mRNA_L-elsbetiae_contig8647.17682.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig8647.17682.1
Unique Name	mRNA_L-elsbetiae_contig8647.17682.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig8647.17682.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.010e-28
Identity = 58/103 (56.31%), Postives = 71/103 (68.93%), Query Frame = 1

Query:    1 MRKKSEGPGEMVSAFQDERHGFDLSLTDEQLAAVNLVREAKGAAKLERSPGLRFLVFGKNKGGFWGFEQFKEQXXXXXXXXETIEPELQAAGKQAASFEHERQ 309
            +RKK+EGPGEMVSAFQDERHGF L LTD+ L AVN  R+ KG   L RSPGLRFL +GKNK G+WG+++FKEQ        +  EP++Q   +   S  H RQ
Sbjct:  637 LRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQMEDALDVLDVFEPDMQVVVEIDHSSGHTRQ 739

[Close]

BLAST of mRNA_L-elsbetiae_contig8647.17682.1 vs. uniprot
Match: A0A6H5JUX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 5.030e-28
Identity = 65/103 (63.11%), Postives = 77/103 (74.76%), Query Frame = 1

Query:    1 MRKKSEGPGEMVSAFQDERHGFDLSLTDEQLAAVNLVREAKGAAKLERSPGLRFLVFGKNKGGFWGFEQFKEQXXXXXXXXETIEPELQAAGKQAASFEHERQ 309
            +RKK+EGPGEMVSAFQDERHGF L LTD+ L AVN  R+ KG   L RSPGLRFL +GKNK G+WG+++FKEQ XXXXXXX   EP++Q   +   S  H RQ
Sbjct:  486 LRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSGHTRQ 588

[Close]

BLAST of mRNA_L-elsbetiae_contig8647.17682.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.350e-27
Identity = 61/89 (68.54%), Postives = 72/89 (80.90%), Query Frame = 1

Query:    1 MRKKSEGPGEMVSAFQDERHGFDLSLTDEQLAAVNLVREAKGAAKLERSPGLRFLVFGKNKGGFWGFEQFKEQXXXXXXXXETIEPELQ 267
            +RKK+EGPGEMVSAFQDERHGF L LTD+ L AVN  R+ KG   L RSPGLRFL +GKNK G+WG+++FKEQ XXXXXXX   EP++Q
Sbjct:  666 LRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQ 754

[Close]

BLAST of mRNA_L-elsbetiae_contig8647.17682.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.390e-27
Identity = 61/89 (68.54%), Postives = 72/89 (80.90%), Query Frame = 1

Query:    1 MRKKSEGPGEMVSAFQDERHGFDLSLTDEQLAAVNLVREAKGAAKLERSPGLRFLVFGKNKGGFWGFEQFKEQXXXXXXXXETIEPELQ 267
            +RKK+EGPGEMVSAFQDERHGF L LTD+ L AVN  R+ KG   L RSPGLRFL +GKNK G+WG+++FKEQ XXXXXXX   EP++Q
Sbjct:  604 LRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQ 692

[Close]

BLAST of mRNA_L-elsbetiae_contig8647.17682.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.470e-26
Identity = 60/89 (67.42%), Postives = 71/89 (79.78%), Query Frame = 1

Query:    1 MRKKSEGPGEMVSAFQDERHGFDLSLTDEQLAAVNLVREAKGAAKLERSPGLRFLVFGKNKGGFWGFEQFKEQXXXXXXXXETIEPELQ 267
            +RKK+EGPGEMVS FQDERHGF L LTD+ L AVN  R+ KG   L RSPGLRFL +GKNK G+WG+++FKEQ XXXXXXX   EP++Q
Sbjct:  318 IRKKTEGPGEMVSGFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLRFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQ 406

[Close]

BLAST of mRNA_L-elsbetiae_contig8647.17682.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 7.450e-26
Identity = 63/101 (62.38%), Postives = 74/101 (73.27%), Query Frame = 1

Query:    7 KKSEGPGEMVSAFQDERHGFDLSLTDEQLAAVNLVREAKGAAKLERSPGLRFLVFGKNKGGFWGFEQFKEQXXXXXXXXETIEPELQAAGKQAASFEHERQ 309
            KK+EGPGEMVSAFQDERHGF L LTD+ L AVN  R+ KG   L RSPGL FL +GKNK G+WG+++FKEQ XXXXXXX   EP++Q   +   S  H RQ
Sbjct:  533 KKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEVLTRSPGLWFLQYGKNKDGYWGYDEFKEQIXXXXXXXXVFEPDMQVVVEIDHSSGHTRQ 633

