mRNA_L-elsbetiae_contig8648.17683.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8648.17683.1
Unique NamemRNA_L-elsbetiae_contig8648.17683.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8648.17683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8648contigL-elsbetiae_contig8648:242..847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size606
Cds size483
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816946.4841547-CDS-L-elsbetiae_contig8648:241..7241622816946.4841547-CDS-L-elsbetiae_contig8648:241..724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8648 242..724 +
1691683932.534311-CDS-L-elsbetiae_contig8648:241..7241691683932.534311-CDS-L-elsbetiae_contig8648:241..724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8648 242..724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816946.496423-UTR-L-elsbetiae_contig8648:724..8471622816946.496423-UTR-L-elsbetiae_contig8648:724..847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8648 725..847 +
1691683932.5441222-UTR-L-elsbetiae_contig8648:724..8471691683932.5441222-UTR-L-elsbetiae_contig8648:724..847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8648 725..847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8648.17683.1prot_L-elsbetiae_contig8648.17683.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8648 242..724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8648.17683.1

>prot_L-elsbetiae_contig8648.17683.1 ID=prot_L-elsbetiae_contig8648.17683.1|Name=mRNA_L-elsbetiae_contig8648.17683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
VPLPPLRSPCPLPLLPPPPHSPWDFPPRHIHGVSPRALLLALLLLGRTSR
LPVRRNQTRAAAGRTSGAGSGRKCGGAGGVGIARCTPSGGVAPPGRRTNA
SVKKIVVGVGEVGVINRVRRRPRPPSIRAGGGTRASWGVGLIAGGLGRVR
LAAVDRRFIE*
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mRNA from alignment at L-elsbetiae_contig8648:242..847+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8648.17683.1 ID=mRNA_L-elsbetiae_contig8648.17683.1|Name=mRNA_L-elsbetiae_contig8648.17683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig8648:242..847+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCCGTTGCCTCCTCTTCGATCTCCTTGTCCTCTTCCTCTTCTTCCTCC
TCCTCCTCACAGCCCCTGGGATTTTCCTCCTCGCCACATTCATGGGGTGT
CCCCTCGTGCCCTCCTTCTGGCACTGTTGTTGCTGGGTCGGACGAGCCGA
CTGCCTGTTCGGCGAAACCAAACCCGGGCTGCGGCCGGACGAACCAGCGG
GGCGGGTAGCGGGCGAAAATGCGGGGGAGCCGGGGGAGTGGGCATCGCCC
GTTGCACTCCATCCGGGGGGGTTGCGCCCCCTGGAAGGCGTACGAACGCC
TCCGTCAAGAAAATAGTCGTCGGAGTCGGAGAGGTCGGCGTAATTAACAG
GGTTCGACGACGCCCTCGTCCCCCGTCTATTCGTGCGGGCGGGGGTACTC
GCGCTTCTTGGGGTGTTGGGTTGATCGCCGGAGGTCTCGGTCGTGTCCGA
CTCGCCGCTGTGGATCGAAGATTCATCGAATGACCGCGGGCGAGCCGCAG
CCCCGCCTCGCCCACCTCGGCCCGCCACAGCAACGGCGGCGGCCCGGCTC
CCACCTGCCGCTGTCGGGTTCCTCTTCGACGCTAAGTTGGAGGGCGTCGT
GCCGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8648:242..847+

>mRNA_L-elsbetiae_contig8648.17683.1 ID=mRNA_L-elsbetiae_contig8648.17683.1|Name=mRNA_L-elsbetiae_contig8648.17683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig8648:242..847+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCCGTTGCCTCCTCTTCGATCTCCTTGTCCTCTTCCTCTTCTTCCTCC
TCCTCCTCACAGCCCCTGGGATTTTCCTCCTCGCCACATTCATGGGGTGT
CCCCTCGTGCCCTCCTTCTGGCACTGTTGTTGCTGGGTCGGACGAGCCGA
CTGCCTGTTCGGCGAAACCAAACCCGGGCTGCGGCCGGACGAACCAGCGG
GGCGGGTAGCGGGCGAAAATGCGGGGGAGCCGGGGGAGTGGGCATCGCCC
GTTGCACTCCATCCGGGGGGGTTGCGCCCCCTGGAAGGCGTACGAACGCC
TCCGTCAAGAAAATAGTCGTCGGAGTCGGAGAGGTCGGCGTAATTAACAG
GGTTCGACGACGCCCTCGTCCCCCGTCTATTCGTGCGGGCGGGGGTACTC
GCGCTTCTTGGGGTGTTGGGTTGATCGCCGGAGGTCTCGGTCGTGTCCGA
CTCGCCGCTGTGGATCGAAGATTCATCGAATGAGTTCCGTTGCCTCCTCT
TCGATCTCCTTGTCCTCTTCCTCTTCTTCCTCCTCCTCCTCACAGCCCCT
GGGATTTTCCTCCTCGCCACATTCATGGGGTGTCCCCTCGTGCCCTCCTT
CTGGCACTGTTGTTGCTGGGTCGGACGAGCCGACTGCCTGTTCGGCGAAA
CCAAACCCGGGCTGCGGCCGGACGAACCAGCGGGGCGGGTAGCGGGCGAA
AATGCGGGGGAGCCGGGGGAGTGGGCATCGCCCGTTGCACTCCATCCGGG
GGGGTTGCGCCCCCTGGAAGGCGTACGAACGCCTCCGTCAAGAAAATAGT
CGTCGGAGTCGGAGAGGTCGGCGTAATTAACAGGGTTCGACGACGCCCTC
GTCCCCCGTCTATTCGTGCGGGCGGGGGTACTCGCGCTTCTTGGGGTGTT
GGGTTGATCGCCGGAGGTCTCGGTCGTGTCCGACTCGCCGCTGTGGATCG
AAGATTCATCGAATGA
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