mRNA_L-elsbetiae_contig8628.17663.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8628.17663.1
Unique NamemRNA_L-elsbetiae_contig8628.17663.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8628.17663.1 vs. uniprot
Match: D7G1L0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L0_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.640e-40
Identity = 79/117 (67.52%), Postives = 96/117 (82.05%), Query Frame = 1 
Query:    1 EGRGRGAASGGRGARKKAAFNRSRDFVLKVRGMSHRDWQGVLEALEKAEETEESFGKAERGRDGASDGKASAHAYNSCLMHLARCARWREALAVFDRMSSKGVTPNSFCLNATLDAC 351
            EGRGRGA  G +  R  AAF RSRDFV+K+RGMS  +W+GV+  LE+AE  E  FG+AE+G  G SDG+ S+HAYNSCLMHLA+C+RWREALAVF+RM ++GVTPNSFCLNATL+AC
Sbjct:   91 EGRGRGARRGTKKGR--AAFARSRDFVVKIRGMSRWNWRGVMRELEEAETAEAKFGEAEKGTTGGSDGRVSSHAYNSCLMHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEAC 205
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BLAST of mRNA_L-elsbetiae_contig8628.17663.1 vs. uniprot
Match: A0A6H5K890_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K890_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.360e-32
Identity = 79/164 (48.17%), Postives = 95/164 (57.93%), Query Frame = 1 
Query:    1 EGRGRGAASGGRGARKKAAFNRSRDFVLKVRGMSHRDWQGVLEALEKAEETEESFGK-----------------------------------------------AERGRDGASDGKASAHAYNSCLMHLARCARWREALAVFDRMSSKGVTPNSFCLNATLDAC 351
            EGRGRGA  G    R  AAF RSRDFV+K+RGMS  +W+GV+  LE+AE  E  FG+                                               AE+G  G SDG+ S+HAYNSCLMHLA+C+RWREALAVF+RM ++GVTPNSFCLNATL+AC
Sbjct:   23 EGRGRGARRGTNKGR--AAFARSRDFVMKIRGMSRWNWRGVMRELEEAETVEAKFGEGPRSRPSGAFFVFGSSETDVFSLVSGLARAMLVQTHTRTHTCDMTLQAEKGMTGGSDGRVSSHAYNSCLMHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEAC 184
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BLAST of mRNA_L-elsbetiae_contig8628.17663.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.120e-9
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:   49 KAAFNRSRDFVLKVRGMSHRDWQGVLEALEKAEETEESFGKAERGRDGASDGKASAHAYNSCLMHLARCARWREALAVFDRMSSKGVTPNSFCLNATLDAC 351
            +A+F R++  + K+  +   DW+ +L  L+KAE  E   G+A      A     S   Y+ C+  +A+C RW EAL +  RM+  G  PNS+C+NA LDAC
Sbjct:   73 RASF-RTKLALDKIDAVRKDDWRRILVELDKAELAE---GRATTNNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDAC 169
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8628.17663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1L0_ECTSI1.640e-4067.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K890_9PHAE1.360e-3248.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0M5_ECTSI1.120e-937.62PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8628contigL-elsbetiae_contig8628:4522..6295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.6
