGAAGGAGGTCTACACCTTCTTTGCATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1013:7079..9611+

>mRNA_L-elsbetiae_contig1013.178.1 ID=mRNA_L-elsbetiae_contig1013.178.1|Name=mRNA_L-elsbetiae_contig1013.178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig1013:7079..9611+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGACCCAGGCCCACGGCTTTCATTCTCTACGGCACGGAAGAACTCAAG
CACTCGCACTACGCACGCCCCGGAGAGAAGCCACGTGGTTGCTGTTTTAC
CAGGAAGAAGAAGAAGAAGTCAACAATCCAGAAGAGAGACAGAGAGTATG
GCCTCCACAGCGGTGACTGACGAGTCGAGCCAAGCGGTTCCGGTGCCGGA
GCCAACTACTTGGTACGACGATTCCGTCGAGCGTATCTCCAACCCAGCAG
CGTATGCCAGGAAGAACGCTCCTGAGCAGGCGCCGACGCCTGAGTTGCAA
GAGGAAATCTCCCTTACCGCTCCTGGGGGGGAAGCGAAGCTCCAGTGTGA
CCCAGGCCCACGGCTTTCATTCTCTACGGCACGGAAGAACTCAAGCACTC
GCACTACGCACGCCCCGGAGAGAAGCCACGTGGTTGCTGTTTTACCAGGA
AGAAGAAGAAGAAGTCAACAATCCAGAAGAGAGACAGAGAGTATGGCCTC
CACAGCGGTGACTGACGAGTCGAGCCAAGCGGTTCCGGTGCCGGAGCCAA
CTACTTGGTACGACGATTCCGTCGAGCGTATCTCCAACCCAGCAGCGTAT
GCCAGGAAGAACGCTCCTGAGCAGGCGCCGACGCCTGAGTTGCAAGAGGA
AATCTCCCTTACCGCTCCTGGGGGGGAAGCGAAGCTCCAGGTTCACATGC
TGAAGGAGCGGCCGTTCTGGAGTAAGGTCTCCCTATTCTGGACCTTCCGG
TTAGCCGATGTCGAGGGAGACAGCACCGAGGGGGTGGTGGTGGGCCTTGT
CTTCGATACCTGGACAGGATCTGTTCACATGCTGAAGGAGCGGCCGTTCT
GGAGTAAGGTCTCCCTATTCTGGACCTTCCGGTTAGCCGATGTCGAGGGA
GACAGCACCGAGGGGGTGGTGGTGGGCCTTGTCTTCGATACCTGGACAGG
ATCTATCGAGATTAGCGAGAACGCGGTCATCAAGGTGGACGAAATCCAGA
GGCCGATTATGGGGGGCTCGTGGACAACGAAGACGGACTTCGGCGCATTG
GAGATCAAGATCGTACCATACTGGACAGGCGAGTGCACCATGATCGAGAT
TAGCGAGAACGCGGTCATCAAGGTGGACGAAATCCAGAGGCCGATTATGG
GGGGCTCGTGGACAACGAAGACGGACTTCGGCGCATTGGAGATCAAGATC
GTACCATACTGGACAGGCGAGTGCACCATGTACGAGCTTTGGCACGAGGG
GAAGGAGGTCTACACCTTCTTTGCATGATACGAGCTTTGGCACGAGGGGA
AGGAGGTCTACACCTTCTTTGCATGA
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