mRNA_L-elsbetiae_contig8646.17681.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8646.17681.1
Unique NamemRNA_L-elsbetiae_contig8646.17681.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Match: A0A6H5JA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA60_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 1.010e-58
Identity = 105/192 (54.69%), Postives = 132/192 (68.75%), Query Frame = 1
Query:  499 SPLLVEQLKAHNPWRAAGSNPPPETYIAWHVRTSQGESATSFVPDLHQYIFQDQPSEAVFRLFLSVTDKAENGCPAAFPSPVGSTPIYISSNSKSMSLNCSTSIAEHGVQSGFVDLGVDDANAHTGFSKDPAKTAMNAFIDFLYLMDATAIVRSGSSFSGSVASIKGLKCDDALPGAEMPVKMMIECLPAAC 1074
            SP ++  L+AHNPW  +G  P P+ Y+AWHVRTS GES  SF PD+H YI   Q S  V  +FLS TD AE  CP  F       P+YISSNSKSM+ NC+   AEH V +GFVDLG+DD +AHT FSK+P  TA+NAFID+LYLMD++ I+++GSSFS +VA +K LKC +     E+PVK +  CLP  C
Sbjct:  360 SPSMIASLEAHNPWTPSGFGPRPKDYVAWHVRTSDGESEHSFNPDVHTYILHGQSSTTVVPIFLSATDAAEKMCPKMFHEDAPKMPVYISSNSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKNPNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLPHDC 551          
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Match: A0A6H5L1Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z7_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 1.010e-58
Identity = 107/196 (54.59%), Postives = 134/196 (68.37%), Query Frame = 1
Query:  499 SPLLVEQLKAHNPWRAAGSNPPPETYIAWHVRTSQGESATSFVPDLHQYIFQDQPSEAVFRLFLSVTDKAENGCPAAFPSPVGSTPIYISSNSKSMSLNCS----TSIAEHGVQSGFVDLGVDDANAHTGFSKDPAKTAMNAFIDFLYLMDATAIVRSGSSFSGSVASIKGLKCDDALPGAEMPVKMMIECLPAAC 1074
            SP ++  L+AHNPW     NP P+ Y+AWH+RTS GE+  SF P +H YIF  Q S +V  +FLS TD AE  CP  F   V  TP+YISSNSK+M+ NC+    T  AEH V  GFVDLG+DD +AHT FSK+P  TA+NAFID+LYLMD++ IV++GSSFS +VASIKG+ C        +PVK +  CLPA C
Sbjct:  177 SPAMMASLEAHNPWMTHEFNPRPKKYVAWHIRTSHGETNGSFTPHVHTYIFHRQSSTSVLPIFLSATDAAERMCPRFFDQDVPITPVYISSNSKTMARNCTVLAATLAAEHKVGPGFVDLGIDDVDAHTTFSKNPKATALNAFIDYLYLMDSSIIVQTGSSFSFTVASIKGMSCHGVAKPEGLPVKNLNVCLPADC 372          
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Match: A0A6H5JUR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR5_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 6.320e-58
Identity = 101/189 (53.44%), Postives = 130/189 (68.78%), Query Frame = 1
Query:  508 LVEQLKAHNPWRAAGSNPPPETYIAWHVRTSQGESATSFVPDLHQYIFQDQPSEAVFRLFLSVTDKAENGCPAAFPSPVGSTPIYISSNSKSMSLNCSTSIAEHGVQSGFVDLGVDDANAHTGFSKDPAKTAMNAFIDFLYLMDATAIVRSGSSFSGSVASIKGLKCDDALPGAEMPVKMMIECLPAAC 1074
            ++  L A+NPW  AG    P  Y+AWH+RTS GE+  SF PD+HQYIF  Q S AVF LFLS T  AE  CP  +   +   P+YISSNSK+MS NC+   AE+ +QSGFVDLG+ D++AHTG+S +P  TA+NAFID+LYLMD++ IV++GSSF+ +VASIKG  C  A      PV+ +  CLP  C
Sbjct:   31 IMASLDANNPWTPAGFGSRPAEYVAWHIRTSNGETKESFSPDVHQYIFNGQTSAAVFPLFLSATSFAEKACPKLYHDNIPIMPVYISSNSKTMSRNCTALAAENKIQSGFVDLGIADSDAHTGYSANPDATALNAFIDYLYLMDSSIIVQTGSSFAFTVASIKGTSCRGAPKTKGAPVRSLYICLPNDC 219          
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Match: A0A6H5JS37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS37_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 3.310e-41
Identity = 83/193 (43.01%), Postives = 123/193 (63.73%), Query Frame = 1
