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Homology
BLAST of mRNA_L-elsbetiae_contig12022.1716.1 vs. uniprot
Match: A0A6H5JRN5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRN5_9PHAE) HSP 1 Score: 407 bits (1045), Expect = 4.120e-131 Identity = 208/249 (83.53%), Postives = 219/249 (87.95%), Query Frame = 1
Query: 10 KAIDGADTGEGPAGVTLPVLESEEQELDRHLYHGTKAGYRTDMSVELWLDSLGLGSLAEAFFAAGYQDFLVIQEMGLTDIDLAYIGVKNAAQRKALKMAAGGFVELMLQVQISGFFNYNSELVYRVDSKWRYLRASTFFEFSDFEDLHKRLKMAMKDTKFHKMMPSLPARPNSKKTGLDHAGQARRDASAGGSLQQELNGYMQKLVMLVGTKEPYFTVLCGMLDLLPQDASRLPTRDTDILSQMQSRAA 756
+AID ADTGEGPAGVTLP L+S EQELD LYHGTKA YRTDMSVE WLDS GLGSLAEAF AAGYQDFLVIQEMGLTD+DLAYIGVKN A RKALKMAAGGFVELMLQV+ISG+FN+NSELVYRVDSKWRYLRASTFFEFSDFEDL +RLKMAM+DTKFHKMMP LPARPNSKK G DHAGQ R LQQELN YMQKLVMLVGTKEPYFTVLCGMLDLLP D SRLP R+ DIL+QMQ+R A
Sbjct: 625 EAIDCADTGEGPAGVTLPSLDSGEQELDHLLYHGTKAAYRTDMSVEAWLDSRGLGSLAEAFLAAGYQDFLVIQEMGLTDVDLAYIGVKNPAHRKALKMAAGGFVELMLQVEISGYFNFNSELVYRVDSKWRYLRASTFFEFSDFEDLRRRLKMAMRDTKFHKMMPPLPARPNSKKIGSDHAGQMAR-------LQQELNSYMQKLVMLVGTKEPYFTVLCGMLDLLPPDPSRLPARNNDILAQMQTRVA 866
BLAST of mRNA_L-elsbetiae_contig12022.1716.1 vs. uniprot
Match: A0A835ZKA0_9STRA (LISK family protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKA0_9STRA) HSP 1 Score: 228 bits (582), Expect = 8.320e-65 Identity = 127/258 (49.22%), Postives = 162/258 (62.79%), Query Frame = 1
Query: 10 KAIDGADTGEG-----------PAGVTLPVLESEEQELDRHLYHGTKAGYRTDMSVELWLDSLGLGSLAEAFFAAGYQDFLVIQEMGLTDIDLAYIGVKNAAQRKALKMAAGGFVELMLQVQISGFFNYNSELVYRVDSKWRYLRASTFFEFSDFEDLHKRLKMAMKDTKFHKMMPSLPARPNS---KKTGLDHAGQARRDASAGGSLQQELNGYMQKLVMLVGTKEPYFTVLCGMLDLLPQDASRLPTRDTDILSQM 741
A+D ADTGEG G + ES E + + + WL ++GL LA AF AGY D L+IQEMG+ DL +IGVK+ +R+ LKMAA G +E +L V++SGFFN+ +ELVYR+DS+WR+LRASTFF F DFE+LH+++K AMKDTK+ K+MPSLP RP K +DHA Q R LQQ L+ YMQKL LVGTKEP+FT+LCG LDLLP D RLP R D L+++
Sbjct: 512 NAMDAADTGEGLPPKLENALASVTGTGISRRESVEGGVGGRGERVVSISLNSIIPKGFWLATVGLTHLAPAFEQAGYTDMLLIQEMGINSEDLNFIGVKSKTERRLLKMAARGVIERLLVVRVSGFFNFGAELVYRLDSRWRFLRASTFFRFQDFEELHRKVKAAMKDTKYSKLMPSLPTRPTQSVLKLGSIDHAAQMAR-------LQQALHSYMQKLTTLVGTKEPFFTMLCGHLDLLPPDPLRLPERSDDFLAKV 762
BLAST of mRNA_L-elsbetiae_contig12022.1716.1 vs. uniprot
Match: A0A836CKQ6_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKQ6_9STRA) HSP 1 Score: 187 bits (476), Expect = 1.760e-53 Identity = 101/249 (40.56%), Postives = 147/249 (59.04%), Query Frame = 1
Query: 1 NYLKAIDGADTGEGPAGVTLPVLESEEQELDRHLYHGTKAGYRTDMSVELWLDSLGLGSLAEAFFAAGYQDFLVIQEMGLTDIDLAYIGVKNAAQRKALKMAAGGFVELMLQVQISGFFNYNSELVYRVDSKWRYLRASTFFEFSDFEDLHKRLKMAMKDTKFHKMMPSLPARPNSKKTGLDHAGQARRDASAGGSLQQELNGYMQKLVMLVGTKEPYFTVLCGMLDLLPQDASRLPTRDTDILSQMQS 747
