mRNA_L-elsbetiae_contig12044.1729.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12044.1729.1
Unique NamemRNA_L-elsbetiae_contig12044.1729.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12044.1729.1 vs. uniprot
Match: D8LMW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW6_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 5.430e-69
Identity = 123/149 (82.55%), Postives = 132/149 (88.59%), Query Frame = 1 
Query:    1 TDAGAGG-VVDGSSSVAALGLGNGDFLYVKSDSAARSAAKAKLEALERMKAAA-GAKASGSKFVPFPDHARPPPPRATKRIKNWQDLEAMQAQTFSLKPQKDSNAKKISVEESAMDDFVGYLKQTGLGKHRCALLFGRVSPTTNGIKVE 441
            TDA AG    DG++SVAALGLGNGDFLYVKSDSAAR+AAKAK +AL RMKAA  G K  GSKFVPFP HARPPPPRATKR+K WQD+EAMQAQTFSLKPQKDSN KKISVE+SAMDDFVGYLKQTGL KHRCALLFGRVSP+TNG+K E
Sbjct:  124 TDASAGSSTADGATSVAALGLGNGDFLYVKSDSAARAAAKAKSDALGRMKAAVVGDKTGGSKFVPFPQHARPPPPRATKRVKTWQDIEAMQAQTFSLKPQKDSNVKKISVEQSAMDDFVGYLKQTGLRKHRCALLFGRVSPSTNGVKRE 272
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12044.1729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMW6_ECTSI5.430e-6982.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12044contigL-elsbetiae_contig12044:2992..5297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNuclear pore localisation protein NPL4
Ec32 orthologEc-02_003900.1
Exons4
Model size588
Cds size585
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12044.1729.1prot_L-elsbetiae_contig12044.1729.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12044 2992..5295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815404.4475803-CDS-L-elsbetiae_contig12044:2991..30781622815404.4475803-CDS-L-elsbetiae_contig12044:2991..3078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 2992..3078 +
1691682883.1393979-CDS-L-elsbetiae_contig12044:2991..30781691682883.1393979-CDS-L-elsbetiae_contig12044:2991..3078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 2992..3078 +
1622815404.4596748-CDS-L-elsbetiae_contig12044:3677..37961622815404.4596748-CDS-L-elsbetiae_contig12044:3677..3796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 3678..3796 +
1691682883.1570456-CDS-L-elsbetiae_contig12044:3677..37961691682883.1570456-CDS-L-elsbetiae_contig12044:3677..3796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 3678..3796 +
1622815404.4717567-CDS-L-elsbetiae_contig12044:4241..43881622815404.4717567-CDS-L-elsbetiae_contig12044:4241..4388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 4242..4388 +
1691682883.171086-CDS-L-elsbetiae_contig12044:4241..43881691682883.171086-CDS-L-elsbetiae_contig12044:4241..4388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 4242..4388 +