Query:  499 SPLLVEQLKAHNPWRAAGSNPPP-ETYIAWHVRTSQGESATSFVPDLHQYIFQDQPSEAVFRLFLSVTDKAENGCPAAFPSPVGSTPIYISSNSKSMSLNCSTSIAEHGVQSGFVDLGVDDANAHTGFSKDPAKTAMNAFIDFLYLMDATAIVRSGSSFSGSVASIKGLKCDDALPGAEMPVKMMIECLPAAC 1074
            S  ++ +L+A+NPWR  GS+    + YIA+ +RT++GE+A SF P +H YIF +  S  V   + + T++A+  CPAAF +  G  P++ISSNS SM+ NCS   A   +  G VD+GV   +AHT FS  P   A+ AF+DFL+++DA  +VR+ SSFSG+   +KG+ C +A    EMP+  +  C+PA C
Sbjct:  390 SAAMMRRLEAYNPWRVEGSSMSRFQKYIAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFAATEEAKGACPAAFNADEGDVPLFISSNSMSMARNCSAEAAGRKMLPGLVDVGVPVGDAHTTFSAHPKIAALKAFVDFLFILDAEVVVRTASSFSGTAVEMKGMNCFEAKVSVEMPISGLYVCVPAGC 582          
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Match: A0A6H5KDJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ4_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.450e-41
Identity = 88/195 (45.13%), Postives = 125/195 (64.10%), Query Frame = 1
Query:  499 SPLLVEQLKAHNPWRAAGSNPPPET-YIAWHVRTSQGESATSFVPDLHQYIFQDQPSEAVFRLFLSVTDKAENGCPAAFPSPVGSTPIYISSNSKSMSLNCSTSIAEHGVQSGFVDLGVDDANAHTGFSKDPAKTAMNAFIDFLYLMDATAIVRSGSSFSGSVASIKGLKCDDALPGAEMPVKMM--IECLPAAC 1074
            SP ++  ++AH PW  AG +P     Y AWH+RTS+GE+  SF     +YIF +  S+++  +F+S  + +E  CP+ F      +P+YISSNSKS + NCS    +  +++ FVDLG++  +AHT FSK+P  T +NAFIDFLYLMDA  IVR+ SSFSG++  IK  +C DA  G ++PV  M    C+PA C
Sbjct:  120 SPTMMNSMEAHTPWVTAGDSPRAHAHYHAWHIRTSEGETERSF--SKQRYIFNNVASQSICPMFVSTREASEEACPSRFSG--NDSPVYISSNSKSTARNCSAEARKKDIETAFVDLGINAQDAHTAFSKNP-DTVVNAFIDFLYLMDADIIVRTASSFSGAIIDIKSYRCMDAYLG-KLPVFRMHLFVCVPADC 308          
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Match: A0A6H5JBZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ2_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.630e-29
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  754 PIYISSNSKSMSLNCSTSIAEHGVQSGFVDLGVDDANAHTGFSKDPAKTAMNAFIDFLYLMDATAIVRSGSSFSGSVASIKGLKCDDALPGAEMPVKMMIECLPAAC 1074
            P +  S SKSM+ NC+   AEH V +GFVDLG+DD +AHT FSK+P  TA+NAFID+LYLMD++ I+++GSSFS +VA +K LKC +     E+PVK +  CLP  C
Sbjct:    3 PPFFRSRSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKNPNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLPHDC 109          
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Match: D8LBV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV4_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.870e-11
Identity = 37/91 (40.66%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  508 LVEQLKAHNPWRAAGSNPPP-ETYIAWHVRTSQGESATSFVPDLHQYIFQDQPSEAVFRLFLSVTDKAENGCPAAFPSPVGSTPIYISSNS 777
            ++  L+ +NPWR  GS+    + Y+A+ +RT++GE+A SF P +H YIF +  S  V   + + T++A+  CPAAF +  G  P++ISSNS
Sbjct:  393 MMRSLEVYNPWRVEGSSMSRFQKYVAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFTATEEAKGVCPAAFNADEGDVPLFISSNS 483          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8646.17681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JA60_9PHAE1.010e-5854.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1Z7_9PHAE1.010e-5854.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUR5_9PHAE6.320e-5853.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS37_9PHAE3.310e-4143.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ4_9PHAE3.450e-4145.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBZ2_9PHAE2.630e-2955.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBV4_ECTSI1.870e-1140.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8646contigL-elsbetiae_contig8646:3487..5557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_000870.3
