mRNA_L-elsbetiae_contig12010.1712.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12010.1712.1
Unique NamemRNA_L-elsbetiae_contig12010.1712.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12010.1712.1 vs. uniprot
Match: A0A6H5JN17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN17_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 6.880e-102
Identity = 134/158 (84.81%), Postives = 151/158 (95.57%), Query Frame = 1 
Query:    1 KKKVGLKFWRMVRSGAIGALNNGLVHYSYYKWIDGRFPYDKFSEKRFGPADGAKSKLAVGFSKWAIEWPTIGVYKIASMYILTAILSGNMKGLWARLQDSFFLTWLRSLQVWPIYDMILYAYVPTAHRPLFNSFMSIAWGGYLSHVSQPHEGEGDEDE 474
            +K +GLKFWRM RSG IGALNNGLVHYSYYKWIDGRFPYDKF+EKR+GP DGAKSKLAVGF+KWA+EWPTIG+YKIASMY+LTA+LSG+ KGLW R+QDS FLTW+RSLQVWPIYDMILYAYVPTAHRPLFNSFMSIAWGGYLSHVSQPH+G+G+E++
Sbjct:   24 QKVIGLKFWRMARSGIIGALNNGLVHYSYYKWIDGRFPYDKFTEKRWGPKDGAKSKLAVGFTKWALEWPTIGLYKIASMYVLTAVLSGSTKGLWERVQDSLFLTWIRSLQVWPIYDMILYAYVPTAHRPLFNSFMSIAWGGYLSHVSQPHKGDGEEED 181
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BLAST of mRNA_L-elsbetiae_contig12010.1712.1 vs. uniprot
Match: D7FVM5_ECTSI (Protein required for ethanol metabolism n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM5_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 2.440e-99
Identity = 135/158 (85.44%), Postives = 151/158 (95.57%), Query Frame = 1 
Query:    1 KKKVGLKFWRMVRSGAIGALNNGLVHYSYYKWIDGRFPYDKFSEKRFGPADGAKSKLAVGFSKWAIEWPTIGVYKIASMYILTAILSGNMKGLWARLQDSFFLTWLRSLQVWPIYDMILYAYVPTAHRPLFNSFMSIAWGGYLSHVSQPHEGEGDEDE 474
            +K +GLKFWRM RSG IGALNNGLVHYSYYKWIDGRFPYDKF+EKR+GP DGAKSKLAVGF+KWA+EWPTIG+YKIASMY+LTA+LSG+ KGLW RLQDS FLTW+RSLQVWPIYDMILYAYVPTAHRPLFNSFMSIAWGGYLSHVSQPH+G+G+E++
Sbjct:  233 QKVIGLKFWRMARSGIIGALNNGLVHYSYYKWIDGRFPYDKFTEKRWGPKDGAKSKLAVGFTKWALEWPTIGLYKIASMYVLTAVLSGSTKGLWERLQDSLFLTWIRSLQVWPIYDMILYAYVPTAHRPLFNSFMSIAWGGYLSHVSQPHKGDGEEED 390
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BLAST of mRNA_L-elsbetiae_contig12010.1712.1 vs. uniprot
Match: W7TJZ2_9STRA (Protein required for ethanol metabolism n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJZ2_9STRA)

HSP 1 Score: 211 bits (536), Expect = 4.580e-64
Identity = 105/161 (65.22%), Postives = 124/161 (77.02%), Query Frame = 1 
Query:    4 KKVGLKFWRMVRSGAIGALNNGLVHYSYYKWIDGRFPYDKFSEKRFGPADGAKSKLAVGFSKWAIEWPTIGVYKIASMYILTAILSGN--MKGLWARLQDSFF----LTWLRSLQVWPIYDMILYAYVPTAHRPLFNSFMSIAWGGYLSHVSQPHEGEGDE 468
            K+VG+K WR VRSG IGALNNGLVHYSYYK+ID RFPY  F+E+RFG  +G   KL V ++K+ IEWPTIGVYKIASM +LTA L G    +  +A++ + F     LTWLRSLQVWPIYD ILYAYVP +HRPLFN+FMSIAWGGYLSH+SQ    +G E
Sbjct:  168 KRVGVKAWRAVRSGLIGALNNGLVHYSYYKYIDRRFPYHLFTEERFGKPEGTYYKLCVAWAKYWIEWPTIGVYKIASMMVLTAALDGRNGWRKRFAKIPEKFRKRFRLTWLRSLQVWPIYDTILYAYVPASHRPLFNTFMSIAWGGYLSHISQVEGEDGGE 328
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BLAST of mRNA_L-elsbetiae_contig12010.1712.1 vs. uniprot
Match: A0A836CEJ0_9STRA (Protein required for ethanol metabolism n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEJ0_9STRA)

