mRNA_L-elsbetiae_contig862.17654.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig862.17654.1
Unique NamemRNA_L-elsbetiae_contig862.17654.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig862.17654.1 vs. uniprot
Match: A0A6H5L3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V4_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 5.040e-57
Identity = 125/223 (56.05%), Postives = 149/223 (66.82%), Query Frame = 2 
Query:    8 VMKLLLLLLALARCRSFLVVPAPLAPGTTSXXXXXXXXPGQLSSRRTQQQHRGPPSRLSSSPRMSPEDLDEARQRLIASSSYKQMVDRVDGNSPFADLDGSTGSSSSRGVKEEEVAEAPSVSFLRQAARAAVDVAVAFVPVALVVTLVKFPPPVVEALSSAAAAVKASPLEPVLEALPWEPNVVLKCVTLAVVAILLSPVADRLVVSPSIHLWAQARIRSMSS 676
            V+++L+LL ALARC SFL  P+PL PG TS                 Q +H+GPP  L S+   SPED+DE RQRL+ASS Y +MV R++GNSPF +  G  GS      KE E  E+P +  LRQ  R  VDVAV  VPV LVVT  K PPP++EAL SAA A+K SPLEPVLEALPWEP VVLK      VA+LLSPV DRLVVSP+IH W QA++RS+SS
Sbjct:    4 VLRVLVLLTALARCGSFLFAPSPLVPGITSHAEHALCR---------QARHQGPPRHLMSTAGNSPEDIDEVRQRLMASSKYDEMVGRIEGNSPFLEA-GDKGS-----AKEGE--ESPILPVLRQTVRVVVDVAVGLVPVVLVVTYAKLPPPLLEALGSAATAIKGSPLEPVLEALPWEPVVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS 209
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BLAST of mRNA_L-elsbetiae_contig862.17654.1 vs. uniprot
Match: D8LQA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA5_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 3.620e-45
Identity = 97/159 (61.01%), Postives = 115/159 (72.33%), Query Frame = 2 
Query:  200 SPEDLDEARQRLIASSSYKQMVDRVDGNSPFADLDGSTGSSSSRGVKEEEVAEAPSVSFLRQAARAAVDVAVAFVPVALVVTLVKFPPPVVEALSSAAAAVKASPLEPVLEALPWEPNVVLKCVTLAVVAILLSPVADRLVVSPSIHLWAQARIRSMSS 676
            SPED+DE RQRL+ASS+Y +MV R++GNSPF +  G  GS      KE E  E+P +  LRQ  R  VDVA+  VPV LVVT  K PPP++EAL SAA  +K SPLEPVLEALPWEP VVLK      VA+LLSPV DRLVVSP+IH W QA++RS+SS
Sbjct:    7 SPEDIDEVRQRLMASSNYNEMVGRIEGNSPFLEA-GDKGS-----AKEGE--ESPILPVLRQTVRVVVDVAITLVPVVLVVTYAKLPPPLLEALGSAATTIKGSPLEPVLEALPWEPAVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS 157
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig862.17654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3V4_9PHAE5.040e-5756.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQA5_ECTSI3.620e-4561.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig862contigL-elsbetiae_contig862:8932..12131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_005530.1
Exons3
Model size1066
Cds size669
