mRNA_L-elsbetiae_contig8391.17394.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8391.17394.1
Unique NamemRNA_L-elsbetiae_contig8391.17394.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8391.17394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8391contigL-elsbetiae_contig8391:4254..6725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size290
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816921.1349502-CDS-L-elsbetiae_contig8391:4255..44321622816921.1349502-CDS-L-elsbetiae_contig8391:4255..4432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8391 4256..4432 -
1691683913.7385447-CDS-L-elsbetiae_contig8391:4255..44321691683913.7385447-CDS-L-elsbetiae_contig8391:4255..4432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8391 4256..4432 -
1622816921.148815-CDS-L-elsbetiae_contig8391:6614..67251622816921.148815-CDS-L-elsbetiae_contig8391:6614..6725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8391 6615..6725 -
1691683913.748346-CDS-L-elsbetiae_contig8391:6614..67251691683913.748346-CDS-L-elsbetiae_contig8391:6614..6725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8391 6615..6725 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8391.17394.1prot_L-elsbetiae_contig8391.17394.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8391 4256..6725 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8391.17394.1

>prot_L-elsbetiae_contig8391.17394.1 ID=prot_L-elsbetiae_contig8391.17394.1|Name=mRNA_L-elsbetiae_contig8391.17394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
ATAATAAVGAEKKKLAYQGHSYWLRRLPSGGRGEDGKACTATAAATPSRT
TTAATAAIREGDGSSEFPDSVGPYEEEGDDECPLLEAWFSGDPQEE
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mRNA from alignment at L-elsbetiae_contig8391:4254..6725-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8391.17394.1 ID=mRNA_L-elsbetiae_contig8391.17394.1|Name=mRNA_L-elsbetiae_contig8391.17394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2472bp|location=Sequence derived from alignment at L-elsbetiae_contig8391:4254..6725- (Laminarionema elsbetiae ELsaHSoW15)
GCAACAGCAGCAACGGCGGCGGTGGGGGCGGAGAAAAAGAAGCTCGCATA
TCAAGGGCACTCGTACTGGCTGAGAAGGCTGCCAAGCGGTGGCAGAGGCG
AAGACGGCAAGGTGATAGTTATCCCTCCCGATTTCTTGAGCGGCGACACA
CCCGCCTGCTCGATTTCTGGAAAACGTTGGAAACGACCCACGGGGCGTAG
ATGTATGTTTATGTACATATCTTGTCTTCACATTAAAAACCGTTCCGATT
TCTCCGTCCAGTACCTCTCAATGTCCGTATTGTACTAATCCAACACTTGA
TGCGGTCAATTCCCGTGGTCACAGGCTAACTTATACCCAAGAAAAGGTAC
ACGAAAAATAAAATGGGCCCGAAGGGCCAGCAAAGCAATAATACTAGAAC
CCGTGGAGCGGAGCGGGGGAGTTTTTTTCGCGCTTCATCACAACAGCACA
ACCCGTGATGCGAAAAAGGACCTGCAGTAGGCTGGGTTGGGTGGGTGGAG
GATTATTCCATAAGTGTTGCGATGGCGGAAAAAATATTCCATTCGAATTT
TTTAAAACGCTTAGCCCCAGGACACGCAGTACCAACGGAGCCCGCCACCG
GCATGGGCACCTCTTCCACCATGTTGTCACAGCGGAGATATGCACTGCTG
CGCTCTTCTCTGACGCGAAGGACAAGGAATGCGCCAAACTCGAGCTGCGT
