mRNA_L-elsbetiae_contig8404.17416.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: A0A6H5JCS7_9PHAE (REJ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS7_9PHAE) HSP 1 Score: 385 bits (989), Expect = 1.750e-116 Identity = 241/474 (50.84%), Postives = 288/474 (60.76%), Query Frame = 1
Query: 145 LRRPQHLILLLADWMSAIMLQAVFYGKSQYGVRQKVEMTVVSALFMLPAGLIFPALLRAANTPPASQTLKRTEGVHQ-----------DAIEDTEDEMAHEHQ------GNEPRARLARWKSSKSR-----------RGWFGNHRDKLAHSSMPTPMRRQGTASPFFAPSAAATVVETTAYKDVMEMQKMLLAVYLPLPILLAMLVSE--------------------------------------------------------------------------VLRVSTKAEEAGGDDHAFLHNMTTSLSLACCVLSALSAFAVVSRNARVMVQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEIQKQYENVLSDLIEGDLVAAWSNPTSQMQNAAEAIQSCFRMHLASQRMVRALEFRTWLHDCRPQRRSMNILAGGAVVTTILCLTYTNMVFAVKFDR 1260
L R QHL+LLLADWMSAI+LQA+FYGKSQ+GVRQKVEMTVVSAL MLP G+IFPALLRA NTPPASQTLKR V Q D ++ ++E ++ + P R ++++ S R RG F RD + PT R + S T + T ++DV+ MQK LL VYLPLP+LLAMLVSE VLR+S +AE AGGD+HAFLHNM TSLS+AC VL ALSAFAVVSR+AR+MVQTT+FQAVVAPGL LCGVLLY SSASIA GAVLGAA+AL+GSYL+ +Q++ E++L++LIEGDLVAAWS PT +M AAE +Q C+R+H AS RM RALEF TWLH CR QRR M +LA GA+ TILCL YTNMVFA+KFDR
Sbjct: 950 LTRSQHLVLLLADWMSAILLQAIFYGKSQFGVRQKVEMTVVSALLMLPTGVIFPALLRAGNTPPASQTLKRV-AVRQEEPAGPNHDLYDELQRKQEERVNDFRIALQDGERSPSIRASKFRHSLHRTPRSNARGQIHRGGFSAPRDSPPRKTAPTRFSRSMSTS-----DLKPTGLSNT-FRDVVAMQKTLLLVYLPLPMLLAMLVSELLFTPQRLRLPCCMPVQQQGHGHDVTVGDLARNKCNRSALVSWKTSQNDFCSCSAGFTSSSEMKRRYRVLCKWQVLRISGEAEAAGGDEHAFLHNMVTSLSVACSVLCALSAFAVVSRSARIMVQTTTFQAVVAPGLALCGVLLYSSSASIAAGAVLGAAVALVGSYLVGVQRKCEDILNELIEGDLVAAWSQPTREMHKAAEIVQRCYRIHHASVRMTRALEFHTWLHGCRRQRRGMQVLASGALYITILCLIYTNMVFAIKFDR 1416
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: D7FJB7_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB7_ECTSI) HSP 1 Score: 342 bits (876), Expect = 1.150e-100 Identity = 203/353 (57.51%), Postives = 251/353 (71.10%), Query Frame = 1
Query: 145 LRRPQHLILLLADWMSAIMLQAVFYGKSQYGVRQKVEMTVVSALFMLPAGLIFPALLRAANTPPASQTLKRT-------EGVHQDAIEDTEDEMAHEHQGNEPRARLARWKSS---KSRRGWFGNHRDKLAHSSMPTPMRRQGTASP---FFAPSAAATVVETTAYKDVMEMQKMLLAVYLPLPILLAMLVSE-----------------------VLRVSTKAEEAGGDDHAFLHNMTTSLSLACCVLSALSAFAVVSRNARVMVQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEIQKQYENVLSDLIEGDLVAAWSNPTSQMQNAAEAIQSCFRM 1095
L R QHL+LLLADWMSAI+LQA+FYGKSQ+GVR+KVEMTV+SAL MLP G+IFPALLRA NTPPASQTLKR EG + D ++ + + E + ++ R L +SS + RG F RD + PT SP +F+ + A VV+T AY+DV+ MQK LL VYLPLP+LLAMLVSE VLR+S +AE AGGD++AFLHNM TSLS+AC VL ALSAFAVVSR+AR+MVQTT+FQAVVAPGL LCGVL+Y SSASIA GAVLGAA+AL+GSYL+ +Q++YE++L++LIEGDLVAAWS PT +M AAE +Q C+R+
