mRNA_L-elsbetiae_contig8641.17676.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8641.17676.1
Unique NamemRNA_L-elsbetiae_contig8641.17676.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8641.17676.1 vs. uniprot
Match: D8LST7_ECTSI (Putative type II topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST7_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 3.570e-25
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 AAIAPSSALRQCDGFDVVRKGARGRGRQLMVLPGALGLGNGGSGGRIGALNIATPASPVLYVEFPE 198
            AAIAPSS LRQCDG +VV+  ARGRGRQLMVLPGALGLGNG +GG++G LN ATPA+PVLY+EFPE
Sbjct:   67 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNATPANPVLYMEFPE 132
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BLAST of mRNA_L-elsbetiae_contig8641.17676.1 vs. uniprot
Match: A0A6H5JPN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN3_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.480e-24
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 AAIAPSSALRQCDGFDVVRKGARGRGRQLMVLPGALGLGNGGSGGRIGALNIATPASPVLYVEFPE 198
            AAIAPSS LRQCDG +VV+  ARGRGRQLMVLPG LGLGNG +GG++G LN A PA+PVLYVEFPE
Sbjct:   78 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGVLGLGNGSTGGKLGTLNNAAPANPVLYVEFPE 143
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8641.17676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LST7_ECTSI3.570e-2578.79Putative type II topoisomerase n=1 Tax=Ectocarpus ... [more]
A0A6H5JPN3_9PHAE2.480e-2477.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8641contigL-elsbetiae_contig8641:301..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816946.1523387-CDS-L-elsbetiae_contig8641:300..5011622816946.1523387-CDS-L-elsbetiae_contig8641:300..501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8641 301..501 -
1691683932.2895942-CDS-L-elsbetiae_contig8641:300..5011691683932.2895942-CDS-L-elsbetiae_contig8641:300..501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8641 301..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8641.17676.1prot_L-elsbetiae_contig8641.17676.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8641 301..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8641.17676.1

>prot_L-elsbetiae_contig8641.17676.1 ID=prot_L-elsbetiae_contig8641.17676.1|Name=mRNA_L-elsbetiae_contig8641.17676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
AAIAPSSALRQCDGFDVVRKGARGRGRQLMVLPGALGLGNGGSGGRIGAL
NIATPASPVLYVEFPEV
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mRNA from alignment at L-elsbetiae_contig8641:301..501-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8641.17676.1 ID=mRNA_L-elsbetiae_contig8641.17676.1|Name=mRNA_L-elsbetiae_contig8641.17676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=201bp|location=Sequence derived from alignment at L-elsbetiae_contig8641:301..501- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCCATAGCACCTTCTTCCGCCCTGCGGCAATGCGACGGCTTCGACGT
CGTCAGGAAGGGCGCGAGGGGGCGGGGCAGGCAGCTGATGGTACTTCCCG
GAGCTCTCGGCCTTGGGAACGGGGGAAGCGGTGGAAGGATCGGGGCGCTT
AATATTGCCACGCCGGCGAGTCCCGTTTTGTACGTGGAGTTTCCCGAGGT
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8641:301..501-

>mRNA_L-elsbetiae_contig8641.17676.1 ID=mRNA_L-elsbetiae_contig8641.17676.1|Name=mRNA_L-elsbetiae_contig8641.17676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig8641:301..501- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCCATAGCACCTTCTTCCGCCCTGCGGCAATGCGACGGCTTCGACGT
CGTCAGGAAGGGCGCGAGGGGGCGGGGCAGGCAGCTGATGGTACTTCCCG
GAGCTCTCGGCCTTGGGAACGGGGGAAGCGGTGGAAGGATCGGGGCGCTT
AATATTGCCACGCCGGCGAGTCCCGTTTTGTACGTGGAGTTTCCCGAGGT
GGCGGCCATAGCACCTTCTTCCGCCCTGCGGCAATGCGACGGCTTCGACG
TCGTCAGGAAGGGCGCGAGGGGGCGGGGCAGGCAGCTGATGGTACTTCCC
GGAGCTCTCGGCCTTGGGAACGGGGGAAGCGGTGGAAGGATCGGGGCGCT
TAATATTGCCACGCCGGCGAGTCCCGTTTTGTACGTGGAGTTTCCCGAGG
TG
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