N + A D T PA T P+ + + +VE WL SL L L F +AGY D L+IQE+GL D AY+G+ A+R+ L AA G L +SGFF+++ E V+RV+S+WR+LRA T+F FEDLHK++K AM+DTK+ K++PSLP +P L + +A + A LQQ L+ Y+Q++ +VGTKEP+FT+LCG L++LP D RLP R ++++++ S
Sbjct: 59 NSINAADTGKTARAPAS-TAPLPHRQ-------------GAFMLHQTVEQWLASLKLDHLLPTFISAGYTDMLMIQELGLNRDDFAYLGITGKAERRVLAAAARGVASGALTAGVSGFFSFDRETVFRVESQWRFLRAYTYFSLQSFEDLHKKMKGAMRDTKYAKILPSLPPKPAQPLLSLGNVDRAAQMAQ----LQQALHRYIQRVTAVVGTKEPFFTLLCGFLEILPWDERRLPDRSAELIAKITS 289
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 78.2 |
| Seed ortholog evalue | 8.6e-12 |
| Seed eggNOG ortholog | 2880.D7G911 |
| KEGG ko | ko:K04427,ko:K20717,ko:K20718 |
| KEGG Pathway | ko04010,ko04013,ko04016,ko04064,ko04140,ko04152,ko04214,ko04310,ko04380,ko04520,ko04620,ko04621,ko04622,ko04624,ko04657,ko04660,ko04668,ko05140,ko05145,ko05162,ko05168,ko05169,ko05418,map04010,map04013,map04016,map04064,map04140,map04152,map04214,map04310,map04380,map04520,map04620,map04621,map04622,map04624,map04657,map04660,map04668,map05140,map05145,map05162,map05168,map05169,map05418 |
| KEGG Module | M00686,M00688,M00689 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | protein kinase activity |
| EggNOG OGs | COG0515@1,KOG0192@2759 |
| Ec32 ortholog description | RasGEF domain-containing protein |
| Ec32 ortholog | Ec-11_002800.1 |
| EC | 2.7.11.1,2.7.11.25 |
| COG Functional cat. | KLT |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01001 |
| Exons | 5 |
| Model size | 1056 |
| Cds size | 1056 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815403.4875257-CDS-L-elsbetiae_contig12022:2361..2830 | 1622815403.4875257-CDS-L-elsbetiae_contig12022:2361..2830 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12022 2362..2830 - |
| 1691682882.497448-CDS-L-elsbetiae_contig12022:2361..2830 | 1691682882.497448-CDS-L-elsbetiae_contig12022:2361..2830 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12022 2362..2830 - |
| 1622815403.5003564-CDS-L-elsbetiae_contig12022:3533..3745 | 1622815403.5003564-CDS-L-elsbetiae_contig12022:3533..3745 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12022 3534..3745 - |
| 1691682882.5094433-CDS-L-elsbetiae_contig12022:3533..3745 | 1691682882.5094433-CDS-L-elsbetiae_contig12022:3533..3745 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12022 3534..3745 - |
| 1622815403.5111275-CDS-L-elsbetiae_contig12022:4074..4221 | 1622815403.5111275-CDS-L-elsbetiae_contig12022:4074..4221 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12022 4075..4221 - |
