mRNA_L-elsbetiae_contig12023.1717.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12023.1717.1
Unique NamemRNA_L-elsbetiae_contig12023.1717.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig12023.1717.1 vs. uniprot
Match: D7G6V7_ECTSI (Protein kish n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6V7_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.290e-34
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 2 
Query:  242 QSALFNMVDLLTVLLLLICICTYVRGFRKGIFDVEDGSHSGLRGVCWKAARVGERLSPYVSIALLLMAGHVL 457
             SALF+M DLLTV+LLLIC+CTYVRG+RKGIFDVEDGSHSGLRG+CWKAARVGERLSPYVS ALL+MAG VL
Sbjct:    1 MSALFSMPDLLTVILLLICVCTYVRGYRKGIFDVEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVL 72
[Close]
BLAST of mRNA_L-elsbetiae_contig12023.1717.1 vs. uniprot
Match: A0A835YW34_9STRA (Protein kish n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW34_9STRA)

HSP 1 Score: 103 bits (256), Expect = 8.730e-24
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 2 
Query:  242 QSALFNMVDLLTVLLLLICICTYVRGFRKGIFD--VEDGSHSGLRGVCWKAARVGERLSPYVSIALLLMAGHVLFFAQ 469
             SA+F+   L+TVLLLLIC CTY+RGFR GIFD   E   H+G +G+CWK +R+GER+SPYVS++ LLMA H+LF  Q
Sbjct:    1 MSAIFDFSSLITVLLLLICTCTYLRGFRSGIFDNSAEPHRHTGFKGLCWKFSRIGERISPYVSVSCLLMAVHILFIKQ 78
[Close]
BLAST of mRNA_L-elsbetiae_contig12023.1717.1 vs. uniprot
Match: F0WK68_9STRA (Protein kish n=2 Tax=Albugo TaxID=65356 RepID=F0WK68_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.170e-18
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 2 
Query:  242 QSALFNMVDLLTVLLLLICICTYVRGFRKGIFD--VEDGSHSGLRGVCWKAARVGERLSPYVSIALLLMAGHVLFF 463
             SALF++  L+TV+LL IC C+Y+R     +FD   + G H GL G+CWKA+R+GER SPYV+ AL+LMA H LFF
Sbjct:    1 MSALFSLPGLITVILLFICTCSYIRAKFPTVFDRNQQPGKHEGLSGLCWKASRIGERKSPYVAGALILMALHTLFF 76
[Close]
BLAST of mRNA_L-elsbetiae_contig12023.1717.1 vs. uniprot
Match: F0Y3L9_AURAN (Protein kish n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3L9_AURAN)

HSP 1 Score: 86.7 bits (213), Expect = 1.490e-17
Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = 2 
Query:  242 QSALFNMVDLLTVLLLLICICTYVRGFRKGIFD------------VEDGSHSGLRGVCWKAARVGERLSPYVSIALLLMAGHVLFF 463
             SA+F+   L+TVLLL+IC CTYVR  R  +FD            +     SG+RG CWKA+R+GERLSPYVS+ +  MA H+L F
Sbjct:    1 MSAIFDFSSLVTVLLLIICTCTYVRAMRPSVFDGGLSADDLASPHLSYKRRSGIRGACWKASRIGERLSPYVSVVVAAMAFHILLF 86
[Close]
BLAST of mRNA_L-elsbetiae_contig12023.1717.1 vs. uniprot
Match: K3X7N3_GLOUD (Protein kish n=4 Tax=Pythiaceae TaxID=4782 RepID=K3X7N3_GLOUD)

HSP 1 Score: 84.3 bits (207), Expect = 8.190e-17
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 2 
Query:  242 QSALFNMVDLLTVLLLLICICTYVRGFRKGIFD--VEDGSHSGLRGVCWKAARVGERLSPYVSIALLLMAGHVLFFA 466
             SALF++  L+TV+LL IC CTY+R     IFD   + G H GL G+CWKA+R+GER SPYV+  L++MA H L F+
Sbjct:    1 MSALFSLQGLITVILLFICTCTYIRMKFPTIFDRGQQPGKHEGLSGLCWKASRIGERKSPYVAGVLVVMAFHTLLFS 77
[Close]
BLAST of mRNA_L-elsbetiae_contig12023.1717.1 vs. uniprot
Match: A0A6G0XHW2_9STRA (Protein kish n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHW2_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.220e-16
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 2 
Query:  242 QSALFNMVDLLTVLLLLICICTYVRGFRKGIFD--VEDGSHSGLRGVCWKAARVGERLSPYVSIALLLMAGHVLFFA 466
             +ALFN   +LT+LLL+IC CT++R     IFD   E G H G  G+CWKA+R+GER S YV++ LL MA H L FA
Sbjct:    1 MTALFNFTGMLTMLLLVICTCTFIRMKMPTIFDRGQEPGKHEGFTGLCWKASRIGERKSEYVALMLLAMAVHRLLFA 77
[Close]
BLAST of mRNA_L-elsbetiae_contig12023.1717.1 vs. uniprot
Match: D0NVB3_PHYIT (Protein kish n=18 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB3_PHYIT)

