mRNA_L-elsbetiae_contig8629.17665.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8629.17665.1
Unique NamemRNA_L-elsbetiae_contig8629.17665.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8629.17665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8629contigL-elsbetiae_contig8629:5227..5559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816944.8058603-CDS-L-elsbetiae_contig8629:5226..55591622816944.8058603-CDS-L-elsbetiae_contig8629:5226..5559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8629 5227..5559 +
1691683931.2924945-CDS-L-elsbetiae_contig8629:5226..55591691683931.2924945-CDS-L-elsbetiae_contig8629:5226..5559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8629 5227..5559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8629.17665.1prot_L-elsbetiae_contig8629.17665.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8629 5227..5559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8629.17665.1

>prot_L-elsbetiae_contig8629.17665.1 ID=prot_L-elsbetiae_contig8629.17665.1|Name=mRNA_L-elsbetiae_contig8629.17665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
AVGYPSPARQACPLVPASGGGGGSGRSGGVFALIVRASGGGVVGPWARWL
GRAFARRRARAAAVARPLGARRRGPSRRGAAVSASSTAAGGRVAEERRGG
VPRDGRGSSVR
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mRNA from alignment at L-elsbetiae_contig8629:5227..5559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8629.17665.1 ID=mRNA_L-elsbetiae_contig8629.17665.1|Name=mRNA_L-elsbetiae_contig8629.17665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=333bp|location=Sequence derived from alignment at L-elsbetiae_contig8629:5227..5559+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGTCGGTTATCCGTCCCCGGCCCGGCAGGCCTGTCCCCTCGTCCCAGC
CAGCGGCGGCGGCGGTGGCAGCGGCAGAAGCGGTGGGGTATTCGCTCTCA
TCGTGCGAGCCAGCGGCGGCGGCGTCGTCGGGCCTTGGGCCCGGTGGTTG
GGCCGGGCCTTCGCTCGTCGCCGAGCGAGGGCGGCGGCTGTCGCCCGCCC
CCTCGGAGCCCGGCGTCGAGGGCCGTCGCGCCGCGGGGCTGCTGTGTCCG
CGAGCTCCACGGCGGCCGGCGGAAGGGTAGCGGAGGAACGACGGGGTGGT
GTCCCGCGCGATGGCCGCGGCAGCAGTGTCCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8629:5227..5559+

>mRNA_L-elsbetiae_contig8629.17665.1 ID=mRNA_L-elsbetiae_contig8629.17665.1|Name=mRNA_L-elsbetiae_contig8629.17665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig8629:5227..5559+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGTCGGTTATCCGTCCCCGGCCCGGCAGGCCTGTCCCCTCGTCCCAGC
CAGCGGCGGCGGCGGTGGCAGCGGCAGAAGCGGTGGGGTATTCGCTCTCA
TCGTGCGAGCCAGCGGCGGCGGCGTCGTCGGGCCTTGGGCCCGGTGGTTG
GGCCGGGCCTTCGCTCGTCGCCGAGCGAGGGCGGCGGCTGTCGCCCGCCC
CCTCGGAGCCCGGCGTCGAGGGCCGTCGCGCCGCGGGGCTGCTGTGTCCG
CGAGCTCCACGGCGGCCGGCGGAAGGGTAGCGGAGGAACGACGGGGTGGT
GTCCCGCGCGATGGCCGCGGCAGCAGTGTCCGTGCTGTCGGTTATCCGTC
CCCGGCCCGGCAGGCCTGTCCCCTCGTCCCAGCCAGCGGCGGCGGCGGTG
GCAGCGGCAGAAGCGGTGGGGTATTCGCTCTCATCGTGCGAGCCAGCGGC
GGCGGCGTCGTCGGGCCTTGGGCCCGGTGGTTGGGCCGGGCCTTCGCTCG
TCGCCGAGCGAGGGCGGCGGCTGTCGCCCGCCCCCTCGGAGCCCGGCGTC
GAGGGCCGTCGCGCCGCGGGGCTGCTGTGTCCGCGAGCTCCACGGCGGCC
GGCGGAAGGGTAGCGGAGGAACGACGGGGTGGTGTCCCGCGCGATGGCCG
CGGCAGCAGTGTCCGT
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