| 1691682882.5194309-CDS-L-elsbetiae_contig12022:4074..4221 | 1691682882.5194309-CDS-L-elsbetiae_contig12022:4074..4221 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12022 4075..4221 - |
| 1622815403.5213408-CDS-L-elsbetiae_contig12022:4634..4745 | 1622815403.5213408-CDS-L-elsbetiae_contig12022:4634..4745 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12022 4635..4745 - |
| 1691682882.5298653-CDS-L-elsbetiae_contig12022:4634..4745 | 1691682882.5298653-CDS-L-elsbetiae_contig12022:4634..4745 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12022 4635..4745 - |
| 1622815403.5305865-CDS-L-elsbetiae_contig12022:5239..5356 | 1622815403.5305865-CDS-L-elsbetiae_contig12022:5239..5356 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12022 5240..5356 - |
| 1691682882.5387735-CDS-L-elsbetiae_contig12022:5239..5356 | 1691682882.5387735-CDS-L-elsbetiae_contig12022:5239..5356 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12022 5240..5356 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12022.1716.1 >prot_L-elsbetiae_contig12022.1716.1 ID=prot_L-elsbetiae_contig12022.1716.1|Name=mRNA_L-elsbetiae_contig12022.1716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=352bp
NYLKAIDGADTGEGPAGVTLPVLESEEQELDRHLYHGTKAGYRTDMSVEL WLDSLGLGSLAEAFFAAGYQDFLVIQEMGLTDIDLAYIGVKNAAQRKALK MAAGGFVELMLQVQISGFFNYNSELVYRVDSKWRYLRASTFFEFSDFEDL HKRLKMAMKDTKFHKMMPSLPARPNSKKTGLDHAGQARRDASAGGSLQQE LNGYMQKLVMLVGTKEPYFTVLCGMLDLLPQDASRLPTRDTDILSQMQSR AAAGGRRGGAGAGGGADGGSATQNGGSGRKSSGLLSSTGRKSSRSSFSGT GGGGSSRGNTNRSSSRPSSLRKASPSTRSRGSGDSGGVGGSGGGSSSTAV A* back to topmRNA from alignment at L-elsbetiae_contig12022:2362..5356- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig12022.1716.1 ID=mRNA_L-elsbetiae_contig12022.1716.1|Name=mRNA_L-elsbetiae_contig12022.1716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2995bp|location=Sequence derived from alignment at L-elsbetiae_contig12022:2362..5356- (Laminarionema elsbetiae ELsaHSoW15) AATTACCTCAAGGCGATCGACGGCGCGGACACAGGGGAGGGCCCCGCCGG
AGTGACGTTGCCGGTGCTCGAGTCGGAGGAGCAGGAGTTGGATCGCCACC
TCTACCACGGGACGAAGGTAGGTTTCGGTTTTAAAAGGAGTGCCGAATCG
GCTTCGGCCTCAAGGCTTCGGCCTCGAGATTTGTTGGTGGTCGCATTCCA
ACCCTGCGTGGCTTGTCGCTTTTTTTGAAGTCGTGAGGTTGCGTGAAGTG
AAGTCAAGGGGTGTCGGCCGCTTTTGTGTTCCATATGGGACGGTGGAAGA
ATTGAGTATTGTTCCTTCTTCCGCGCGTTTTCTGTTTGTGGCCAATGGAC
TGGCACCACAACAATAATGGTGCGGTGCACTTTGTTGACGATGCCGGGGG
AGCGAAGCGCATTCATAACCCCGCGGTTGTTACCTCCCTTCTAAGTTGTA
CGTTGACTGGGTACCCCAACACCACTACAGCAGTAGCGCAGGCATGACCT
GTCGCTCGCACAAAAACAGACGCACTCATCGATTTACTTGCTGTGCCGTG