HSP 1 Score: 82.8 bits (203), Expect = 2.990e-16
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 2 
Query:  242 QSALFNMVDLLTVLLLLICICTYVRGFRKGIFDVED--GSHSGLRGVCWKAARVGERLSPYVSIALLLMAGHVLFFA 466
             SALF++  LLTV+LL IC CTY++     +FD     G H GL G+CWKA+R+GER S YV+ AL++MA H LFF+
Sbjct:    1 MSALFSLQGLLTVILLFICTCTYIKMKFPTLFDRGQLPGKHEGLGGLCWKASRIGERKSQYVASALVVMAVHTLFFS 77
[Close]
BLAST of mRNA_L-elsbetiae_contig12023.1717.1 vs. uniprot
Match: B7FZL0_PHATC (Protein kish n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZL0_PHATC)

HSP 1 Score: 82.4 bits (202), Expect = 3.610e-16
Identity = 42/74 (56.76%), Postives = 49/74 (66.22%), Query Frame = 2 
Query:  242 QSALFNMVDLLTVLLLLICICTYVRGFRKGIFDVEDGSHSGLRGVCWKAARVGERLSPYVSIALLLMAGHVLFF 463
             SA+F+   L+TVLLLLIC CTY+R  R GIFD    +  G  G  WK +RVGERLSPYV     LMA H+LFF
Sbjct:    1 MSAIFDFSSLVTVLLLLICTCTYLRELRPGIFDA---AREGFWGFLWKLSRVGERLSPYVGAGCALMAVHILFF 71
[Close]
BLAST of mRNA_L-elsbetiae_contig12023.1717.1 vs. uniprot
Match: A0A024TZQ1_9STRA (Protein kish n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZQ1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.860e-16
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 2 
Query:  242 QSALFNMVDLLTVLLLLICICTYVRGFRKGIFDVED--GSHSGLRGVCWKAARVGERLSPYVSIALLLMAGHVLFFA 466
             +ALFN   +LT++LL+IC CTY+R     IFD     G H G  G+CWKA+R+GER S YV+  LL MA H LFFA
Sbjct:    1 MTALFNFTGMLTMVLLIICTCTYIRLKMPTIFDRGQLPGKHEGFTGLCWKASRIGERKSEYVAALLLAMAVHRLFFA 77
[Close]
BLAST of mRNA_L-elsbetiae_contig12023.1717.1 vs. uniprot
Match: A0A1Z5JCC7_FISSO (Protein kish n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCC7_FISSO)