[Close]

BLAST of mRNA_L-elsbetiae_contig8647.17682.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.390e-25
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 1

Query:    1 MRKKSEGPGEMVSAFQDERHGFDLSLTDEQLAAVNLVREAKGAAK--LERSPGLRFLVFGKNKGGFWGFEQFKEQXXXXXXXXETIEPELQAAGKQAASFEHERQ 309
            +RKK+EGPGEMVS FQDERHGF L ++D  LAAVN  R+ +G  K  L RSPGLRFL +GK K G+WG++QF+EQ        E I+P++Q   +   S  H +Q
Sbjct:  295 LRKKTEGPGEMVSGFQDERHGFGLPISDADLAAVNAKRDEEGNGKKPLTRSPGLRFLEYGKGKDGYWGYDQFEEQVEDVMDVLEHIDPDMQIVFEVDHSSGHGKQ 399

[Close]

BLAST of mRNA_L-elsbetiae_contig8647.17682.1 vs. uniprot
Match: A0A6H5KP29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP29_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 6.220e-25
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 1

Query:    1 MRKKSEGPGEMVSAFQDERHGFDLSLTDEQLAAVNLVREAKGAAKLERSPGLRFLVFGKNKGGFWGFEQFKEQ 219
            +RK++EGPGEMVSAFQDERHGF L LTD+ L AVN  R+ KG   L RSP LRFL  GKNK G+WG+++FKEQ
Sbjct:  230 IRKRNEGPGEMVSAFQDERHGFGLPLTDDVLQAVNARRKEKGKEDLTRSPDLRFLQHGKNKDGYWGYDEFKEQ 302

[Close]

BLAST of mRNA_L-elsbetiae_contig8647.17682.1 vs. uniprot
Match: A0A6H5KQB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB9_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.930e-24
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 1

Query:    1 MRKKSEGPGEMVSAFQDERHGFDLSLTDEQLAAVNLVREAKGAAK--LERSPGLRFLVFGKNKGGFWGFEQFKEQXXXXXXXXETIEPELQAAGKQAASFEHERQ 309
            +RKK+EGPGEMVS FQDERHGF L ++D  LAAVN  R+ +G  K  L RSPGLRFL +GK K G+WG++ F+EQ        E I+P++Q   +   S  H +Q
Sbjct:  140 LRKKTEGPGEMVSGFQDERHGFGLPISDADLAAVNAKRDEEGNGKKTLTRSPGLRFLEYGKGKDGYWGYDLFEEQVEDVVDVLEHIDPDMQIVFEVDHSSGHGKQ 244

[Close]

BLAST of mRNA_L-elsbetiae_contig8647.17682.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.000e-23
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = 1

Query:    1 MRKKSEGPGEMVSAFQDERHGFDLSLTDEQLAAVNLVREAKGAAK--LERSPGLRFLVFGKNKGGFWGFEQFKEQXXXXXXXXETIEPELQ 267
            +RK++EGPGEMVS FQDERHGF L ++D  LAAVN  R+ +G  K  L RSPGLRFL +GK K G WG++QF+EQ        E I+P+ Q
Sbjct:  580 LRKRTEGPGEMVSGFQDERHGFGLPISDADLAAVNAKRDEEGNGKKTLTRSPGLRFLEYGKGKDGCWGYDQFEEQVEDVMDVLEHIDPDKQ 670

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig8647.17682.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig8647.17682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14