Seed ortholog evalue7.8e-37
Seed eggNOG ortholog2880.D7G1L0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-07_001430.1
Exons2
Model size625
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816944.7100706-CDS-L-elsbetiae_contig8628:4523..49731622816944.7100706-CDS-L-elsbetiae_contig8628:4523..4973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8628 4524..4973 -
1691683931.2364354-CDS-L-elsbetiae_contig8628:4523..49731691683931.2364354-CDS-L-elsbetiae_contig8628:4523..4973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8628 4524..4973 -
1622816944.7210815-CDS-L-elsbetiae_contig8628:6124..62951622816944.7210815-CDS-L-elsbetiae_contig8628:6124..6295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8628 6125..6295 -
1691683931.2472801-CDS-L-elsbetiae_contig8628:6124..62951691683931.2472801-CDS-L-elsbetiae_contig8628:6124..6295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8628 6125..6295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8628.17663.1prot_L-elsbetiae_contig8628.17663.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8628 4524..6295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8628.17663.1

>prot_L-elsbetiae_contig8628.17663.1 ID=prot_L-elsbetiae_contig8628.17663.1|Name=mRNA_L-elsbetiae_contig8628.17663.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
EGRGRGAASGGRGARKKAAFNRSRDFVLKVRGMSHRDWQGVLEALEKAEE
TEESFGKAERGRDGASDGKASAHAYNSCLMHLARCARWREALAVFDRMSS
KGVTPNSFCLNATLDACAAAGEWRQCLSALERAKGSGLEVNEFSYNICIA
ACGSGGQWRRALALLREIEGAGRAGTATPPTIGTYGATVKALGMSGKWRE
SMELFRE
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mRNA from alignment at L-elsbetiae_contig8628:4522..6295-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8628.17663.1 ID=mRNA_L-elsbetiae_contig8628.17663.1|Name=mRNA_L-elsbetiae_contig8628.17663.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1774bp|location=Sequence derived from alignment at L-elsbetiae_contig8628:4522..6295- (Laminarionema elsbetiae ELsaHSoW15)
GAGGGCAGAGGGAGAGGTGCAGCCAGTGGGGGCAGGGGCGCCCGGAAGAA
GGCCGCCTTTAACCGCTCCCGGGACTTCGTGCTCAAGGTCAGGGGCATGT
CGCACCGGGACTGGCAGGGGGTCCTGGAAGCGCTGGAGAAGGCAGAGGAG
ACCGAGGAGAGCTTTGGGAAGGTGAGAGAGCGTGAGCGAGGTAGTGAGTG
GGGGGGGGCGTGGGAGGTCAGGCGATGGAGAGGAAGAAGGAGGGAGGGGG
GGGGTATATACCGCCCGTAGATGACACAAGAGGAGGAGACAGACACACAC
GTGAGAACATATCTGTTGAGCTTTGAAAATCATTTTTTTTTTTTTATCAC
CAGGGTGTGTGCGACTTGTGGAAGGAGTGTGTTATCTTGTGCCAACCAGT
GCTTGATACTACAGTGTAGAGTACAGTCACACACAGTATTTATTTATGGA
GCTCAAAAAATCTGTCGCACAGCAGTGTGCTTTTGTGGAGAGATTGGTAG
GGCGTGTCTTATCTTGTGTAGGTACGTGTCTTATCTTTTATCTTTTGTCA
CCTACGGTATGTGTCGCTTTCTGTGGTTGTTTGCTTGCGTGCTTGCGTGC
TTATGTGCTTGCGTGCTTGCGTGCTTGCGTGCTTGCGTGCTTGCGTGCTT
GCGTGCTTGCGTGCTTGCGTGCTTGCGTGCTTGCGTGCTTGCGTGCTTGC
GTGTGAAGTTTGTGCGCCGCGGCCCCACCTCCCACTTGGGAGGGAGCGGA
