mRNA_L-elsbetiae_contig8646.17681.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Match: A0A6H5JA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA60_9PHAE) HSP 1 Score: 216 bits (549), Expect = 1.010e-58 Identity = 105/192 (54.69%), Postives = 132/192 (68.75%), Query Frame = 1
Query: 499 SPLLVEQLKAHNPWRAAGSNPPPETYIAWHVRTSQGESATSFVPDLHQYIFQDQPSEAVFRLFLSVTDKAENGCPAAFPSPVGSTPIYISSNSKSMSLNCSTSIAEHGVQSGFVDLGVDDANAHTGFSKDPAKTAMNAFIDFLYLMDATAIVRSGSSFSGSVASIKGLKCDDALPGAEMPVKMMIECLPAAC 1074
SP ++ L+AHNPW +G P P+ Y+AWHVRTS GES SF PD+H YI Q S V +FLS TD AE CP F P+YISSNSKSM+ NC+ AEH V +GFVDLG+DD +AHT FSK+P TA+NAFID+LYLMD++ I+++GSSFS +VA +K LKC + E+PVK + CLP C
Sbjct: 360 SPSMIASLEAHNPWTPSGFGPRPKDYVAWHVRTSDGESEHSFNPDVHTYILHGQSSTTVVPIFLSATDAAEKMCPKMFHEDAPKMPVYISSNSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKNPNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLPHDC 551
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Match: A0A6H5L1Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z7_9PHAE) HSP 1 Score: 211 bits (536), Expect = 1.010e-58 Identity = 107/196 (54.59%), Postives = 134/196 (68.37%), Query Frame = 1
Query: 499 SPLLVEQLKAHNPWRAAGSNPPPETYIAWHVRTSQGESATSFVPDLHQYIFQDQPSEAVFRLFLSVTDKAENGCPAAFPSPVGSTPIYISSNSKSMSLNCS----TSIAEHGVQSGFVDLGVDDANAHTGFSKDPAKTAMNAFIDFLYLMDATAIVRSGSSFSGSVASIKGLKCDDALPGAEMPVKMMIECLPAAC 1074
SP ++ L+AHNPW NP P+ Y+AWH+RTS GE+ SF P +H YIF Q S +V +FLS TD AE CP F V TP+YISSNSK+M+ NC+ T AEH V GFVDLG+DD +AHT FSK+P TA+NAFID+LYLMD++ IV++GSSFS +VASIKG+ C +PVK + CLPA C
Sbjct: 177 SPAMMASLEAHNPWMTHEFNPRPKKYVAWHIRTSHGETNGSFTPHVHTYIFHRQSSTSVLPIFLSATDAAERMCPRFFDQDVPITPVYISSNSKTMARNCTVLAATLAAEHKVGPGFVDLGIDDVDAHTTFSKNPKATALNAFIDYLYLMDSSIIVQTGSSFSFTVASIKGMSCHGVAKPEGLPVKNLNVCLPADC 372
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Match: A0A6H5JUR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR5_9PHAE) HSP 1 Score: 203 bits (517), Expect = 6.320e-58 Identity = 101/189 (53.44%), Postives = 130/189 (68.78%), Query Frame = 1
Query: 508 LVEQLKAHNPWRAAGSNPPPETYIAWHVRTSQGESATSFVPDLHQYIFQDQPSEAVFRLFLSVTDKAENGCPAAFPSPVGSTPIYISSNSKSMSLNCSTSIAEHGVQSGFVDLGVDDANAHTGFSKDPAKTAMNAFIDFLYLMDATAIVRSGSSFSGSVASIKGLKCDDALPGAEMPVKMMIECLPAAC 1074
++ L A+NPW AG P Y+AWH+RTS GE+ SF PD+HQYIF Q S AVF LFLS T AE CP + + P+YISSNSK+MS NC+ AE+ +QSGFVDLG+ D++AHTG+S +P TA+NAFID+LYLMD++ IV++GSSF+ +VASIKG C A PV+ + CLP C
Sbjct: 31 IMASLDANNPWTPAGFGSRPAEYVAWHIRTSNGETKESFSPDVHQYIFNGQTSAAVFPLFLSATSFAEKACPKLYHDNIPIMPVYISSNSKTMSRNCTALAAENKIQSGFVDLGIADSDAHTGYSANPDATALNAFIDYLYLMDSSIIVQTGSSFAFTVASIKGTSCRGAPKTKGAPVRSLYICLPNDC 219
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Match: A0A6H5JS37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS37_9PHAE) HSP 1 Score: 168 bits (425), Expect = 3.310e-41 Identity = 83/193 (43.01%), Postives = 123/193 (63.73%), Query Frame = 1
Query: 499 SPLLVEQLKAHNPWRAAGSNPPP-ETYIAWHVRTSQGESATSFVPDLHQYIFQDQPSEAVFRLFLSVTDKAENGCPAAFPSPVGSTPIYISSNSKSMSLNCSTSIAEHGVQSGFVDLGVDDANAHTGFSKDPAKTAMNAFIDFLYLMDATAIVRSGSSFSGSVASIKGLKCDDALPGAEMPVKMMIECLPAAC 1074
S ++ +L+A+NPWR GS+ + YIA+ +RT++GE+A SF P +H YIF + S V + + T++A+ CPAAF + G P++ISSNS SM+ NCS A + G VD+GV +AHT FS P A+ AF+DFL+++DA +VR+ SSFSG+ +KG+ C +A EMP+ + C+PA C