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig862.17654.1prot_L-elsbetiae_contig862.17654.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig862 8942..11744 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816944.1620753-UTR-L-elsbetiae_contig862:8931..89411622816944.1620753-UTR-L-elsbetiae_contig862:8931..8941Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig862 8932..8941 +
1691683930.8552556-UTR-L-elsbetiae_contig862:8931..89411691683930.8552556-UTR-L-elsbetiae_contig862:8931..8941Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig862 8932..8941 +
1622816944.20808-UTR-L-elsbetiae_contig862:11744..121311622816944.20808-UTR-L-elsbetiae_contig862:11744..12131Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig862 11745..12131 +
1691683930.9060583-UTR-L-elsbetiae_contig862:11744..121311691683930.9060583-UTR-L-elsbetiae_contig862:11744..12131Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig862 11745..12131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816944.1760535-CDS-L-elsbetiae_contig862:8941..90261622816944.1760535-CDS-L-elsbetiae_contig862:8941..9026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig862 8942..9026 +
1691683930.8670871-CDS-L-elsbetiae_contig862:8941..90261691683930.8670871-CDS-L-elsbetiae_contig862:8941..9026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig862 8942..9026 +
1622816944.186922-CDS-L-elsbetiae_contig862:10029..104571622816944.186922-CDS-L-elsbetiae_contig862:10029..10457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig862 10030..10457 +
1691683930.8799183-CDS-L-elsbetiae_contig862:10029..104571691683930.8799183-CDS-L-elsbetiae_contig862:10029..10457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig862 10030..10457 +
1622816944.1974747-CDS-L-elsbetiae_contig862:11588..117441622816944.1974747-CDS-L-elsbetiae_contig862:11588..11744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig862 11589..11744 +
1691683930.897587-CDS-L-elsbetiae_contig862:11588..117441691683930.897587-CDS-L-elsbetiae_contig862:11588..11744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig862 11589..11744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig862.17654.1

>prot_L-elsbetiae_contig862.17654.1 ID=prot_L-elsbetiae_contig862.17654.1|Name=mRNA_L-elsbetiae_contig862.17654.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=223bp
MKLLLLLLALARCRSFLVVPAPLAPGTTSAAAAAAAEPGQLSSRRTQQQH
RGPPSRLSSSPRMSPEDLDEARQRLIASSSYKQMVDRVDGNSPFADLDGS
TGSSSSRGVKEEEVAEAPSVSFLRQAARAAVDVAVAFVPVALVVTLVKFP
PPVVEALSSAAAAVKASPLEPVLEALPWEPNVVLKCVTLAVVAILLSPVA
DRLVVSPSIHLWAQARIRSMSS*
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mRNA from alignment at L-elsbetiae_contig862:8932..12131+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig862.17654.1 ID=mRNA_L-elsbetiae_contig862.17654.1|Name=mRNA_L-elsbetiae_contig862.17654.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3200bp|location=Sequence derived from alignment at L-elsbetiae_contig862:8932..12131+ (Laminarionema elsbetiae ELsaHSoW15)
