mRNA_L-elsbetiae_contig12025.1718.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12025.1718.1
Unique NamemRNA_L-elsbetiae_contig12025.1718.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12025.1718.1 vs. uniprot
Match: D7G382_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G382_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.690e-16
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 2 
Query:  161 DVSPEQARVELEDLVQSDAGRARFLQALNERRSEATEVTPEAYDALVGTLRVFL 322
            +V+ EQAR ELE LV+S++GR+RFLQ LNERRSEATEVTPEAYDALVGTL VFL
Sbjct:  388 EVTAEQARKELEVLVRSESGRSRFLQVLNERRSEATEVTPEAYDALVGTLEVFL 441
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BLAST of mRNA_L-elsbetiae_contig12025.1718.1 vs. uniprot
Match: A0A6H5JSR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.180e-16
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 2 
Query:  164 VSPEQARVELEDLVQSDAGRARFLQALNERRSEATEVTPEAYDALVGTLRVFL 322
            V+ EQAR ELE LV+S++GR+RFLQ LNERRSEATEVTPEAYDALVGTL VFL
Sbjct:  665 VTAEQARKELEVLVRSESGRSRFLQVLNERRSEATEVTPEAYDALVGTLEVFL 717
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12025.1718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G382_ECTSI1.690e-1679.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSR7_9PHAE3.180e-1681.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12025contigL-elsbetiae_contig12025:4520..5422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size325
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815403.6209126-CDS-L-elsbetiae_contig12025:4519..47571622815403.6209126-CDS-L-elsbetiae_contig12025:4519..4757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12025 4520..4757 +
1691682882.603336-CDS-L-elsbetiae_contig12025:4519..47571691682882.603336-CDS-L-elsbetiae_contig12025:4519..4757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12025 4520..4757 +
1622815403.6315844-CDS-L-elsbetiae_contig12025:5336..54221622815403.6315844-CDS-L-elsbetiae_contig12025:5336..5422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12025 5337..5422 +
1691682882.6118884-CDS-L-elsbetiae_contig12025:5336..54221691682882.6118884-CDS-L-elsbetiae_contig12025:5336..5422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12025 5337..5422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12025.1718.1prot_L-elsbetiae_contig12025.1718.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12025 4520..5422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12025.1718.1

>prot_L-elsbetiae_contig12025.1718.1 ID=prot_L-elsbetiae_contig12025.1718.1|Name=mRNA_L-elsbetiae_contig12025.1718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
REPPPRPDNRWGRRRRRRRRRRGGHVGRRGPRRPWCCGGEGGGGGRGGDS
GCCRRESGAGEGGAGGSCAVRCREGSVSAGVERAEVRGYGSDTGGVRRPC
GDAPGLPR
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mRNA from alignment at L-elsbetiae_contig12025:4520..5422+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12025.1718.1 ID=mRNA_L-elsbetiae_contig12025.1718.1|Name=mRNA_L-elsbetiae_contig12025.1718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=903bp|location=Sequence derived from alignment at L-elsbetiae_contig12025:4520..5422+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGAGCCACCCCCTCGCCCCGACAACCGGTGGGGTCGTCGGCGCCGCCG
CCGCCGCCGCCGCCGTGGAGGCCACGTTGGTCGGCGGGGCCCCCGGAGGC
CCTGGTGCTGTGGCGGAGAAGGCGGGGGGGGCGGCCGGGGCGGCGACAGC
GGCTGTTGTCGACGTGAGTCCGGAGCAGGCGAGGGTGGAGCTGGAGGATC
TTGTGCAGTCCGATGCCGGGAGGGCTCGGTTTCTGCAGGTGGAATGATGG
GGTTGGGTTTGGTACATAGACGCTGTTGGCCCGAATGGGGGGGAGGGGTT
GGTGTTGTTGCTGCCGCCGCCCGCACGTGTCGGCCGGTGTTTTGAGGACC
CGCTCTCTGCTTAGCTTGCTTCTCTGCGGTGTGTATTGTAATCTTGTTTT
GCCATCCGCTTTTTTTATTCCGGCTGGTTTTGCGCACGCTGGTATATGTG
TAGGTGGGCACTTATGTTTTGAAACGAGTGTTTTTTTGGCGTATTTTGTT
GATGTATTGTACCTGGTATTTATGTACAACTTCGTATTTTTTTTTTTTTT
TTTATCGCGGAAAGTCTCTCCGGTGGTGCTCAATTTATCGTCTTTTTGTA
TTATTGCATGCACTGCCTCATGAGGGTAATTGCCCAAGAAGATCGGCTAG
CCTGTTCCAGGGTGTTTCGCCCCCGGGGATTCGGTAGGACCGCGCGGAGT
TAGATCATAAACGTTTGCCCTGTCTGCCCTGTCTGAGTTGTGTGTTCACG
GCCCGCAAAATCGCGGTCCCCATGCGGCCTTACATCCATACCCCCCCCTC
CCCCCCTCGCAACTTAGGCGTTGAACGAGCGGAGGTCCGAGGCTACGGAA
GTGACACCGGAGGCGTACGACGCCCTTGTGGGGACGCTCCGGGTCTTCCT
CGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12025:4520..5422+

>mRNA_L-elsbetiae_contig12025.1718.1 ID=mRNA_L-elsbetiae_contig12025.1718.1|Name=mRNA_L-elsbetiae_contig12025.1718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig12025:4520..5422+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGAGCCACCCCCTCGCCCCGACAACCGGTGGGGTCGTCGGCGCCGCCG
CCGCCGCCGCCGCCGTGGAGGCCACGTTGGTCGGCGGGGCCCCCGGAGGC
CCTGGTGCTGTGGCGGAGAAGGCGGGGGGGGCGGCCGGGGCGGCGACAGC
GGCTGTTGTCGACGTGAGTCCGGAGCAGGCGAGGGTGGAGCTGGAGGATC
TTGTGCAGTCCGATGCCGGGAGGGCTCGGTTTCTGCAGCGAGAGCCACCC
CCTCGCCCCGACAACCGGTGGGGTCGTCGGCGCCGCCGCCGCCGCCGCCG
CCGTGGAGGCCACGTTGGTCGGCGGGGCCCCCGGAGGCCCTGGTGCTGTG
GCGGAGAAGGCGGGGGGGGCGGCCGGGGCGGCGACAGCGGCTGTTGTCGA
CGTGAGTCCGGAGCAGGCGAGGGTGGAGCTGGAGGATCTTGTGCAGTCCG
ATGCCGGGAGGGCTCGGTTTCTGCAGGCGTTGAACGAGCGGAGGTCCGAG
GCTACGGAAGTGACACCGGAGGCGTACGACGCCCTTGTGGGGACGCTCCG
GGTCTTCCTCGAGCGTTGAACGAGCGGAGGTCCGAGGCTACGGAAGTGAC
ACCGGAGGCGTACGACGCCCTTGTGGGGACGCTCCGGGTCTTCCTCGA
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