Exons3
Model size1893
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8646.17681.1prot_L-elsbetiae_contig8646.17681.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8646 4448..4741 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816946.3727138-UTR-L-elsbetiae_contig8646:3486..37901622816946.3727138-UTR-L-elsbetiae_contig8646:3486..3790Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8646 3487..3790 +
1691683932.4587052-UTR-L-elsbetiae_contig8646:3486..37901691683932.4587052-UTR-L-elsbetiae_contig8646:3486..3790Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8646 3487..3790 +
1622816946.3832595-UTR-L-elsbetiae_contig8646:3801..42731622816946.3832595-UTR-L-elsbetiae_contig8646:3801..4273Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8646 3802..4273 +
1691683932.4759452-UTR-L-elsbetiae_contig8646:3801..42731691683932.4759452-UTR-L-elsbetiae_contig8646:3801..4273Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8646 3802..4273 +
1622816946.3943799-UTR-L-elsbetiae_contig8646:4440..44471622816946.3943799-UTR-L-elsbetiae_contig8646:4440..4447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8646 4441..4447 +
1691683932.4875486-UTR-L-elsbetiae_contig8646:4440..44471691683932.4875486-UTR-L-elsbetiae_contig8646:4440..4447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8646 4441..4447 +
1622816946.4197297-UTR-L-elsbetiae_contig8646:4741..55571622816946.4197297-UTR-L-elsbetiae_contig8646:4741..5557Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8646 4742..5557 +
1691683932.5103264-UTR-L-elsbetiae_contig8646:4741..55571691683932.5103264-UTR-L-elsbetiae_contig8646:4741..5557Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8646 4742..5557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816946.408899-CDS-L-elsbetiae_contig8646:4447..47411622816946.408899-CDS-L-elsbetiae_contig8646:4447..4741Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8646 4448..4741 +
1691683932.5002122-CDS-L-elsbetiae_contig8646:4447..47411691683932.5002122-CDS-L-elsbetiae_contig8646:4447..4741Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8646 4448..4741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8646.17681.1

>prot_L-elsbetiae_contig8646.17681.1 ID=prot_L-elsbetiae_contig8646.17681.1|Name=mRNA_L-elsbetiae_contig8646.17681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MSLNCSTSIAEHGVQSGFVDLGVDDANAHTGFSKDPAKTAMNAFIDFLYL
MDATAIVRSGSSFSGSVASIKGLKCDDALPGAEMPVKMMIECLPAAC*
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mRNA from alignment at L-elsbetiae_contig8646:3487..5557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8646.17681.1 ID=mRNA_L-elsbetiae_contig8646.17681.1|Name=mRNA_L-elsbetiae_contig8646.17681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2071bp|location=Sequence derived from alignment at L-elsbetiae_contig8646:3487..5557+ (Laminarionema elsbetiae ELsaHSoW15)