1622815404.4851906-CDS-L-elsbetiae_contig12044:5063..52951622815404.4851906-CDS-L-elsbetiae_contig12044:5063..5295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 5064..5295 +
1691682883.1812959-CDS-L-elsbetiae_contig12044:5063..52951691682883.1812959-CDS-L-elsbetiae_contig12044:5063..5295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 5064..5295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12044.1729.1

>prot_L-elsbetiae_contig12044.1729.1 ID=prot_L-elsbetiae_contig12044.1729.1|Name=mRNA_L-elsbetiae_contig12044.1729.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
TDAGAGGVVDGSSSVAALGLGNGDFLYVKSDSAARSAAKAKLEALERMKA
AAGAKASGSKFVPFPDHARPPPPRATKRIKNWQDLEAMQAQTFSLKPQKD
SNAKKISVEESAMDDFVGYLKQTGLGKHRCALLFGRVSPTTNGIKVEAMY
EPPQKQQQQQQQPGGGGTYDSSALTEAARVAVAAAAAAQDENGGG
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mRNA from alignment at L-elsbetiae_contig12044:2992..5297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12044.1729.1 ID=mRNA_L-elsbetiae_contig12044.1729.1|Name=mRNA_L-elsbetiae_contig12044.1729.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2306bp|location=Sequence derived from alignment at L-elsbetiae_contig12044:2992..5297+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGATGCGGGGGCTGGCGGCGTCGTCGACGGCTCGTCGTCGGTGGCGGC
TCTGGGGCTAGGGAACGGGGACTTCTTGTACGTCAAGGTGTGCATGTTCG
CTGCGGCTTGAGACGCGGCGGGCAGCTTGTGGCGCAACCACCTTGCACCC
ATGGTGTGCTGCAATGCTTGACCGTCTGTGGTGGGGCGGACTGGGACTCC
GGCGAACTGGTAGATGTTAGGCCGGCTCCGGAGGAGTGGACCACCCGCTG
TTGGCCCACTTCTGCTGCCGACTCTGCTCCTGTAGAAGGCGTTGTTTCCT
CATGCAGCAGCTAGTTAGAGTACGTCGCTTGACGCACGAAAATTAACTTC
ATTAGGTGTCCTCGCACATCAGACTCCCGCCGGCCTCTTCCCTGGGCTTG
AACTCAGCCATTTTCGTGTCGTGCGCATCTGACCCGGTTGTTTGCATTTT
TTTTTTTTACTTCGAAAGTACTCCGATGTACATATTTACATGTGATGCAC
ATCGCACAGCGCGTTCAACTCCGCTGCCAGCTTTTTTTGTGTAGCTCCAC
ACGCGCCCCGAACCATTCGCGGATCTCTTTTTCGTTCAACTCCCGGCCTT
TTTTTTGTCCTCCAAGGCGCGACCGCATGCACCCTCCTCCATTTGTCTTC
GCGCGCACGTTTTTACTCGGCGTTGATAATTCCCAGAGCGATTCGGCCGC
ACGGTCCGCGGCAAAGGCAAAGCTGGAGGCCTTGGAAAGGATGAAGGCGG
CGGCGGGCGCAAAGGCCAGCGGGAGCAAGTTTGTCCCGTTTCCCGACCAC
GCTAGGTGCGATCTGCAGGATTCGCGTGCTTTGGTGCTGCAGCGGTAGCT
GTGCTCGGTCCGGGTGCAGTACGCCCCTCGGAAGTGTCCTGTTGTTACTG
CTGCTACATACATACGGCTGCCACGGTGTGTTGGGTTTGTAGGTTTGCCT
GGCGTGTTTGCGCGAAATCGTGGCTCTGTGTCCTCTTCAGTCGGTGCGGT
GTGCGGCGATACGTACTAAATTAGCATAGTTCTCGTGACCAAGGCAGGAC
AGTTTTTTTTTCTGTCGGGGTTGTCTTCTCTGGCCGATGGGTGTGTTTTG
AAGATGTTGGCGAGCCTTGCTGTTTCGGGTTAGATTCTGCCTCCTCCAAA
ACCTTCCAGCATTGGACCGCCCACCCGACAACGCGGGTTTGTTGTCGCTT
TCCTCGAAAAAAACAAAAAAAAACACCCCAAATCTACCCCCCAAACGCAG
GCCCCCGCCGCCACGCGCGACGAAGCGCATCAAGAACTGGCAAGACCTCG
