mRNA_L-elsbetiae_contig839.17390.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig839.17390.1 vs. uniprot
Match: A0A6H5L1Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y8_9PHAE) HSP 1 Score: 233 bits (593), Expect = 5.980e-69 Identity = 175/371 (47.17%), Postives = 215/371 (57.95%), Query Frame = 1
Query: 1 RKRPQPCQTQVVVPVAFNLRLGCGDAAFVLAEMLRHILFMRGQLPMPYNQLLQARQRRTLLCIMHVLNEREYRDVIAREEKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNRGARAKSERPLAKASVHRRARKCLGALEETTLAIEEAFADAAGKGRPVLEALVLLGTSHLSPREMYSITFAEPPSPDGSLPGQDGGLQARGEGCHNSGRTGGXXXXXXSIGVQGKSSLAEAYSRKLVRSVVGEMSSVTFRGLGSCRVHLFLRVADAPLV-VAEVSALQPHTYIPIGTKAPNNDGANTARSPSXXXXXXXXPSPISLAATTALHRLVPRPGFKIRVSRSRPAPKVKNTTSK 1110
RKR P Q +V VPV F LG GDAA V+ E+LRH+LFMRGQLPMP+ QL++ VL+ERE RD + R XXXXXXXXXXX R R +AKS RPLAKA HRRARK L AL ETTLA+EEAFADAA KGRPVLEALVLLG SHLSPRE+YS+TF+ GS D +++ N+ +G ++GKSSLA+AYSR LVRS+VG+MSS+ RGLGSCRVHLFLR+A+ P+ + + + T + + + A+TA + S S + + + RL PRPGFKIR+SRSRPAPKV SK
Sbjct: 25 RKRQHPEQQEVTVPVVFKQHLGSGDAAHVVIEVLRHVLFMRGQLPMPFQQLVK------------VLDEREERDEVDRXXXXXXXXXXXXXXXXXAREGRGRTREGGDALGSGLTGAVD----------RRRSKKAKSGRPLAKAPPHRRARKGLRALAETTLAVEEAFADAARKGRPVLEALVLLGASHLSPREIYSVTFS------GSC--LDESSESKDTTTRNTASSG---------DLRGKSSLADAYSRTLVRSMVGKMSSMPLRGLGSCRVHLFLRIAEGPVQDLCTAAPVANETMVEASSTLTSKTMASTASTRSSVNSGGSN-STGPPSGNSIVQRLTPRPGFKIRISRSRPAPKVSIVLSK 355
BLAST of mRNA_L-elsbetiae_contig839.17390.1 vs. uniprot
Match: D7FJH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH5_ECTSI) HSP 1 Score: 192 bits (488), Expect = 6.410e-55 Identity = 141/289 (48.79%), Postives = 167/289 (57.79%), Query Frame = 1
Query: 1 RKRPQPCQTQVVVPVAFNLRLGCGDAAFVLAEMLRHILFMRGQLPMPYNQLLQARQRRTLLCIMHVLNEREYRDVIAREEKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNRGARAKSERPLAKASVHRRARKCLGALEETTLAIEEAFADAAGKGRPVLEALVLLGTSHLSPREMYSITFAEPPSPDGSLPGQDGGLQARGEGCHNSGRTGGXXXXXXSIGVQGKSSLAEAYSRKLVRSVVGEMSSVTFRGLGSCRVHLFLRVADAPL 867
RKR P Q +V VPV F L GDAA V+ E+LRH+LFMRGQLPMP+ QL++ VL+ERE XXXXXXXXX R R +AKS RPLAKA HRRARK L AL ETTLA+EEAFADAA KGRPVLEALVLLG SHLSPR++YS+TF SL D +++ N+ G V+GKS+LA+AYSR LVRS+VG+MSS+ RGLGSCRVHLFLR+A+ P+
Sbjct: 25 RKRQHPEQLEVTVPVVFKQHLRSGDAAHVVIEVLRHVLFMRGQLPMPFQQLVK------------VLDEREEXXXXXXXXXXXXXXXXXXXXXAREGRGRTREGGDALGSGLTETVG------------RRRSKKAKSGRPLAKAPPHRRARKSLRALAETTLAVEEAFADAARKGRPVLEALVLLGASHLSPRKIYSVTFT-----GSSL---DESSESKDTATRNTASGG---------DVRGKSNLADAYSRTLVRSMVGKMSSMPLRGLGSCRVHLFLRIAEGPV 272 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig839.17390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig839.17390.1 >prot_L-elsbetiae_contig839.17390.1 ID=prot_L-elsbetiae_contig839.17390.1|Name=mRNA_L-elsbetiae_contig839.17390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=375bp RKRPQPCQTQVVVPVAFNLRLGCGDAAFVLAEMLRHILFMRGQLPMPYNQback to top mRNA from alignment at L-elsbetiae_contig839:6371..12638+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig839.17390.1 ID=mRNA_L-elsbetiae_contig839.17390.1|Name=mRNA_L-elsbetiae_contig839.17390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6268bp|location=Sequence derived from alignment at L-elsbetiae_contig839:6371..12638+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig839:6371..12638+ >mRNA_L-elsbetiae_contig839.17390.1 ID=mRNA_L-elsbetiae_contig839.17390.1|Name=mRNA_L-elsbetiae_contig839.17390.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2250bp|location=Sequence derived from alignment at L-elsbetiae_contig839:6371..12638+ (Laminarionema elsbetiae ELsaHSoW15)back to top |