TATCGTGCGGCCCCTCCTTCGTCTTATCGGGGATGGGCTTGATCGTCCAC AGCCATGCGCGTGGAATCAGCTGTTGAGACGCAGGCAAGGTTTCAGGCGA CTGCAATGTATTTGTCGTCGATCATTTATCGACCATTTACCCGTCGACAA ATGTAGTCGTTTCTGGTGGCATCATATTTTAACTGCTCCAATAGTTGCTT TCACACCGCTATAGGTCGCGCAGATGGAGCGAATCCGGCAAGTGGCACTC CAGCACCGATGTTTTTGGTTGGGAAGAGGTTGGAAACAGGAGATAAAACC AACGGCGGGCTGTAGGGTTTTGGGCCCAAAAACTTGCAATATTCACCAAT GAGAAGGGCTGTTTTAATCTTATAGGCCCTTCCGTCTAGACGGTAGGGTA AAGGTGGTTCGAACAAGCCTCTGTCTCTGATGATATTCACATTATAGGGC AACATTAATCTGACATATCGGCAACCCCCTTCTTCCCGCTACCGGTGCAC TATGTATCTAGTCCCCTCTTAGTCGAGCAACTAAAGGCTCATAACCCTTG GCGCGCAGCCGGGTCCAACCCCCCCCCCGAGACTTACATCGCGTGGCACG TCAGGACATCTCAGGGAGAGAGTGCCACGTCGTTTGTACCCGATCTTCAT CAGTACATCTTCCAGGATCAGCCGTCCGAGGCAGTTTTCCGATTGTTCCT GTCGGTCACGGACAAGGCGGAAAATGGCTGCCCTGCTGCATTCCCGAGCC CTGTTGGCAGCACCCCAATCTACATATCATCCAACAGGTTAGTTTCTTCG GCGAGCTGTGAAGGAAATCGCGTATGTTAGTCCTGTCTTACGTTTTATGC CAGCCACACTGAAGCCGACCTGTCACATTTCCTTGATCAGCTTTGTTTGA ACCAAGCGTTGTCTGACAATGTTTTTGGTGCGTGTTCGTTGTTCGATGCT TCAGCAAGAGCATGTCGCTCAACTGTTCCACGAGTATCGCAGAACACGGC GTCCAATCCGGCTTTGTTGACCTGGGCGTGGACGACGCTAATGCTCACAC TGGCTTCAGCAAGGATCCGGCGAAAACTGCAATGAATGCATTCATCGACT TTCTGTACTTGATGGACGCCACCGCCATAGTGCGTTCAGGATCGTCGTTT TCGGGTTCGGTTGCTTCAATTAAAGGACTAAAGTGCGACGACGCACTTCC AGGGGCTGAAATGCCTGTGAAAATGATGATTGAGTGCTTGCCCGCGGCTT GCTGAATCCGTGAAAATGTATCCCAGCTCTTGAGTGGCCATGACTTGAAG AATGTGTACTGATGCCCCTCGGTCCATAGAAGGAGACACATTATCCAAAG TTCTCGTCGTGTTACCCACTTTAAGATGCACTTCGGTAGGGTTTCGCTAT CGTACTGGCGGATCACTACTTTAGAGATAACAGTGGTTGCGCGCGTTGAA AACGAACGTAACAGGCTTTGAAGGGTCAATAGTGGGGCTTTTTTTTTACA CTAAGAGAGAAACCAGGTCAACGAAGCCTTTCCAGCCACCATGGGCATAC ACTGAGTCCAAGTTCTGGCTGAGCCGAGGAAAAAAAGTAGTTTTTTTTAA TGAGGAGCCCGACCAGCGATTTTCGTTGCCGAACAGGTTCCTAGAATCTG GTGAGTCGGATCTCGTAAAAAGCAAATTGCTGTGGGGTGTCGAAACAAAA ATTGAAGTTATTGGTGTCTCTGTGTGTGAATGTGTGTGTGCGTGCGTGCG TGCGTTTTTAGACAACGTTCTAATTCCACTTCAGTGGTACTCAGTTTTCT CAAGCCAAACAACCCAGACCTATAAGGGTAAACCCGCCACGTTTTTGGCC ATGTAACCCACCGCGGTATTGGCGTAGCTTTTGACCCAACACGCGTCATC CCGTTTTCTCTCCGCTCACGCCACCAACGGACGCCAGTTTTCGCCGGTGA ACGCATGTGGGCCTCAAGGTTGTGCCCCCCCAATTTCCCCTCTCGCCGAC GCCGGGCGCGTGAGATAGCGACGACAAACCACCCCAAATCTCGGTCAAAT CGGTATTTGTCTTGTGTTTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8646:3487..5557+

>mRNA_L-elsbetiae_contig8646.17681.1 ID=mRNA_L-elsbetiae_contig8646.17681.1|Name=mRNA_L-elsbetiae_contig8646.17681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig8646:3487..5557+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCTCAACTGTTCCACGAGTATCGCAGAACACGGCGTCCAATCCGG
CTTTGTTGACCTGGGCGTGGACGACGCTAATGCTCACACTGGCTTCAGCA
AGGATCCGGCGAAAACTGCAATGAATGCATTCATCGACTTTCTGTACTTG
ATGGACGCCACCGCCATAGTGCGTTCAGGATCGTCGTTTTCGGGTTCGGT
TGCTTCAATTAAAGGACTAAAGTGCGACGACGCACTTCCAGGGGCTGAAA
TGCCTGTGAAAATGATGATTGAGTGCTTGCCCGCGGCTTGCTGAATGTCG
CTCAACTGTTCCACGAGTATCGCAGAACACGGCGTCCAATCCGGCTTTGT
TGACCTGGGCGTGGACGACGCTAATGCTCACACTGGCTTCAGCAAGGATC
CGGCGAAAACTGCAATGAATGCATTCATCGACTTTCTGTACTTGATGGAC
GCCACCGCCATAGTGCGTTCAGGATCGTCGTTTTCGGGTTCGGTTGCTTC
AATTAAAGGACTAAAGTGCGACGACGCACTTCCAGGGGCTGAAATGCCTG
TGAAAATGATGATTGAGTGCTTGCCCGCGGCTTGCTGA
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