AGGCCATGCAGGCGCAGACGTTCTCCCTCAAGCCCCAGAAGGACTCGAAC
GCCAAGAAGATCAGCGTCGAGGAGTCCGCCATGGATGACTTCGTCGGGTG
AGCGAAAGAGATGCGTTGCCTGAATCCTCTAAAAGTCCAAAGGCACGTAT
TTTCAGCCACCATGCTTTGTCGTATGCTTTGTGCTTAGAATTCGCGCGTG
TGAGCCTATTCACACCACGGAAAGCAGTAGGTAGCGATTTCAGTGACTGG
TTCGGAGAGGTAATATTCCCCAGTTACTCAGTAGGGGCTAAGACTGCTTG
AAGAGGCGTACTGGCGACGTCTAAGCTCCAAGTTTGGTTGTGAAGCAATC
AGAAATATCGTGCGCGCGCGTTTGTCGGCGGCAGGCGTGCCGCCTCTTCT
TTTGTGGGTTGTTGTGATATGTCTTTTCCATATACGTGTTTCTCCTATTT
TTGTGCTGATCTTGTGCGCGCTTGTGTACTTTGATGTAGATCTATCCCCC
ACCGCATTGTGTCATTTACACACCGTATCGTTTGCACACCAGCTCTTGCC
AGGAGCGCCCCTGCCCCGACCCCACAGCGCGGCACCTCCTTTCCACCTTC
GGTATCCGCCCTGTGACATATTCCCCGAGCGAGCGATCACTGCACGTTCT
TCCTTATCGCCGCTCTTTGGTGATTCGCAGCAGTGCTGTCGTGCAAGCCC
CCTGCCCTGATAACCCCCGCCCCCCTGGTTACAAAATCGTGGGCGTGTGC
ATGCCGCCCGAAACCCATGTAGGTATCTAAAGCAGACGGGCTTGGGGAAG
CACCGGTGCGCCCTGCTCTTCGGCAGGGTGAGCCCGACCACAAACGGTAT
CAAGGTGGAGGCGATGTACGAGCCCCCGCAGAAGCAACAGCAGCAGCAGC
AGCAGCCGGGCGGAGGCGGCACGTACGATTCGTCCGCGTTGACGGAGGCT
GCCAGGGTGGCGGTGGCGGCGGCGGCTGCTGCGCAGGACGAGAACGGGGG
CGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12044:2992..5297+

>mRNA_L-elsbetiae_contig12044.1729.1 ID=mRNA_L-elsbetiae_contig12044.1729.1|Name=mRNA_L-elsbetiae_contig12044.1729.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig12044:2992..5297+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGATGCGGGGGCTGGCGGCGTCGTCGACGGCTCGTCGTCGGTGGCGGC
TCTGGGGCTAGGGAACGGGGACTTCTTGTACGTCAAGACAGATGCGGGGG
CTGGCGGCGTCGTCGACGGCTCGTCGTCGGTGGCGGCTCTGGGGCTAGGG
AACGGGGACTTCTTGTACGTCAAGAGCGATTCGGCCGCACGGTCCGCGGC
AAAGGCAAAGCTGGAGGCCTTGGAAAGGATGAAGGCGGCGGCGGGCGCAA
AGGCCAGCGGGAGCAAGTTTGTCCCGTTTCCCGACCACGCTAGAGCGATT
CGGCCGCACGGTCCGCGGCAAAGGCAAAGCTGGAGGCCTTGGAAAGGATG
AAGGCGGCGGCGGGCGCAAAGGCCAGCGGGAGCAAGTTTGTCCCGTTTCC
CGACCACGCTAGGCCCCCGCCGCCACGCGCGACGAAGCGCATCAAGAACT
GGCAAGACCTCGAGGCCATGCAGGCGCAGACGTTCTCCCTCAAGCCCCAG
AAGGACTCGAACGCCAAGAAGATCAGCGTCGAGGAGTCCGCCATGGATGA
CTTCGTCGGGCCCCCGCCGCCACGCGCGACGAAGCGCATCAAGAACTGGC
AAGACCTCGAGGCCATGCAGGCGCAGACGTTCTCCCTCAAGCCCCAGAAG
GACTCGAACGCCAAGAAGATCAGCGTCGAGGAGTCCGCCATGGATGACTT
CGTCGGGTATCTAAAGCAGACGGGCTTGGGGAAGCACCGGTGCGCCCTGC
TCTTCGGCAGGGTGAGCCCGACCACAAACGGTATCAAGGTGGAGGCGATG
TACGAGCCCCCGCAGAAGCAACAGCAGCAGCAGCAGCAGCCGGGCGGAGG
CGGCACGTACGATTCGTCCGCGTTGACGGAGGCTGCCAGGGTGGCGGTGG
CGGCGGCGGCTGCTGCGCAGGACGAGAACGGGGGCGGCGTATCTAAAGCA
GACGGGCTTGGGGAAGCACCGGTGCGCCCTGCTCTTCGGCAGGGTGAGCC
CGACCACAAACGGTATCAAGGTGGAGGCGATGTACGAGCCCCCGCAGAAG
CAACAGCAGCAGCAGCAGCAGCCGGGCGGAGGCGGCACGTACGATTCGTC
CGCGTTGACGGAGGCTGCCAGGGTGGCGGTGGCGGCGGCGGCTGCTGCGC
AGGACGAGAACGGGGGCGGC
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