GGGGGTGCCGGCTACGAAATCCCCCGTCAACCCTCCTGGCCACGTCCCCC
TTGAATACCGTATGCGCGCGCCCCCCTCTTTTTTGCTCGCCCGCTCCGCG
AAGGTTCACACACACACTTCACAGCAGTACTCGACACAGAGCGACGCTAG
ACCGCCACGGATTGCAGCCGACACTGATCGTACCACACAGATGTAGGAAT
GACTGCTGATCGGCTATGAGAAGCCCTGCCAAGGTCCAGAGGAGCGGCGA
AGACCACTGTGAAATGCTCCCCGATTTTTGAACCAACGCACAACAGCACA
CCTCCAGTTCTCGCGGTTTGAAAGCATTGAGCCACCAGGCCCCTTTGCGG
TCCCAAAACACCACCCGAACACCCTTTGGCATATATAGATAGTGAAGGCC
GTGAGCTGTGCAGGACCAGCTCCGTTCTTGCGCGTCTACCATGAGGCTCA
AATTGGTCACCTCGTGTGCGCCGAGGTGCAAAAAATCCAAAACCAACCGC
CGTTTTTGCTGTGTTCGTTTGCCTGCTGACACCGCCACACGAGGTTGGCG
GGCCTGTCTGTGCTGCTATGGTGACCACAGCAGGCACTGCCTTACCCCTG
CTGTGGGAGCTTGTCTATGGTCTTGCGTGTGTTTGTCGTGCACATCATGG
CGTGTGTGTGGCGATGTATGTATGTAGTACCCGCGGTTGCTTGCATGGTT
CAGGCTTGCCCACAAGGCTACCTCCACATAGAGGACAAAACGATTGCCAA
CAGCTGAACCGCGCTTCGATTTGCGAAACGAAAGGCCTCACAAGCTTCTA
AAAAAATTGGGAGGTCGTGCACTTTTCCGCACTGGAATCGGTGCCCAAAT
GGCTTCTAAATCGGTGAAAAGGTGTGCTTAAAGGGCACGCACGAACACAC
GAACACACACACGGACATCAATTTGAGAACAGTATTTAATTCAGGGGTCG
CTCTGGCAGGGGGTGTTATTTAACGTGCGCGCACACAGGCGGGAACCAGA
AAGTCATCCATCTAAAACAGTTTTTTTGAAAAAAAATCTCCGCTATCGCT
GCATTTGTTTTGCGCGCGAAAAAAACTCCTAAAACAGATATCGAATCTGG
AGCCCTCCGCTTCCCTCTACACCCTATGTGAGGTAAAAACAAAACTGGAA
CAGCCAGCACCCCTATCTTGGTACCCCAACAAAGATAGTAGACTACAATA
TGTATGATCGCGATTCCCTCCGCCTTCGATCCCTCGACGAGAGCCGGGAA
CGCGGTCGGCACTCCTTTGCTGACTCGCGGATTTTGGCCTTTTATCGCGG
AATGCCTGGTTGATTTTCGAAACCCTCACCTGGTGCCCACAGCTGAGAGA
GCCCAAAAGACTTTTTCCCGCAGTTTTCTCACCAGTCGCCCGTCCGTGAC
TGTACCTAAATACGAAGTTCTTCGTATACCGCTTTGGAACTCTAAATATG
CTCCCGAAAACGAACGGTGCAGCCGCCGTAGCCTGCCCACCCAACGGCAC
TGTACCCCCCCCCCCCCACCCGCCGCGCCCGCTGGCGCCCGTCGCCTGTG
CCCTTCTTTATTCCCCGGCAAAAAATTGCCTGCACGTTTTCAGGCTTGCA
CGGCAACGGCGGCGGCAACACCGAGCCGCACAACAACGGCGGCAACCGCT
GCTATCCGCGAGGGTGACGGCAGCTCGGAGTTTCCGGACTCGGTGGGCCC
TTACGAGGAGGAGGGGGACGACGAGTGTCCGCTGTTGGAGGCCTGGTTCT
CAGGGGATCCGCAGGAGGAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8391:4254..6725-

>mRNA_L-elsbetiae_contig8391.17394.1 ID=mRNA_L-elsbetiae_contig8391.17394.1|Name=mRNA_L-elsbetiae_contig8391.17394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig8391:4254..6725- (Laminarionema elsbetiae ELsaHSoW15)
GCAACAGCAGCAACGGCGGCGGTGGGGGCGGAGAAAAAGAAGCTCGCATA
TCAAGGGCACTCGTACTGGCTGAGAAGGCTGCCAAGCGGTGGCAGAGGCG
AAGACGGCAAGGCAACAGCAGCAACGGCGGCGGTGGGGGCGGAGAAAAAG
AAGCTCGCATATCAAGGGCACTCGTACTGGCTGAGAAGGCTGCCAAGCGG
TGGCAGAGGCGAAGACGGCAAGGCTTGCACGGCAACGGCGGCGGCAACAC
CGAGCCGCACAACAACGGCGGCAACCGCTGCTATCCGCGAGGGTGACGGC
AGCTCGGAGTTTCCGGACTCGGTGGGCCCTTACGAGGAGGAGGGGGACGA
CGAGTGTCCGCTGTTGGAGGCCTGGTTCTCAGGGGATCCGCAGGAGGAAG
CTTGCACGGCAACGGCGGCGGCAACACCGAGCCGCACAACAACGGCGGCA
ACCGCTGCTATCCGCGAGGGTGACGGCAGCTCGGAGTTTCCGGACTCGGT
GGGCCCTTACGAGGAGGAGGGGGACGACGAGTGTCCGCTGTTGGAGGCCT
GGTTCTCAGGGGATCCGCAGGAGGAA
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