Sbjct: 390 SAAMMRRLEAYNPWRVEGSSMSRFQKYIAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFAATEEAKGACPAAFNADEGDVPLFISSNSMSMARNCSAEAAGRKMLPGLVDVGVPVGDAHTTFSAHPKIAALKAFVDFLFILDAEVVVRTASSFSGTAVEMKGMNCFEAKVSVEMPISGLYVCVPAGC 582
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Match: A0A6H5KDJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ4_9PHAE) HSP 1 Score: 161 bits (408), Expect = 3.450e-41 Identity = 88/195 (45.13%), Postives = 125/195 (64.10%), Query Frame = 1
Query: 499 SPLLVEQLKAHNPWRAAGSNPPPET-YIAWHVRTSQGESATSFVPDLHQYIFQDQPSEAVFRLFLSVTDKAENGCPAAFPSPVGSTPIYISSNSKSMSLNCSTSIAEHGVQSGFVDLGVDDANAHTGFSKDPAKTAMNAFIDFLYLMDATAIVRSGSSFSGSVASIKGLKCDDALPGAEMPVKMM--IECLPAAC 1074
SP ++ ++AH PW AG +P Y AWH+RTS+GE+ SF +YIF + S+++ +F+S + +E CP+ F +P+YISSNSKS + NCS + +++ FVDLG++ +AHT FSK+P T +NAFIDFLYLMDA IVR+ SSFSG++ IK +C DA G ++PV M C+PA C
Sbjct: 120 SPTMMNSMEAHTPWVTAGDSPRAHAHYHAWHIRTSEGETERSF--SKQRYIFNNVASQSICPMFVSTREASEEACPSRFSG--NDSPVYISSNSKSTARNCSAEARKKDIETAFVDLGINAQDAHTAFSKNP-DTVVNAFIDFLYLMDADIIVRTASSFSGAIIDIKSYRCMDAYLG-KLPVFRMHLFVCVPADC 308
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Match: A0A6H5JBZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ2_9PHAE) HSP 1 Score: 122 bits (305), Expect = 2.630e-29 Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 1
Query: 754 PIYISSNSKSMSLNCSTSIAEHGVQSGFVDLGVDDANAHTGFSKDPAKTAMNAFIDFLYLMDATAIVRSGSSFSGSVASIKGLKCDDALPGAEMPVKMMIECLPAAC 1074
P + S SKSM+ NC+ AEH V +GFVDLG+DD +AHT FSK+P TA+NAFID+LYLMD++ I+++GSSFS +VA +K LKC + E+PVK + CLP C
Sbjct: 3 PPFFRSRSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKNPNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLPHDC 109
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Match: D8LBV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV4_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 1.870e-11 Identity = 37/91 (40.66%), Postives = 59/91 (64.84%), Query Frame = 1
Query: 508 LVEQLKAHNPWRAAGSNPPP-ETYIAWHVRTSQGESATSFVPDLHQYIFQDQPSEAVFRLFLSVTDKAENGCPAAFPSPVGSTPIYISSNS 777
++ L+ +NPWR GS+ + Y+A+ +RT++GE+A SF P +H YIF + S V + + T++A+ CPAAF + G P++ISSNS
Sbjct: 393 MMRSLEVYNPWRVEGSSMSRFQKYVAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFTATEEAKGVCPAAFNADEGDVPLFISSNS 483 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8646.17681.1 >prot_L-elsbetiae_contig8646.17681.1 ID=prot_L-elsbetiae_contig8646.17681.1|Name=mRNA_L-elsbetiae_contig8646.17681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp MSLNCSTSIAEHGVQSGFVDLGVDDANAHTGFSKDPAKTAMNAFIDFLYLback to top mRNA from alignment at L-elsbetiae_contig8646:3487..5557+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8646.17681.1 ID=mRNA_L-elsbetiae_contig8646.17681.1|Name=mRNA_L-elsbetiae_contig8646.17681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2071bp|location=Sequence derived from alignment at L-elsbetiae_contig8646:3487..5557+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8646:3487..5557+ >mRNA_L-elsbetiae_contig8646.17681.1 ID=mRNA_L-elsbetiae_contig8646.17681.1|Name=mRNA_L-elsbetiae_contig8646.17681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig8646:3487..5557+ (Laminarionema elsbetiae ELsaHSoW15)back to top |