GATCGCTGTTATGAAGTTGCTTCTACTCCTCTTGGCACTGGCTCGATGCC
GGTCTTTCCTCGTCGTGCCTGCTCCTCTTGCACCCGGCACTACCTGTGAG
TGAAGTGTACCTGTCATGTTGTCATTCAATTGAGCGCGTCAGCAAGGTCT
CAACTCGAGGCTGCATGCACCAACCTCCGTCACAGCTCGCAAAGATTTGT
CTGAGCGATAGGGTTGTGCGTGTTTCCATTGTATTCTATAGTTTGTGCAG
CACGCTGCGCGCGTACCTCTTTTCTGCCGGTTTGCACGTTTGCATGCAAC
ACACACGCACAAACACACACACACACACACACACACACACACACGAAATG
GTACACGGAACATGCACCGCTGTTCCCTCCCCTCGGAACGCCTCGAGGTG
ATGTACATATACACGTACATCAACATCGCTGTAAGCTAACGCCACTCGTT
TCCTGCCAACAAAAGCAATGCTAGTCCCACTAGAATGCTGGTATCGTAGC
AAGTTGGTGAACCTGCCGTTACATCGATGGTGGCCCCCATTTTACACACG
AAGAACGAAGAAACCACGTAGACTATTTAGGTAGGTATCGCACACGCAGC
AGTCCTTTCTCGCCGACAGCTTGGATGCACAGATAGTCTACACGTACTTT
ATAAAGCCGGAAGCCTACAACACACCGTGCAGAACGAGGAACGGGCTGAA
AGTAGGTCGTGGGTACTTAGAATATGCGATTATCGTGTGGCAGCATCATC
GACTGCCTCTTCTCTGCGAGCGTGCTCCGTCTCCCAACTACTGTTTCGAA
CTGCAACAACTTAGATATACATGCAATTTGGTCGAATCACCAACCCTGTT
TAACAAAGTTATTAATGGGCTGCACGGCTGGTCGCTTTCCACGCACTTTA
TTGGCATGAGCCGCTTTCAGAGCCGGTCTACAATAAAGCGTACACACATA
TCTACATACACTCTGTGTACCAGTCTACAACTAAAGCGTTGCGTATTATC
GGATAAATATCACGTCGTATCTGACATCTCACGAACGACCGGACACCCTC
CACTCGGCTTACAACGTGTCTTCTTCCCAACCATACCTCGCCCGGCAGCG
GCAGCGGCAGCGGCGGCAGCCGAGCCGGGACAGTTATCTTCCCGCCGGAC
ACAGCAGCAGCACCGAGGCCCGCCGAGTCGCCTTTCCTCGTCTCCCCGGA
TGTCCCCAGAGGATCTCGACGAGGCACGCCAGCGCCTGATTGCGTCAAGC
AGCTACAAGCAGATGGTCGACCGGGTGGACGGCAACAGCCCGTTTGCAGA
CCTGGATGGATCCACCGGCAGCAGCAGCAGCAGAGGCGTCAAAGAGGAAG
AAGTGGCAGAGGCGCCAAGCGTGTCGTTCTTGCGGCAGGCGGCTCGAGCG
GCTGTTGATGTGGCGGTCGCGTTTGTGCCGGTGGCATTAGTCGTCACCTT
GGTGAAGTTTCCGCCCCCGGTTGTGGAAGCCTTGTCGTCAGCAGCGGCGG
CAGTAAAGGCATCGCCGTTAGAACCGGTGAGGCCGCAGAGGTTAAGACCT
CGAATTAAAACGGTTCAAAATCAATATAAAACTACCCGGTTTCACAGATT
TTATACCCACAGCAGCCTGGAACGGAAAGTTACCGTATAGGATGGCAAGT
TTGTCTGAAACAGAAACAGACCCTCTGAAAAGATTTTTTCACCAACGAAC
TGTATACATGGATTATGGATATTGTGCGAGTAGCTTGGGTGGTGAGGGGG
AATTAGTATGTTTGCCTACAACAGTAGTCCGTCCGTCCCCCTGGAATGGC
TTTTTCGCAGACTGGACGTACACTGCTGATATTTGTATACAATAGTTGAA
AGAGGCCGGGTGGCGGGACTGTCAACCGGACTGTCTACAACAGTAGTCCG
CCCCCCTGGAATGACTTTTTCGCAGACTGGACGCAGACTGCTGACATTTG
TATACAATAGTTAAAAGAGGCAGGGTGGCGGGACTGTCAACGAACGGGAC
TGTCGACAACAGTATTGTCCCCCTGGAATGACTTTTTCGCAGCCTGGACG
TAGACTGCTGATGTTTGTAGACATTTGTTAAAAAGTTACAGAGGGGTCGG
GGTCGCGAGCACACGACAGAAGATTAAGCACCACCGATGGCGCCAGTTTT
GTGTGGTATGAAGAGCTTTGCATGGGCCATTTTTTTTTTTTTGTCTCTGG
ACCATGGACATCGCACCGCTTCTTGTGTGCCGGCGAGGCCACGTTGGGCA
GACTCGCACGCGAGGCTCTTTCTTTTTTTTTGCATTCGAAAAACCCGCGT
ATTTTTTCCGAGATCATGCCTCGTTTCCCCGTAGTAGTAGTTATCCAAGG
CCAGTAGACAATGCCGATGCTGACGCTGATTGTTTGGAGCCCTAGCTACT