Sbjct: 888 LTRSQHLVLLLADWMSAILLQAIFYGKSQFGVRKKVEMTVISALLMLPTGVIFPALLRAGNTPPASQTLKRVPVRQEEPEGPNHDLYDELQRKQ--EERVDDFRTALQDARSSAREQMHRGGFSAPRDSPPRKTAPTRFVANVRRSPNEFYFSATNATPVVQTAAYRDVVAMQKTLLLVYLPLPMLLAMLVSEQQGHRHDVTVDDLAQNKCNRSALVLRISREAEAAGGDEYAFLHNMVTSLSVACSVLCALSAFAVVSRSARIMVQTTTFQAVVAPGLALCGVLMYNSSASIAAGAVLGAAVALVGSYLVGVQRKYEDILNELIEGDLVAAWSQPTREMHMAAEIVQRCYRV 1238
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: D7FJB6_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB6_ECTSI) HSP 1 Score: 327 bits (839), Expect = 1.900e-95 Identity = 195/322 (60.56%), Postives = 230/322 (71.43%), Query Frame = 1
Query: 145 LRRPQHLILLLADWMSAIMLQAVFYGKSQYGVRQKVEMTVVSALFMLPAGLIFPALLRAANTPPASQTLKRTEGVHQDAIEDTE---DEMAHEHQGNEPRARLARWKSSKSRR-GWFGNHRD--KLAHSSMPTPMRRQGTASPFFAPSAAATVVETTAYKDVMEMQKMLLAVYLPLPILLAMLVSEVLRVSTKAEEAGGDDHAFLHNMTTSLSLACCVLSALSAFAVVSRNARVMVQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEIQKQYENVLSDLIEGDLVAAWSNPTSQMQNAAEAIQSCFR 1092
L RPQHL+LLL DWMSAI+LQA+FYGKSQ+GV EM VVSALFMLPAG++FPALLR ANTPPASQTL+R + + E D E + + + +RR G+ HR K + M T + QGTASPF P A VVET AY DV+EMQK LL VY+PLPILLAMLVSEVL VS +AE GGD++A LHNM TSLSLA VL +SAF+V+SR+AR M + T+FQ VVAPG+ LCGVLL GSS IA GAVLGA I L+G+YL+ IQ++YE +LSDLIEGDLVAAWSNPT +M AAE IQ CFR
Sbjct: 1101 LTRPQHLVLLLTDWMSAIVLQALFYGKSQFGV----EMAVVSALFMLPAGVVFPALLRVANTPPASQTLQRPVSLEEQPERTAEYRTDRRQVEQEKTDDGFLATLQQGDATRRVGFQEQHRPPRKASPIRMFTAIEAQGTASPFLKPKPNAAVVETAAYLDVVEMQKALLLVYVPLPILLAMLVSEVLSVSREAEADGGDEYAVLHNMVTSLSLASSVLCMVSAFSVMSRSARTMRKATAFQGVVAPGMALCGVLLLGSSVFIAAGAVLGAVITLVGAYLVGIQRKYEEILSDLIEGDLVAAWSNPTREMHKAAETIQCCFR 1418
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: A0A6H5JGV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV2_9PHAE) HSP 1 Score: 275 bits (702), Expect = 1.170e-81 Identity = 170/393 (43.26%), Postives = 232/393 (59.03%), Query Frame = 1
Query: 145 LRRPQHLILLLADWMSAIMLQAVFYGKSQYGVRQKVEMTVVSALFMLPAGLIFPALLRAANTPPASQTLKRTEGVHQDAIEDTEDEMAHEHQG----------NEPRARLARWKSSKSRRGWFGNHRDKLAHSSMPTPMRRQGTASPFFAPSAAATVVE---------TTAYKDVMEMQKMLLAVYLPLPI-LLAMLVSEVLRVSTKAEEAG-GDDHAFLHNMTTSLSLACCVLSALSAFAVVSRNARVMVQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEIQKQYENVLSDLIEGDLVAAWSNPTSQMQNAAEAIQSCFRMHLASQRMVRALEFRTWLHDCRPQRRSMNILAGGAVVTTILCLTYTNMVFAVKFDR 1260
L R QHL+LLLADWMSA+ LQAVFYGKSQ+ +R K +MTV +ALFM+P L+FP LLR ANTPP S+T+ + DA E+ H G N PR S+K G + PT RR+ F S TVVE T Y+D++ Q++++A+ L LP+ + A+ V V+ V+ +A + GD +A +HN+T SL + C +L SA+ V + M + +FQA+VAPGL+LCG +L+ S ++ATGA+L L+ SYL +Q++ E VL + E DL+ AWSNPT M +AA +Q FRMHLA+ RM RA+EF TWL++C+PQR M IL + TILCL YTN+VFA +FDR