TGTTCCAACTGGTGTTGCAACTGGCGCTGCATCTGTTGGTATGGTGTGGT
GGGGTGTACAGGCGGGTTACCGAACAGATATGTCGGTGGAGTTGTGGCTG
GACTCACTGGGGCTCGGATCTTTGGCAGAGGCGTTCTTCGCTGCGGGGTA
TCAGGACTTCCTTGTGATTCAGGTATGCGGGCATGTTTTTTGGATGTTGT
ACATGAGTTCAATGGGCAAACCCTTGAGTGGGGTGGTGACTTGTGGATAC
GCAAAGCTGGTTGTTTCCGGGGTCCAGAAGTTGGTTGGGGGGAGGGGAGG
CTAAAAGGCTACATGACTTGAAAGGAGCATGCAAATTTACCGAATGAGCG
AGGCGAAAAAAATTCTGCATCTGAGCCAACCATGTCTGCTTGCTCCTATG
TGGTGTGCTGCTGCTGCTGCTGCTGCTGCTGCTTTGTTGACGGCGGACCT
TGACCGGGGCGGCCGCCGACGGCCTTCGTTTGCCGATATATATATTTTTT
TTTCTCATTTCGTGTTGTCGTTTTTTCCTGTGCTGCATTTCCGTTTTTTT
CGTTGGTGACGTTATGGTGGGTGACGTCATCGTAGGAGATGGGCCTTACG
GACATCGACCTCGCCTACATCGGCGTGAAGAACGCGGCGCAGAGAAAAGC
CCTCAAGATGGCGGCGGGGGGATTCGTCGAGCTGATGCTTCAGGTCCAGA
TCAGCGGCTTCTTCAACTACAACTCCGAGTTGGTGAGAACGAGCAAAGCG
GAAAGCACTTGAGCCTCCGGTGAAGATGTTGATTTTGAGCCCCAACAGAC
TGCCGTGTCGGTAATATCACTGGCGTCCAAACCCATCCGCCGATGGCGGA
GCAATCACGGGGTCCCTCCCCTTCGAAGGTCACAGCGTTCCCCAAGAATG
GATCGGTCTAAGGGTGGTACGATCTCTCTGCCTCCCTTTCTCTCATCTCA
GATGGAATGGTTGTCGCACGTACAAACACAAGATCTAAGTGTTTGCTGGC
TGAACCCCCTGGCTCACTGGCTCTTCCTCTCTCGCCATGTTGGTTCTTTC
GTATTTGACAGGTTTACCGGGTCGACAGCAAGTGGCGATATCTAAGGGCC
TCCACTTTCTTCGAGTTCTCGGACTTCGAAGACCTGCACAAGCGGCTCAA
GATGGCGATGAAGGACACCAAGTTTCACAAGATGATGCCGTCCTTGCCCG
CGCGGCCGAACAGCAAGAAGACGGGACTTGACCACGCGGGACAGGCAAGA
AGAGACGCCTCCGCGGGGGGTTCGTTTACGTTTCTCGTGTTTCGTTGTTC
CCAACCCTTCTTCCCTGTTGCAGAAAAAAAGCCGCCGATGGCCCAATCGA
TTGATAGGTGGACCGGTTTAAGAATGGGCGGGCATACCCAATTCCATCGT
GCCCGCGCTGGGGACGGCGTTTGAGTGGATTTTTTTTTTACTTCTTTTCT
GCAAATGCCAGCTGTCTACGTCCAACCCGTGGAAAGGTCGTTTCAGGGGG
ACTGTTGTTGACGCACTACAGTAACCCTCACCGTCCCAGCTGCAGGCACA
TGATCCGCAATCCGTTTGTATTTAGTTGGCTGGTTAAAAAAATCATTTAA
AGCGTCTGCCGTAGAATGTTAAGCGCGTGTGTGTGTCCGCTCTCTTGCCC
GTCTGTACCCCCAAACGCGTTATTGTTTCTCAGGAGCATTACCGAAGCCA
ATGGCCCCGCCGTGCGCATGCAACCCTTTTCCGTTTAGCATCCGTAGCGA
AAGTGGAACAGCAGTGCATGCCGAAGATACTTCTACATAATTAGGCATAA
CTGTGCATCGAAATTTTGTTTGTTGGTCTTCCCTCTTCAGGATTTTGTTT
TGCAAAAACGCTACATGGAATTAGCCTGTAACTTCAGCTGCAGCGCCCTG
GTTACCCCGAGTTGCTCTCCTAACCGCAACACGCCTCCTTTTTTGTCGAC
GGCAATTTATAACAACAGATGGCGAGGCTGCAGCAGGAGCTCAACGGCTA
CATGCAGAAGCTGGTGATGCTGGTGGGCACCAAGGAGCCGTACTTCACGG
TGCTCTGCGGCATGCTCGACCTCCTGCCGCAGGACGCGAGCCGGTTGCCC
ACGAGAGACACGGACATCCTGTCGCAGATGCAGAGCCGCGCCGCAGCCGG
CGGCCGGAGGGGGGGCGCCGGCGCAGGAGGAGGGGCGGACGGGGGCTCGG
CCACTCAAAACGGCGGTAGCGGGAGGAAGTCGTCGGGGCTGCTGTCGTCG
ACGGGCAGGAAGTCCAGCCGATCTTCATTCTCGGGCACTGGAGGCGGTGG
TAGCAGCAGAGGCAACACCAATAGAAGCAGTAGCAGGCCATCATCGCTCC
GGAAGGCCTCGCCGTCGACGCGGAGTCGGGGGAGCGGGGACTCGGGGGGG
