prot_L-elsbetiae_contig8587.17621.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8587.17621.1
Unique Nameprot_L-elsbetiae_contig8587.17621.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length831
Homology
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BLAST of mRNA_L-elsbetiae_contig8587.17621.1 vs. uniprot
Match: D7G8L6_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L6_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 5.570e-88
Identity = 168/371 (45.28%), Postives = 222/371 (59.84%), Query Frame = 0 
Query:  471 SVSDSTDTIDPPGSIDDDEARYLSRRGEKEGSSGVKQEPVCRDRFSHNTFCSSCKSFRTEQEALAKCAACPRIMCRTCAAHKGEKVPRGLNADDTVFPPGKCLCQKRDSEFPSPG-GKDPQAHLLKQLKKHDLAYMFLEPVNVEENPGYLDYVARAGMIDLGTMTTKMKKHKQYQSLRGKLMFRRDLKKMWENCWTFAGHTPESSIEKAAGIVRCTLTLEAMVHKFYEVYMEDRELVTDQGTWQADQERRHNEKFVLCANPSVSLSR-PGDRLDDEDEPPLAAAEYEDGSDDDIDLDEENARIGATVCHKRKFLFTDXXXXXXXXXXIPTHANVSAGK-----------------EGLDRNICALADIGQH 822
            S ++ST   +P    D  +     +      S      P  RDR+ H TFCS C+  RTE +A+AKC ACPRI+CR CA  +GE VP+   ADD V P  KCLCQ +DSEFP P  GKDPQAHLLK L +HDL+ MF EPV+VE NPGYL  V R  M+DLGTM  ++ K KQYQS RG+  FR DL+K+W NCW +AG+ P SS ++A GIV CTL L+ M+ ++Y  YME +ELV D+ +WQA +ERR  E+F   A+  ++ +  P     D+ +P        DGSD++ D D+EN R+G ++CHKRKF   D             HA++S+                   EGLD+N+CALA IG++
Sbjct:   39 STNNSTGVSEPVAQRDTPDVETGEKSDTFSTSEAEDTRPNPRDRYRHCTFCSVCEKPRTEPKAVAKCEACPRILCRKCAGREGETVPKTKYADDVVLPLHKCLCQTKDSEFPEPKKGKDPQAHLLKHLLRHDLSVMFREPVDVETNPGYLGVVTREDMMDLGTMKRRLLKKKQYQSPRGQQKFRTDLEKIWVNCWKYAGYKPGSSDDRA-GIVMCTLILKTMIERYYADYMEQQELVVDERSWQAGRERRKREQFARIAHTPLNPALWPNGTCADQLDPV-------DGSDEETDSDDENMRLGDSICHKRKFGSDDSEEQAALNTT--AHASISSAPLVDGGGSSAGVRVACNVEGLDQNMCALAAIGKN 399
[Close]
BLAST of mRNA_L-elsbetiae_contig8587.17621.1 vs. uniprot
Match: A0A6H5LCM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCM5_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.810e-26
Identity = 77/209 (36.84%), Postives = 103/209 (49.28%), Query Frame = 0 
Query:  471 SVSDSTDTIDPPGSIDDDEARYLSRRGEKEGSSGVKQEPVCRDRFSHNTFCSSCKSFRTEQEALAKCAACPRIMCRTCAAHKGEKVPRGLNADDTVFPPGKCLCQKRDSEFPSPG-GKDPQAHLLKQLKKHDLAYMFLEPVNVEENPGYLDYVARAGMIDLGTMTTKMKKHKQYQSLRGKLMFRRDLKKMWENCWTFAGHTPESSIEKA 678
            S ++ST   DP    D  +     +      S       + RDR+ H TFCS C+  RTE +A+AKC ACPRI+CR CA  +GE +P+                ++R  EFP P  GKDPQAHLLK + +H                           +DLGTM  ++ K KQYQS RG+  FR DL+K W  CW +AG+   SS ++A
Sbjct:  259 STNNSTGLSDPIAQRDAPDVETGEKSDTFSASEAEDTRSIPRDRYRHCTFCSVCEKPRTEPKAVAKCEACPRILCRKCAGREGETLPKA---------------RRRTQEFPKPKKGKDPQAHLLKHIVRH------------------------GHDVDLGTMEKRLFKKKQYQSPRGQPKFRTDLEKFWVKCWKYAGYKAGSSDDRA 428
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8587.17621.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8L6_ECTSI5.570e-8845.28Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5LCM5_9PHAE1.810e-2636.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainSMARTSM00297bromo_6coord: 579..697
e-value: 8.9E-4
score: 21.3
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 592..669
e-value: 3.1E-10
score: 40.0
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 598..674
score: 9.973
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 575..713
e-value: 2.7E-16
score: 61.5
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 590..680
IPR037800Histone acetyltransferase GCN5PANTHERPTHR45750FAMILY NOT NAMEDcoord: 592..668
NoneNo IPR availablePRODOMPD010558coord: 21..87
e-value: 0.003
score: 102.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8587contigL-elsbetiae_contig8587:3334..6673 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8587.17621.1mRNA_L-elsbetiae_contig8587.17621.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8587 2146..6700 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8587.17621.1 ID=prot_L-elsbetiae_contig8587.17621.1|Name=mRNA_L-elsbetiae_contig8587.17621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=831bp
MNFGAFQGPNITMAADDFVGMRQLQAQLRQEVERLSNRCCDLENQVNAQI
QARRASDSQVFQLERARIAREADIVALRSQLDQEGLRADAIGEAGRPVLY
PASLPVRLVSVGNSRTDLAAVREFSRNDSADPSKLSEPSPGPVPPLSLYP
HDIPEQDRETIRTRMLKDRGPRTPVPAASQQEVEKAPPALSPDAPVSGPS
HDGGITPNEAGASQLDREKGTEAADVDSEETEDDCADDDMEVDDDDDFDD
CCAHATTTSASSVTLGCPDKQEPCNQDADNGLANLAPSPTAAENFAAGDG
PAPVKTADDCCSRDITTFASTVSLICPDKQEPCDQDDGNREANPAPSPTA
AGNGSTNNNLAPVKTESCAVPCTTFGSYALSASTTASEPVSSSSAVHGHE
AEGAGGTPSRSGGFITAPSVVKTEAIPSLASAAVSREAPKVTNGSTSPAP
TSFSHQLFSPSAVTEANSMRSVSDSTDTIDPPGSIDDDEARYLSRRGEKE
GSSGVKQEPVCRDRFSHNTFCSSCKSFRTEQEALAKCAACPRIMCRTCAA
HKGEKVPRGLNADDTVFPPGKCLCQKRDSEFPSPGGKDPQAHLLKQLKKH
DLAYMFLEPVNVEENPGYLDYVARAGMIDLGTMTTKMKKHKQYQSLRGKL
MFRRDLKKMWENCWTFAGHTPESSIEKAAGIVRCTLTLEAMVHKFYEVYM
EDRELVTDQGTWQADQERRHNEKFVLCANPSVSLSRPGDRLDDEDEPPLA
AAEYEDGSDDDIDLDEENARIGATVCHKRKFLFTDDDDDDDDDDDIPTHA
NVSAGKEGLDRNICALADIGQHYLKYSGET*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf
IPR037800GCN5