Sbjct: 118 LTRSQHLVLLLADWMSAVALQAVFYGKSQFSIRNKAQMTVTTALFMIPTALVFPFLLRKANTPPISETVIKAGRSRHDAPF-KENSRRHAQHGVLGHHHPPDKNTPRDEQQPALSTKRSSVIRGTVVTNITLQDPPTLARRRERKPSAFVQSP--TVVESISGVSANKTAVYRDIIMWQRVIVALCLILPVWMAAVFVPMVILVALEASSSPEGDPNALVHNLTASLGIVCSLLCVYSAYGVGAHRVIAMTKAMAFQAIVAPGLVLCGGMLFDSDTALATGAMLSGLACLLCSYLTRLQRKNELVLKGVCEQDLITAWSNPTLDMHSAAAVVQRSFRMHLAATRMARAVEFSTWLNNCKPQRSYMYILVNSIIYVTILCLAYTNLVFAARFDR 507
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: A0A6H5JVI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI0_9PHAE) HSP 1 Score: 202 bits (515), Expect = 7.260e-57 Identity = 137/392 (34.95%), Postives = 193/392 (49.23%), Query Frame = 1
Query: 187 MSAIMLQAVFYGKSQYGVRQKVEMTVVSALFMLPAGLIFPALLRAANTPPASQTLKRTEGVHQDAIEDTEDEMAHEHQGNEPRARLARWKSSKSRRGWFGNHRDKLAHSSMPTPMRRQGTASPFFAPSAAATVVETTAYKDVMEMQKMLLAVYLPLPILLAMLVSEVLRVSTKAEEA-GGDDHAFLHNMTTSLSLACCVLSALSAFAVVSRNARVMVQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEIQKQYENVLSDLIEGDLVAAWSNPTSQMQNAAEAIQSCFR---------------------------------MHLASQRMVRALEFRTWLHDCRPQRRSMNILAGGAVVTTILCLTYTNMVFAVKFDR 1260
MSA+ LQA+FYGKSQ+ +R+K EMT +ALFM+P L+FPA++R ANTPP+S+TL R + + AH+ Q +L + RD+L + F A A DV Q V RV +AE+A GG+ +A LHN+T SL + C +L A+SA+ V + +M Q FQAV+AP L+LCG +LYGSS +ATGAV G L+ +Y + + ++ E V+ + E DL+ AWS+P M +A +Q +R +H A R R +EF TWL+ C+ +R M++L V ILCLTYTN+VFA+KFDR
Sbjct: 1 MSAVTLQAIFYGKSQFSIREKAEMTAATALFMIPTALVFPAMMRLANTPPSSETLTRVR----------KHKTAHKQQPQGGNKQLM-------------SQRDRLV----------KAQREEFHA-----------ALSDVTGPQ--------------------VFRVMGEAEKAPGGNQNARLHNVTASLGILCTLLCAVSAYGVAAHRVTIMSQAMVFQAVLAPALVLCGAILYGSSVGLATGAVFGGLGTLVCAYFLRVHRRIELVVRKVCEDDLITAWSHPVPSMHSAVLRVQQAYRGFLLSAYHYCTSFIESTVGDNLVLNLGCTTLTRIHRAMTRTARIVEFTTWLNKCKRRRSVMHMLVNSVVYVVILCLTYTNLVFAIKFDR 328
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: D7G0E0_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E0_ECTSI) HSP 1 Score: 167 bits (424), Expect = 2.430e-41 Identity = 116/373 (31.10%), Postives = 162/373 (43.43%), Query Frame = 1
Query: 145 LRRPQHLILLLADWMSAIMLQAVFYGKSQYGVRQKVEMTVVSALFMLPAGLIFPALLRAANTPPASQTLKRTEGVHQDAIEDTEDEMAHEHQGNEPRARLARWKSSKSRRGWFGNHRDKLAHSSMPTPMRRQGTASPFFAPSAAATVVETTAYKDVMEMQKMLLAVYLPLPILLAMLVSEVLRVSTKAE-EAGGDDHAFLHNMTTSLSLACCVLSALSAFAVVSRNARVMVQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEIQKQYENVLSDLIEGDLVAAWSNPTSQMQNAAEAIQSCFRMHLASQRMVRALEFRTWLHDCRPQRRSMNILAGGAVVTTILCLTYTNMVFAVKFDR 1260
L R QHL++LLADWMS + LQA+FYGKSQ+ +R+K A EH +R G HR+ +V RV +AE +AGG+ FLHN+T SL +AC +L SA+ VV+ +M Q + QAV+ P L+LCG +L+GS +ATGAV G L+ +Y + + ++ E V+ + + DL+ WS+P M +AA +Q FRMH A++R RA+EF TWLH+C+ R M + V ILCLTY N+VFA+KFDR