GTTGGCGGCAGCGGGGGTGGCAGCTCCTCGACGGCTGTAGCGTAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig12022:2362..5356- >mRNA_L-elsbetiae_contig12022.1716.1 ID=mRNA_L-elsbetiae_contig12022.1716.1|Name=mRNA_L-elsbetiae_contig12022.1716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2112bp|location=Sequence derived from alignment at L-elsbetiae_contig12022:2362..5356- (Laminarionema elsbetiae ELsaHSoW15) AATTACCTCAAGGCGATCGACGGCGCGGACACAGGGGAGGGCCCCGCCGG AGTGACGTTGCCGGTGCTCGAGTCGGAGGAGCAGGAGTTGGATCGCCACC TCTACCACGGGACGAAGAATTACCTCAAGGCGATCGACGGCGCGGACACA GGGGAGGGCCCCGCCGGAGTGACGTTGCCGGTGCTCGAGTCGGAGGAGCA GGAGTTGGATCGCCACCTCTACCACGGGACGAAGGCGGGTTACCGAACAG ATATGTCGGTGGAGTTGTGGCTGGACTCACTGGGGCTCGGATCTTTGGCA GAGGCGTTCTTCGCTGCGGGGTATCAGGACTTCCTTGTGATTCAGGCGGG TTACCGAACAGATATGTCGGTGGAGTTGTGGCTGGACTCACTGGGGCTCG GATCTTTGGCAGAGGCGTTCTTCGCTGCGGGGTATCAGGACTTCCTTGTG ATTCAGGAGATGGGCCTTACGGACATCGACCTCGCCTACATCGGCGTGAA GAACGCGGCGCAGAGAAAAGCCCTCAAGATGGCGGCGGGGGGATTCGTCG AGCTGATGCTTCAGGTCCAGATCAGCGGCTTCTTCAACTACAACTCCGAG TTGGAGATGGGCCTTACGGACATCGACCTCGCCTACATCGGCGTGAAGAA CGCGGCGCAGAGAAAAGCCCTCAAGATGGCGGCGGGGGGATTCGTCGAGC TGATGCTTCAGGTCCAGATCAGCGGCTTCTTCAACTACAACTCCGAGTTG GTTTACCGGGTCGACAGCAAGTGGCGATATCTAAGGGCCTCCACTTTCTT CGAGTTCTCGGACTTCGAAGACCTGCACAAGCGGCTCAAGATGGCGATGA AGGACACCAAGTTTCACAAGATGATGCCGTCCTTGCCCGCGCGGCCGAAC AGCAAGAAGACGGGACTTGACCACGCGGGACAGGCAAGAAGAGACGCCTC CGCGGGGGGTTCGTTTACCGGGTCGACAGCAAGTGGCGATATCTAAGGGC CTCCACTTTCTTCGAGTTCTCGGACTTCGAAGACCTGCACAAGCGGCTCA AGATGGCGATGAAGGACACCAAGTTTCACAAGATGATGCCGTCCTTGCCC GCGCGGCCGAACAGCAAGAAGACGGGACTTGACCACGCGGGACAGGCAAG AAGAGACGCCTCCGCGGGGGGTTCGCTGCAGCAGGAGCTCAACGGCTACA TGCAGAAGCTGGTGATGCTGGTGGGCACCAAGGAGCCGTACTTCACGGTG CTCTGCGGCATGCTCGACCTCCTGCCGCAGGACGCGAGCCGGTTGCCCAC GAGAGACACGGACATCCTGTCGCAGATGCAGAGCCGCGCCGCAGCCGGCG GCCGGAGGGGGGGCGCCGGCGCAGGAGGAGGGGCGGACGGGGGCTCGGCC ACTCAAAACGGCGGTAGCGGGAGGAAGTCGTCGGGGCTGCTGTCGTCGAC GGGCAGGAAGTCCAGCCGATCTTCATTCTCGGGCACTGGAGGCGGTGGTA GCAGCAGAGGCAACACCAATAGAAGCAGTAGCAGGCCATCATCGCTCCGG AAGGCCTCGCCGTCGACGCGGAGTCGGGGGAGCGGGGACTCGGGGGGGGT TGGCGGCAGCGGGGGTGGCAGCTCCTCGACGGCTGTAGCGTAGGCTGCAG CAGGAGCTCAACGGCTACATGCAGAAGCTGGTGATGCTGGTGGGCACCAA GGAGCCGTACTTCACGGTGCTCTGCGGCATGCTCGACCTCCTGCCGCAGG ACGCGAGCCGGTTGCCCACGAGAGACACGGACATCCTGTCGCAGATGCAG AGCCGCGCCGCAGCCGGCGGCCGGAGGGGGGGCGCCGGCGCAGGAGGAGG GGCGGACGGGGGCTCGGCCACTCAAAACGGCGGTAGCGGGAGGAAGTCGT CGGGGCTGCTGTCGTCGACGGGCAGGAAGTCCAGCCGATCTTCATTCTCG GGCACTGGAGGCGGTGGTAGCAGCAGAGGCAACACCAATAGAAGCAGTAG CAGGCCATCATCGCTCCGGAAGGCCTCGCCGTCGACGCGGAGTCGGGGGA GCGGGGACTCGGGGGGGGTTGGCGGCAGCGGGGGTGGCAGCTCCTCGACG GCTGTAGCGTAG back to top
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