Match Name	E-value	Identity	Description
A0A6H5K2T4_9PHAE	2.010e-28	56.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUX8_9PHAE	5.030e-28	63.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K7P7_9PHAE	3.350e-27	68.54	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J4M4_9PHAE	3.390e-27	68.54	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JRV8_9PHAE	1.470e-26	67.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVN6_9PHAE	7.450e-26	62.38	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KXL0_9PHAE	2.390e-25	52.38	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KP29_9PHAE	6.220e-25	67.12	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KQB9_9PHAE	1.930e-24	51.43	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L611_9PHAE	2.000e-23	56.04	Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig8647	contig	L-elsbetiae_contig8647:5495..5833 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	340
Cds size	339
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816946.4496825-CDS-L-elsbetiae_contig8647:5494..5833	1622816946.4496825-CDS-L-elsbetiae_contig8647:5494..5833	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8647 5495..5833 +
1691683932.5220861-CDS-L-elsbetiae_contig8647:5494..5833	1691683932.5220861-CDS-L-elsbetiae_contig8647:5494..5833	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8647 5495..5833 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig8647.17682.1	prot_L-elsbetiae_contig8647.17682.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig8647 5495..5833 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig8647:5495..5833+
coding sequence from alignment at L-elsbetiae_contig8647:5495..5833+

protein sequence of mRNA_L-elsbetiae_contig8647.17682.1

>prot_L-elsbetiae_contig8647.17682.1 ID=prot_L-elsbetiae_contig8647.17682.1|Name=mRNA_L-elsbetiae_contig8647.17682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MRKKSEGPGEMVSAFQDERHGFDLSLTDEQLAAVNLVREAKGAAKLERSP
GLRFLVFGKNKGGFWGFEQFKEQVEDVLDILETIEPELQAAGKQAASFEH
ERQVRGEAKGVAG

mRNA from alignment at L-elsbetiae_contig8647:5495..5833+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig8647.17682.1 ID=mRNA_L-elsbetiae_contig8647.17682.1|Name=mRNA_L-elsbetiae_contig8647.17682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=339bp|location=Sequence derived from alignment at L-elsbetiae_contig8647:5495..5833+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGAAAAAGTCGGAGGGCCCGGGCGAGATGGTTTCCGCCTTCCAGGA
TGAGCGGCACGGATTTGATTTGTCGCTCACAGACGAGCAGCTGGCTGCGG
TGAACCTGGTCCGCGAGGCGAAAGGTGCAGCCAAGCTGGAGCGCAGTCCT
GGTCTGCGCTTCCTCGTCTTTGGGAAAAACAAAGGCGGGTTCTGGGGGTT
CGAGCAGTTCAAGGAGCAGGTGGAAGATGTGCTGGACATTCTCGAGACGA
TTGAACCCGAACTGCAGGCAGCGGGAAAACAGGCTGCAAGTTTCGAACAT
GAACGGCAAGTACGGGGGGAAGCAAAAGGAGTTGCGGGA

Coding sequence (CDS) from alignment at L-elsbetiae_contig8647:5495..5833+

>mRNA_L-elsbetiae_contig8647.17682.1 ID=mRNA_L-elsbetiae_contig8647.17682.1|Name=mRNA_L-elsbetiae_contig8647.17682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig8647:5495..5833+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGAAAAAGTCGGAGGGCCCGGGCGAGATGGTTTCCGCCTTCCAGGA
TGAGCGGCACGGATTTGATTTGTCGCTCACAGACGAGCAGCTGGCTGCGG
TGAACCTGGTCCGCGAGGCGAAAGGTGCAGCCAAGCTGGAGCGCAGTCCT
GGTCTGCGCTTCCTCGTCTTTGGGAAAAACAAAGGCGGGTTCTGGGGGTT
CGAGCAGTTCAAGGAGCAGGTGGAAGATGTGCTGGACATTCTCGAGACGA
TTGAACCCGAACTGCAGGCAGCGGGAAAACAGGCTGCAAGTTTCGAACAT
GAACGGCAAGTACGGGGGGAAGCAAAAGGAGTTGCGGGAATGCGGAAAAA
GTCGGAGGGCCCGGGCGAGATGGTTTCCGCCTTCCAGGATGAGCGGCACG
GATTTGATTTGTCGCTCACAGACGAGCAGCTGGCTGCGGTGAACCTGGTC
CGCGAGGCGAAAGGTGCAGCCAAGCTGGAGCGCAGTCCTGGTCTGCGCTT
CCTCGTCTTTGGGAAAAACAAAGGCGGGTTCTGGGGGTTCGAGCAGTTCA
AGGAGCAGGTGGAAGATGTGCTGGACATTCTCGAGACGATTGAACCCGAA
CTGCAGGCAGCGGGAAAACAGGCTGCAAGTTTCGAACATGAACGGCAAGT
ACGGGGGGAAGCAAAAGGAGTTGCGGGA