Sbjct: 377 LTRSQHLVILLADWMSVLTLQAIFYGKSQFSIREKGS--------------------------------------------------AEEHN---------------ARVGGGERHRE-------------------------------------------------------------QVFRVMDEAEGDAGGNQEEFLHNLTASLGIACGLLCLFSAYGVVTHRVTIMSQAMAAQAVITPALVLCGAVLFGSDIGLATGAVFGGLGTLLCAYFLNMHRKNELVVQRVCQEDLITTWSHPLPFMHSAALPVQRAFRMHRAAKRTTRAIEFNTWLHECKHGRSVMYVCLNSLVYVVILCLTYANLVFAIKFDR 623
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: A0A6H5JM73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM73_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 8.270e-15 Identity = 48/127 (37.80%), Postives = 67/127 (52.76%), Query Frame = 1
Query: 922 GAVLGAAIALIGSYLIEIQKQYENVL-SDLIEGDLVAAWSNPTSQMQNAAEAIQSCFR-------------MHLASQRMVRALEFRTWLHDCRPQRRSMNILAGGAVVTTILCLTYTNMVFAVKFDR 1260
GAV G L+ YL+++ +Q E S + + DL+ WS P M +AA +Q FR MH + R RA+EF T L++C+ +R M + V ILCLTY N+VFA+KFDR
Sbjct: 9 GAVFGGLGTLVCPYLLKMHRQAERTGGSKVCQEDLITTWSYPLPFMHSAALHLQRAFRTDQVECGAQTVSRMHRDATRTTRAIEFNTCLNECKQRRSMMYVCPNSVVYVAILCLTYANLVFAIKFDR 135
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: D7G0E1_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E1_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 1.210e-6 Identity = 35/73 (47.95%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 61 PTPCTSCLAELPSEACSIFH------GGPCPG---R*LRRPQHLILLLADWMSAIMLQAVFYGKSQYGVRQKV 252
P+ T CLA +++ + H G P L R QHL++LLADWMSA+ LQAVFYGKSQ +RQKV
Sbjct: 374 PSKRTDCLATASAKSVFMNHAWRHLWGSPTEHFKKTLLTRSQHLVILLADWMSAVALQAVFYGKSQVSIRQKV 446 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8404.17416.1 >prot_L-elsbetiae_contig8404.17416.1 ID=prot_L-elsbetiae_contig8404.17416.1|Name=mRNA_L-elsbetiae_contig8404.17416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=359bp MSAIMLQAVFYGKSQYGVRQKVEMTVVSALFMLPAGLIFPALLRAANTPPback to top mRNA from alignment at L-elsbetiae_contig8404:1885..5718+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8404.17416.1 ID=mRNA_L-elsbetiae_contig8404.17416.1|Name=mRNA_L-elsbetiae_contig8404.17416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3834bp|location=Sequence derived from alignment at L-elsbetiae_contig8404:1885..5718+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8404:1885..5718+ >mRNA_L-elsbetiae_contig8404.17416.1 ID=mRNA_L-elsbetiae_contig8404.17416.1|Name=mRNA_L-elsbetiae_contig8404.17416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2154bp|location=Sequence derived from alignment at L-elsbetiae_contig8404:1885..5718+ (Laminarionema elsbetiae ELsaHSoW15)back to top |