HSP 1 Score: 82.0 bits (201), Expect = 6.360e-16
Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:  242 QSALFNMVDLLTVLLLLICICTYVRGFRKGIFDV--EDGS----HSGLRGVCWKAARVGERLSPYVSIALLLMAGHVLF 460
             SA+FN   LLTVLLLLIC C Y+R  R GIFD   ++G       GL G  WK +R+GERLSPY+ +   +MA HVLF
Sbjct:    1 MSAIFNFSSLLTVLLLLICTCAYLRELRPGIFDPPRKEGETKLKREGLTGFLWKMSRIGERLSPYIGVGCFIMAIHVLF 79
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12023.1717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6V7_ECTSI1.290e-3486.11Protein kish n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A835YW34_9STRA8.730e-2460.26Protein kish n=1 Tax=Tribonema minus TaxID=303371 ... [more]
F0WK68_9STRA3.170e-1855.26Protein kish n=2 Tax=Albugo TaxID=65356 RepID=F0WK... [more]
F0Y3L9_AURAN1.490e-1748.84Protein kish n=1 Tax=Aureococcus anophagefferens T... [more]
K3X7N3_GLOUD8.190e-1753.25Protein kish n=4 Tax=Pythiaceae TaxID=4782 RepID=K... [more]
A0A6G0XHW2_9STRA2.220e-1653.25Protein kish n=1 Tax=Aphanomyces euteiches TaxID=1... [more]
D0NVB3_PHYIT2.990e-1653.25Protein kish n=18 Tax=Peronosporaceae TaxID=4777 R... [more]
B7FZL0_PHATC3.610e-1656.76Protein kish n=2 Tax=Phaeodactylum tricornutum Tax... [more]
A0A024TZQ1_9STRA5.860e-1653.25Protein kish n=5 Tax=Aphanomyces TaxID=100860 RepI... [more]
A0A1Z5JCC7_FISSO6.360e-1653.16Protein kish n=1 Tax=Fistulifera solaris TaxID=151... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12023contigL-elsbetiae_contig12023:1957..3903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue4.2e-28
Seed eggNOG ortholog2880.D7G6V7
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Protein of unknown function (DUF1242)
EggNOG OGs2E2NW@1,2S9VV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionProtein of unknown function DUF1242
Ec32 orthologEc-01_012070.1
Exons2
Model size1129
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12023.1717.1prot_L-elsbetiae_contig12023.1717.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12023 2614..3827 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815403.5623732-UTR-L-elsbetiae_contig12023:1956..26131622815403.5623732-UTR-L-elsbetiae_contig12023:1956..2613Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12023 1957..2613 -
1691682882.5482614-UTR-L-elsbetiae_contig12023:1956..26131691682882.5482614-UTR-L-elsbetiae_contig12023:1956..2613Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12023 1957..2613 -
1622815403.592416-UTR-L-elsbetiae_contig12023:3827..39031622815403.592416-UTR-L-elsbetiae_contig12023:3827..3903Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12023 3828..3903 -
1691682882.592115-UTR-L-elsbetiae_contig12023:3827..39031691682882.592115-UTR-L-elsbetiae_contig12023:3827..3903Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12023 3828..3903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815403.5728831-CDS-L-elsbetiae_contig12023:2613..27141622815403.5728831-CDS-L-elsbetiae_contig12023:2613..2714Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12023 2614..2714 -
1691682882.5604692-CDS-L-elsbetiae_contig12023:2613..27141691682882.5604692-CDS-L-elsbetiae_contig12023:2613..2714Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12023 2614..2714 -
1622815403.5822713-CDS-L-elsbetiae_contig12023:3532..38271622815403.5822713-CDS-L-elsbetiae_contig12023:3532..3827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12023 3533..3827 -
1691682882.5769746-CDS-L-elsbetiae_contig12023:3532..38271691682882.5769746-CDS-L-elsbetiae_contig12023:3532..3827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12023 3533..3827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12023.1717.1

>prot_L-elsbetiae_contig12023.1717.1 ID=prot_L-elsbetiae_contig12023.1717.1|Name=mRNA_L-elsbetiae_contig12023.1717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MTSFAEGFPHIVHIYIFIFLARINRAVLEESRRDRDTPLPFPAVRVYPFF
MLSRGQSALFNMVDLLTVLLLLICICTYVRGFRKGIFDVEDGSHSGLRGV
CWKAARVGERLSPYVSIALLLMAGHVLFFAQ*
back to top

