mRNA_L-elsbetiae_contig8406.17418.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8406.17418.1
Unique NamemRNA_L-elsbetiae_contig8406.17418.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8406.17418.1 vs. uniprot
Match: D8LBQ9_ECTSI (cAMP-dependent protein kinase regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBQ9_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.610e-13
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:  289 IALRARCQEALGFLHFVKRVREEKREDAAAXXX---AGHGWDWVEDNCRC 429
            IA+RARCQEAL FL +V+RV EEK EDAAAXXX   AGHGWDWVE+NCRC
Sbjct:    2 IAMRARCQEALSFLRYVRRVLEEKGEDAAAXXXXXAAGHGWDWVEENCRC 51
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BLAST of mRNA_L-elsbetiae_contig8406.17418.1 vs. uniprot
Match: A0A6H5JUG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG7_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.750e-10
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:  289 IALRARCQEALGFLHFVKRVREEKREDAAAXXX---AGHGWDWVEDNCRC 429
            IA RARC EAL FL +V++V EEK EDAA XXX   AGHGWDWVE+NCRC
Sbjct:    2 IARRARCLEALRFLRYVRKVLEEKGEDAAXXXXXXXAGHGWDWVEENCRC 51
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8406.17418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBQ9_ECTSI2.610e-1378.00cAMP-dependent protein kinase regulatory subunit n... [more]
A0A6H5JUG7_9PHAE1.750e-1072.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8406contigL-elsbetiae_contig8406:3342..3796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size455
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816923.3480122-CDS-L-elsbetiae_contig8406:3341..37881622816923.3480122-CDS-L-elsbetiae_contig8406:3341..3788Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8406 3342..3788 +
1691683915.478043-CDS-L-elsbetiae_contig8406:3341..37881691683915.478043-CDS-L-elsbetiae_contig8406:3341..3788Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8406 3342..3788 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816923.3589754-UTR-L-elsbetiae_contig8406:3788..37961622816923.3589754-UTR-L-elsbetiae_contig8406:3788..3796Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8406 3789..3796 +
1691683915.4884973-UTR-L-elsbetiae_contig8406:3788..37961691683915.4884973-UTR-L-elsbetiae_contig8406:3788..3796Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8406 3789..3796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8406.17418.1prot_L-elsbetiae_contig8406.17418.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8406 3342..3788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8406.17418.1

>prot_L-elsbetiae_contig8406.17418.1 ID=prot_L-elsbetiae_contig8406.17418.1|Name=mRNA_L-elsbetiae_contig8406.17418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
LLRPLEQQEEGEGQDSSPLLAPVVPTSLGGVVRAHNLARRLKRAAIASAA
NKAGEKPPLAFDDDDDDNDGDHDDGDDENEGVASSAVDLNAASIARIALR
ARCQEALGFLHFVKRVREEKREDAAAAAAAGHGWDWVEDNCRCGPEAS*
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mRNA from alignment at L-elsbetiae_contig8406:3342..3796+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8406.17418.1 ID=mRNA_L-elsbetiae_contig8406.17418.1|Name=mRNA_L-elsbetiae_contig8406.17418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=455bp|location=Sequence derived from alignment at L-elsbetiae_contig8406:3342..3796+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCTCAGACCCCTCGAGCAGCAAGAAGAAGGAGAAGGGCAAGACAGCAG
TCCGTTGCTCGCACCCGTCGTTCCCACCAGCTTAGGTGGTGTCGTCAGGG
CGCACAATCTTGCCCGAAGGCTGAAGCGTGCTGCAATCGCATCAGCAGCA
AACAAGGCGGGCGAGAAACCTCCACTCGCCTTTGACGATGACGACGACGA
TAATGACGGCGACCACGACGACGGCGACGACGAGAACGAAGGCGTCGCTT
CATCCGCTGTGGACCTCAACGCGGCGAGCATCGCCAGGATCGCCTTGCGG
GCGCGTTGTCAGGAAGCACTGGGCTTTCTGCACTTCGTCAAGAGAGTACG
GGAAGAGAAGAGAGAAGACGCGGCTGCCGCCGCCGCCGCTGGGCATGGCT
GGGACTGGGTCGAGGACAATTGCAGGTGTGGTCCTGAAGCGTCATGATGT
TTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8406:3342..3796+

>mRNA_L-elsbetiae_contig8406.17418.1 ID=mRNA_L-elsbetiae_contig8406.17418.1|Name=mRNA_L-elsbetiae_contig8406.17418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig8406:3342..3796+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCTCAGACCCCTCGAGCAGCAAGAAGAAGGAGAAGGGCAAGACAGCAG
TCCGTTGCTCGCACCCGTCGTTCCCACCAGCTTAGGTGGTGTCGTCAGGG
CGCACAATCTTGCCCGAAGGCTGAAGCGTGCTGCAATCGCATCAGCAGCA
AACAAGGCGGGCGAGAAACCTCCACTCGCCTTTGACGATGACGACGACGA
TAATGACGGCGACCACGACGACGGCGACGACGAGAACGAAGGCGTCGCTT
CATCCGCTGTGGACCTCAACGCGGCGAGCATCGCCAGGATCGCCTTGCGG
GCGCGTTGTCAGGAAGCACTGGGCTTTCTGCACTTCGTCAAGAGAGTACG
GGAAGAGAAGAGAGAAGACGCGGCTGCCGCCGCCGCCGCTGGGCATGGCT
GGGACTGGGTCGAGGACAATTGCAGGTGTGGTCCTGAAGCGTCATGATTG
CTCAGACCCCTCGAGCAGCAAGAAGAAGGAGAAGGGCAAGACAGCAGTCC
GTTGCTCGCACCCGTCGTTCCCACCAGCTTAGGTGGTGTCGTCAGGGCGC
ACAATCTTGCCCGAAGGCTGAAGCGTGCTGCAATCGCATCAGCAGCAAAC
AAGGCGGGCGAGAAACCTCCACTCGCCTTTGACGATGACGACGACGATAA
TGACGGCGACCACGACGACGGCGACGACGAGAACGAAGGCGTCGCTTCAT
CCGCTGTGGACCTCAACGCGGCGAGCATCGCCAGGATCGCCTTGCGGGCG
CGTTGTCAGGAAGCACTGGGCTTTCTGCACTTCGTCAAGAGAGTACGGGA
AGAGAAGAGAGAAGACGCGGCTGCCGCCGCCGCCGCTGGGCATGGCTGGG
ACTGGGTCGAGGACAATTGCAGGTGTGGTCCTGAAGCGTCATGA
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