mRNA_L-elsbetiae_contig12044.1728.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12044.1728.1
Unique NamemRNA_L-elsbetiae_contig12044.1728.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12044.1728.1 vs. uniprot
Match: D8LMW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW6_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 4.240e-8
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:  331 LTLRVRMPDGAVKRVKATAADTVDGIMSKLGMAGGXXXXGE 453
            LTLRVRMPDGAVKRVKAT ADT+DGI+ KLGM  G    GE
Sbjct:   80 LTLRVRMPDGAVKRVKATGADTIDGILGKLGMEKGDGGSGE 120
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12044.1728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMW6_ECTSI4.240e-875.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12044contigL-elsbetiae_contig12044:2304..2982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionNuclear pore localisation protein NPL4
Ec32 orthologEc-02_003900.1
Exons2
Model size454
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815404.4005032-CDS-L-elsbetiae_contig12044:2303..23851622815404.4005032-CDS-L-elsbetiae_contig12044:2303..2385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 2304..2385 +
1691682883.1078715-CDS-L-elsbetiae_contig12044:2303..23851691682883.1078715-CDS-L-elsbetiae_contig12044:2303..2385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 2304..2385 +
1622815404.4174523-CDS-L-elsbetiae_contig12044:2611..29821622815404.4174523-CDS-L-elsbetiae_contig12044:2611..2982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 2612..2982 +
1691682883.1244104-CDS-L-elsbetiae_contig12044:2611..29821691682883.1244104-CDS-L-elsbetiae_contig12044:2611..2982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12044 2612..2982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12044.1728.1prot_L-elsbetiae_contig12044.1728.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12044 2304..2982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12044.1728.1

>prot_L-elsbetiae_contig12044.1728.1 ID=prot_L-elsbetiae_contig12044.1728.1|Name=mRNA_L-elsbetiae_contig12044.1728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
PLAHPRGPRRCVVPIFGTPVSHPSSSTGMALARMETRTHERQRRQRRQRP
DHPTQPQQPTPRLPHSSSTTRRSKRRRPCATFASLSLLVAACLCLWVQGV
AGAAGPGAASLTLRVRMPDGAVKRVKATAADTVDGIMSKLGMAGGGGGGG
E
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mRNA from alignment at L-elsbetiae_contig12044:2304..2982+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12044.1728.1 ID=mRNA_L-elsbetiae_contig12044.1728.1|Name=mRNA_L-elsbetiae_contig12044.1728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=679bp|location=Sequence derived from alignment at L-elsbetiae_contig12044:2304..2982+ (Laminarionema elsbetiae ELsaHSoW15)
CCACTCGCACACCCAAGAGGTCCTCGACGCTGTGTTGTACCTATCTTCGG
GACGCCAGTCTCACATCCTTCTTCTTCCACGGGTAAGTGCCGCCTCACTG
CACAAAAGAAGCACGCATTCACACCTCCTGCGCCAAGTGTCAACCTCGTG
TAGCTCCTTTGTACTCGTCGCATTTCACATGCACCTACCTATCCCTGCCG
GCTCCCAATGGGTAGCTCTAACTCTCTCCGCAGTAGTCCATCCGATTCGC
TGGCTATAGCTCTCTTCGCAAACGCACTCAAAACTCCCTTCGCTTCCAAC
ACACTCAGGAATGGCGCTGGCCAGGATGGAAACTCGGACTCATGAGCGGC
AGCGCCGGCAACGGCGGCAACGGCCTGATCATCCCACCCAACCCCAACAA
CCAACACCACGACTTCCGCATAGCAGCAGCACCACCAGAAGAAGCAAACG
GCGACGGCCTTGCGCCACGTTCGCCTCTCTATCCCTACTGGTAGCCGCCT
GTCTCTGCTTGTGGGTTCAGGGAGTGGCCGGCGCCGCCGGCCCCGGGGCA
GCGTCGCTAACGCTGCGTGTTCGCATGCCGGACGGGGCCGTGAAGCGCGT
CAAGGCAACAGCCGCCGACACGGTCGACGGCATCATGAGCAAGCTCGGGA
TGGCGGGCGGGGGCGGCGGAGGCGGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12044:2304..2982+

>mRNA_L-elsbetiae_contig12044.1728.1 ID=mRNA_L-elsbetiae_contig12044.1728.1|Name=mRNA_L-elsbetiae_contig12044.1728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig12044:2304..2982+ (Laminarionema elsbetiae ELsaHSoW15)
CCACTCGCACACCCAAGAGGTCCTCGACGCTGTGTTGTACCTATCTTCGG
GACGCCAGTCTCACATCCTTCTTCTTCCACGGCCACTCGCACACCCAAGA
GGTCCTCGACGCTGTGTTGTACCTATCTTCGGGACGCCAGTCTCACATCC
TTCTTCTTCCACGGGAATGGCGCTGGCCAGGATGGAAACTCGGACTCATG
AGCGGCAGCGCCGGCAACGGCGGCAACGGCCTGATCATCCCACCCAACCC
CAACAACCAACACCACGACTTCCGCATAGCAGCAGCACCACCAGAAGAAG
CAAACGGCGACGGCCTTGCGCCACGTTCGCCTCTCTATCCCTACTGGTAG
CCGCCTGTCTCTGCTTGTGGGTTCAGGGAGTGGCCGGCGCCGCCGGCCCC
GGGGCAGCGTCGCTAACGCTGCGTGTTCGCATGCCGGACGGGGCCGTGAA
GCGCGTCAAGGCAACAGCCGCCGACACGGTCGACGGCATCATGAGCAAGC
TCGGGATGGCGGGCGGGGGCGGCGGAGGCGGCGAGGAATGGCGCTGGCCA
GGATGGAAACTCGGACTCATGAGCGGCAGCGCCGGCAACGGCGGCAACGG
CCTGATCATCCCACCCAACCCCAACAACCAACACCACGACTTCCGCATAG
CAGCAGCACCACCAGAAGAAGCAAACGGCGACGGCCTTGCGCCACGTTCG
CCTCTCTATCCCTACTGGTAGCCGCCTGTCTCTGCTTGTGGGTTCAGGGA
GTGGCCGGCGCCGCCGGCCCCGGGGCAGCGTCGCTAACGCTGCGTGTTCG
CATGCCGGACGGGGCCGTGAAGCGCGTCAAGGCAACAGCCGCCGACACGG
TCGACGGCATCATGAGCAAGCTCGGGATGGCGGGCGGGGGCGGCGGAGGC
GGCGAG
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