mRNA from alignment at L-elsbetiae_contig12023:1957..3903-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12023.1717.1 ID=mRNA_L-elsbetiae_contig12023.1717.1|Name=mRNA_L-elsbetiae_contig12023.1717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1947bp|location=Sequence derived from alignment at L-elsbetiae_contig12023:1957..3903- (Laminarionema elsbetiae ELsaHSoW15)
CAGCTGCCCCAGCTCGGGAGTATTTCACACGCTGTGCTGCGCTCTTTGTC
AACGCTCGCGGGCAGGATGGGTCGACATGACCTCATTTGCTGAAGGGTTT
CCACATATTGTGCATATTTATATTTTTATATTTTTGGCAAGGATCAATCG
TGCGGTTTTGGAGGAATCTCGTCGTGATCGTGACACGCCCCTGCCCTTCC
CCGCTGTGCGCGTGTACCCCTTTTTTATGCTATCCCGTGGACAGTCGGCG
CTCTTTAATATGGTCGATCTCCTCACGGTGCTGCTGCTGTTGATATGCAT
CTGCACCTACGTCAGGGGCTTCCGCAAAGGGATTTTCGATGTTGAGGATG
GTTCACACAGCGGCTTGCGAGGTGACCGCGCCCAGCACCCAAACGTAGAG
CTATGTTTATACTCCTGTGCACTCCTTGATGCCCCAGTACAACAAGTGTC
TTTCAGAGCTTTCATGCGAGACTTTGAGCTCGCTTGGTCTACAAACGAAA
ACTTGTGTGGAACCTCGCCAATGAATGGAGTGAGATCTTTGTGTCTATAT
ACCGTATATAACTGGTTGTGGCGGTGATGAGGATGAGGTTGAGGATCCAA
CCTTGTGGCGCAACTATCGAACCACGTCTAATTTCGGTTGTCAGCTCGTA
GCAATCGTTTGCCACACCAAGGTGCTCCTATGTTGGTGTTGTCTTCGTGT
GCGTGTCATCCCCCTCCCCCCCCCATATTGTGCGGTATGGTGTTGCGTTT
TGCCCCCAAACAATGCAGTTTCTGTTAGCACGAGAAAGTAAAGAATTGCG
GCACACACCTTGACGTGGCTCTCAAAAAAGCCTGCTACAGCGCCACAACT
GTTTTGCGTGCGTACGATGGCATATGTATGTACGTACTCTCCTTCAATTT
TTTACCTGCTGACATCCGATGTTCAACCCAGCTTATTTAAAAGGCACTCT
TTGGTACTCGGGTTATAGGGAATAGTACTAGGTACATGTAGCGGTGAGAG
TATGAGCGAGGTGTATTCAACGTCGCTGCCATGCACATCCAGTGGATTAT
CTTGCATGGACTCGCGTGGAGCAGCATGCAACACCATTGAAGTTGCACCG
CTTCTCCATATCGGACGTTTTGCCTCAACCTCACCGCCTTCCTTTCTACC
GGCCGTTCCGAACGCCCCCGGTCCGACTACTGTCCTCAGGCGTGTGCTGG
AAGGCAGCCAGGGTGGGAGAGCGATTAAGCCCTTACGTCTCTATCGCGTT
GCTACTCATGGCGGGACACGTTCTCTTTTTTGCCCAATAGAGTTTTTTGT
ACTGGCACCTGTAATATAGTGCTGCTGCAGCAGCCGGGGTTTGATGGGAG
CAAGTGTTATATTGTTAGCCGCAGCCAGTAGCAAGAAAGCAGGGGGTACA
TTGGATATACCGTTTCTGTACTGTATGTAGTCTTGTAAATGGCTGGAACG
TTTTCAAACGAGAACGTAGATGGCCTATTCATTTGTGTAGGATGAAGGAT
TTCTGCACGTTGGGAACTTCTGAACTGAGAGAAGATGCTGTACAAGCAAG
GGTTTAGTGCTAGCGGTGTAGCCGCTTTTGTTGTATCGTGTCCTAGGTGC
CTTCATCCGTCGAAGTCTTGGTGGAATACTGAATCTTCTTGTTGGAGGTC
TTACAATATGAGACCTGTCTGCTGCGCCATTTCGTGCAGCCCGTCCTAGG
AATCAACTACGCGTATTTTGAGTTGAATTGCCGTCTTGGTGGGTTCGGAA
CCTGTCGTCCTCTTGTCATTTTGTCGACAAAAACGCTAACACGGGGGTGC
GAACCTTCGCACACTTACGGCACCGTTGTGGAGAAATACGCTATAGAAAA
ACGCTAACACGGGGGACGTCCATTCCAACAGAAGCCTCTCACTTACTTGT
GAAGAGCGAGTCGTCTGCTCGCTAGAGTACACAACTAGAAGGTCCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12023:1957..3903-

>mRNA_L-elsbetiae_contig12023.1717.1 ID=mRNA_L-elsbetiae_contig12023.1717.1|Name=mRNA_L-elsbetiae_contig12023.1717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig12023:1957..3903- (Laminarionema elsbetiae ELsaHSoW15)
ATGACCTCATTTGCTGAAGGGTTTCCACATATTGTGCATATTTATATTTT
TATATTTTTGGCAAGGATCAATCGTGCGGTTTTGGAGGAATCTCGTCGTG
ATCGTGACACGCCCCTGCCCTTCCCCGCTGTGCGCGTGTACCCCTTTTTT
ATGCTATCCCGTGGACAGTCGGCGCTCTTTAATATGGTCGATCTCCTCAC
GGTGCTGCTGCTGTTGATATGCATCTGCACCTACGTCAGGGGCTTCCGCA
AAGGGATTTTCGATGTTGAGGATGGTTCACACAGCGGCTTGCGAGATGAC
CTCATTTGCTGAAGGGTTTCCACATATTGTGCATATTTATATTTTTATAT
TTTTGGCAAGGATCAATCGTGCGGTTTTGGAGGAATCTCGTCGTGATCGT
GACACGCCCCTGCCCTTCCCCGCTGTGCGCGTGTACCCCTTTTTTATGCT
ATCCCGTGGACAGTCGGCGCTCTTTAATATGGTCGATCTCCTCACGGTGC
TGCTGCTGTTGATATGCATCTGCACCTACGTCAGGGGCTTCCGCAAAGGG
ATTTTCGATGTTGAGGATGGTTCACACAGCGGCTTGCGAGGCGTGTGCTG
GAAGGCAGCCAGGGTGGGAGAGCGATTAAGCCCTTACGTCTCTATCGCGT
TGCTACTCATGGCGGGACACGTTCTCTTTTTTGCCCAATAGGCGTGTGCT
GGAAGGCAGCCAGGGTGGGAGAGCGATTAAGCCCTTACGTCTCTATCGCG
TTGCTACTCATGGCGGGACACGTTCTCTTTTTTGCCCAATAG
back to top