GCATGAAACAAGTACTCCTAAATAATCTCTCGTCTCCTGTCGAGTAGCAT
GCACGCTTCCGCTCGTTTGTGTTTGCTTGGCGCCTACTACATGCGCTACA
ACATGAGAAGTGTGTGTTGTATATACAACCTGGTTCCATGTTGCTGTGCC
AGCGCGTAGCGCACAATTTGTATCGTACGGAATCGGAAATTTGTTGCTGC
CGGGGGGTTGTGCTTGTCGGACTTTCGGACTGGGAGGACGGAGGGATAAA
ACTGGAACCCGTTTTTTTTGTCCCGCCCGCCTCCCTCTGCCACGTTTTTC
TCTAGTTCCACGTTTCTCTTGGTAGCGCCCTTAAGTAGAGTTGCATCCGC
AGGAGAGCGAGTGCCCTTGTGTTGGGGACGGTTTTTCCGTCTAAACAGAA
CGGAAATTAACAAAGAACCGTGAAGAAAAGGGACCCAATAAAATGACAGT
GCCCCCCGCCCCGCATCGCCACCAGCCGCCTGCCCCCCTCTCCTTTCGAC
ATGCTGCTGGCAACCCCAACCAAACCAAACGAACCACACCCGCGGCTCCC
CTTCCGACCCCCCGTTCGTCAGGCGGAGAGGGGAAGGGACGGCGCCAGCG
ACGGGAAGGCGAGCGCCCACGCGTACAACAGCTGCCTCATGCACCTCGCC
CGGTGCGCGCGCTGGCGGGAGGCACTCGCCGTGTTCGACCGCATGTCCTC
CAAGGGCGTCACGCCCAACTCCTTCTGCCTCAACGCCACCCTGGACGCCT
GCGCGGCCGCGGGTGAGTGGCGGCAGTGCCTGTCCGCCCTGGAGAGGGCC
AAGGGCTCGGGGCTCGAGGTGAACGAGTTCAGCTACAACATCTGCATCGC
GGCGTGCGGGTCCGGGGGGCAGTGGCGGAGGGCCCTGGCGCTCCTCCGAG
AGATCGAGGGGGCCGGGAGAGCGGGGACGGCGACCCCCCCGACCATCGGC
ACCTACGGGGCCACCGTCAAGGCCCTCGGGATGTCGGGGAAGTGGAGAGA
GAGCATGGAGCTTTTTCGGGAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8628:4522..6295-

>mRNA_L-elsbetiae_contig8628.17663.1 ID=mRNA_L-elsbetiae_contig8628.17663.1|Name=mRNA_L-elsbetiae_contig8628.17663.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1242bp|location=Sequence derived from alignment at L-elsbetiae_contig8628:4522..6295- (Laminarionema elsbetiae ELsaHSoW15)
GAGGGCAGAGGGAGAGGTGCAGCCAGTGGGGGCAGGGGCGCCCGGAAGAA
GGCCGCCTTTAACCGCTCCCGGGACTTCGTGCTCAAGGTCAGGGGCATGT
CGCACCGGGACTGGCAGGGGGTCCTGGAAGCGCTGGAGAAGGCAGAGGAG
ACCGAGGAGAGCTTTGGGAAGGAGGGCAGAGGGAGAGGTGCAGCCAGTGG
GGGCAGGGGCGCCCGGAAGAAGGCCGCCTTTAACCGCTCCCGGGACTTCG
TGCTCAAGGTCAGGGGCATGTCGCACCGGGACTGGCAGGGGGTCCTGGAA
GCGCTGGAGAAGGCAGAGGAGACCGAGGAGAGCTTTGGGAAGGCGGAGAG
GGGAAGGGACGGCGCCAGCGACGGGAAGGCGAGCGCCCACGCGTACAACA
GCTGCCTCATGCACCTCGCCCGGTGCGCGCGCTGGCGGGAGGCACTCGCC
GTGTTCGACCGCATGTCCTCCAAGGGCGTCACGCCCAACTCCTTCTGCCT
CAACGCCACCCTGGACGCCTGCGCGGCCGCGGGTGAGTGGCGGCAGTGCC
TGTCCGCCCTGGAGAGGGCCAAGGGCTCGGGGCTCGAGGTGAACGAGTTC
AGCTACAACATCTGCATCGCGGCGTGCGGGTCCGGGGGGCAGTGGCGGAG
GGCCCTGGCGCTCCTCCGAGAGATCGAGGGGGCCGGGAGAGCGGGGACGG
CGACCCCCCCGACCATCGGCACCTACGGGGCCACCGTCAAGGCCCTCGGG
ATGTCGGGGAAGTGGAGAGAGAGCATGGAGCTTTTTCGGGAGGCGGAGAG
GGGAAGGGACGGCGCCAGCGACGGGAAGGCGAGCGCCCACGCGTACAACA
GCTGCCTCATGCACCTCGCCCGGTGCGCGCGCTGGCGGGAGGCACTCGCC
GTGTTCGACCGCATGTCCTCCAAGGGCGTCACGCCCAACTCCTTCTGCCT
CAACGCCACCCTGGACGCCTGCGCGGCCGCGGGTGAGTGGCGGCAGTGCC
TGTCCGCCCTGGAGAGGGCCAAGGGCTCGGGGCTCGAGGTGAACGAGTTC
AGCTACAACATCTGCATCGCGGCGTGCGGGTCCGGGGGGCAGTGGCGGAG
GGCCCTGGCGCTCCTCCGAGAGATCGAGGGGGCCGGGAGAGCGGGGACGG
CGACCCCCCCGACCATCGGCACCTACGGGGCCACCGTCAAGGCCCTCGGG
ATGTCGGGGAAGTGGAGAGAGAGCATGGAGCTTTTTCGGGAG
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