GCTGCTCATCGAAAACTGGGTTATGCCCGAAATCTTCAAATATTCAGAGG
CGAGGCTCGAGCTCCCCAGTTTCCAACGCCGCACACCGCAGCATGCGACT
ATGTACACATTCATCAGATTACAAGGTCTGCGTCCGAAAAATGCAAGCCT
TGTTTTTTCCTCTGCGCGCACGCCATTATCTACAATGAATGCTACATATG
TAAGCTCCGCTTTCATTTCTCAACCCATTTCTCCTCTCTCGTTGTTTTTC
TCAACAGGTACTGGAGGCATTGCCCTGGGAGCCGAACGTCGTGCTGAAAT
GTGTGACGCTGGCCGTGGTGGCTATTTTGCTATCCCCGGTGGCGGATCGG
TTGGTGGTTTCCCCATCCATCCACTTGTGGGCGCAAGCAAGAATCCGTTC
GATGTCCTCCTAAATTCAGCTGCAGGCGTATTGGTTTCTGTGTTTTTTTG
TGCATCGATATTTTGTTTTCTGTTCAGGACGGAGAACGCCGTCCGTCCGC
ACGATCGCATAGAATAAATACGGCAGAAAGTCACGCCATAGGTTTGCACG
AGTTCGTATTTTTTTTTCTTCTATTTTTCAGAAGGCAAACCGGGAAGCTG
GTGCGTTTCCCTATATAGGTAGTGGGCAAGACCTGAAGGGGTATTGTCGT
AGGCAATTATCGCGTCAGGCTTGACGCGGGTGCGGTCGTAGGATCGATAC
TTAGATATAGATTTTATGATATGTAAGCAAGTTTTGCGGTTTTGGATCGA
GAGAGCGTCTTCGTTGCGTCTCACATTGCCCCACGGAACAAACTTTGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig862:8932..12131+

>mRNA_L-elsbetiae_contig862.17654.1 ID=mRNA_L-elsbetiae_contig862.17654.1|Name=mRNA_L-elsbetiae_contig862.17654.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1338bp|location=Sequence derived from alignment at L-elsbetiae_contig862:8932..12131+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTTGCTTCTACTCCTCTTGGCACTGGCTCGATGCCGGTCTTTCCT
CGTCGTGCCTGCTCCTCTTGCACCCGGCACTACCTATGAAGTTGCTTCTA
CTCCTCTTGGCACTGGCTCGATGCCGGTCTTTCCTCGTCGTGCCTGCTCC
TCTTGCACCCGGCACTACCTCGGCAGCGGCAGCGGCGGCAGCCGAGCCGG
GACAGTTATCTTCCCGCCGGACACAGCAGCAGCACCGAGGCCCGCCGAGT
CGCCTTTCCTCGTCTCCCCGGATGTCCCCAGAGGATCTCGACGAGGCACG
CCAGCGCCTGATTGCGTCAAGCAGCTACAAGCAGATGGTCGACCGGGTGG
ACGGCAACAGCCCGTTTGCAGACCTGGATGGATCCACCGGCAGCAGCAGC
AGCAGAGGCGTCAAAGAGGAAGAAGTGGCAGAGGCGCCAAGCGTGTCGTT
CTTGCGGCAGGCGGCTCGAGCGGCTGTTGATGTGGCGGTCGCGTTTGTGC
CGGTGGCATTAGTCGTCACCTTGGTGAAGTTTCCGCCCCCGGTTGTGGAA
GCCTTGTCGTCAGCAGCGGCGGCAGTAAAGGCATCGCCGTTAGAACCGCG
GCAGCGGCAGCGGCGGCAGCCGAGCCGGGACAGTTATCTTCCCGCCGGAC
ACAGCAGCAGCACCGAGGCCCGCCGAGTCGCCTTTCCTCGTCTCCCCGGA
TGTCCCCAGAGGATCTCGACGAGGCACGCCAGCGCCTGATTGCGTCAAGC
AGCTACAAGCAGATGGTCGACCGGGTGGACGGCAACAGCCCGTTTGCAGA
CCTGGATGGATCCACCGGCAGCAGCAGCAGCAGAGGCGTCAAAGAGGAAG
AAGTGGCAGAGGCGCCAAGCGTGTCGTTCTTGCGGCAGGCGGCTCGAGCG
GCTGTTGATGTGGCGGTCGCGTTTGTGCCGGTGGCATTAGTCGTCACCTT
GGTGAAGTTTCCGCCCCCGGTTGTGGAAGCCTTGTCGTCAGCAGCGGCGG
CAGTAAAGGCATCGCCGTTAGAACCGGTACTGGAGGCATTGCCCTGGGAG
CCGAACGTCGTGCTGAAATGTGTGACGCTGGCCGTGGTGGCTATTTTGCT
ATCCCCGGTGGCGGATCGGTTGGTGGTTTCCCCATCCATCCACTTGTGGG
CGCAAGCAAGAATCCGTTCGATGTCCTCCTAAGTACTGGAGGCATTGCCC
TGGGAGCCGAACGTCGTGCTGAAATGTGTGACGCTGGCCGTGGTGGCTAT
TTTGCTATCCCCGGTGGCGGATCGGTTGGTGGTTTCCCCATCCATCCACT
TGTGGGCGCAAGCAAGAATCCGTTCGATGTCCTCCTAA
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