HSP 1 Score: 207 bits (526), Expect = 8.660e-63
Identity = 92/147 (62.59%), Postives = 114/147 (77.55%), Query Frame = 1 
Query:    7 KVGLKFWRMVRSGAIGALNNGLVHYSYYKWIDGRFPYDKFSEKRFGPADGAKSKLAVGFSKWAIEWPTIGVYKIASMYILTAILSGNMKGLWARLQDSFFLTWLRSLQVWPIYDMILYAYVPTAHRPLFNSFMSIAWGGYLSHVSQP 447
            K+G    R  ++G IGALNNGLVH++YYKWID  FPY KF+  R+GP DG K KL V ++K+ +EWPTIGVYKIAS + LTA+++ ++K L  +    F LTWLRSLQVWP+YD   YAY+PT HRPLFN+FMSIAWGGYLSH+SQP
Sbjct:  233 KIGYSLARAAKAGVIGALNNGLVHFTYYKWIDRHFPYHKFTVDRWGPKDGTKYKLIVAWTKYWLEWPTIGVYKIASSFALTALMNNDLKALPEKFSKRFMLTWLRSLQVWPLYDTFAYAYIPTDHRPLFNTFMSIAWGGYLSHISQP 379
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BLAST of mRNA_L-elsbetiae_contig12010.1712.1 vs. uniprot
Match: A0A7J7QD23_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QD23_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 8.430e-5
Identity = 25/82 (30.49%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:  226 IASMYILTAILSGN-MKGLWARLQDSFFLTWLRSLQVWPIYDMILYAYVPTAHRPLFNSFMSIAWGGYLSHVSQPHEGEGDE 468
            I   +   +++ GN M+  WA  ++ F  T + +  +WP+ +++ +A+VP A R L+ + + I W  YLS ++  ++G+GDE
Sbjct:   62 IGLFFCAMSVMEGNSMQEAWASTKEKFKPTMMANYMLWPVANLVNFAFVPPAQRILYCNVVYIFWASYLSAMAS-NKGDGDE 142
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12010.1712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JN17_9PHAE6.880e-10284.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM5_ECTSI2.440e-9985.44Protein required for ethanol metabolism n=1 Tax=Ec... [more]
W7TJZ2_9STRA4.580e-6465.22Protein required for ethanol metabolism n=2 Tax=Mo... [more]
A0A836CEJ0_9STRA8.660e-6362.59Protein required for ethanol metabolism n=1 Tax=Tr... [more]
A0A7J7QD23_9CHLO8.430e-530.49Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12010contigL-elsbetiae_contig12010:3601..5782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size483
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12010.1712.1prot_L-elsbetiae_contig12010.1712.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12010 3601..5752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815403.16752-CDS-L-elsbetiae_contig12010:3600..37531622815403.16752-CDS-L-elsbetiae_contig12010:3600..3753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12010 3601..3753 -
1691682882.3112526-CDS-L-elsbetiae_contig12010:3600..37531691682882.3112526-CDS-L-elsbetiae_contig12010:3600..3753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12010 3601..3753 -
1622815403.1804824-CDS-L-elsbetiae_contig12010:4656..47611622815403.1804824-CDS-L-elsbetiae_contig12010:4656..4761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12010 4657..4761 -
1691682882.320408-CDS-L-elsbetiae_contig12010:4656..47611691682882.320408-CDS-L-elsbetiae_contig12010:4656..4761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12010 4657..4761 -
1622815403.1929119-CDS-L-elsbetiae_contig12010:5557..57521622815403.1929119-CDS-L-elsbetiae_contig12010:5557..5752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12010 5558..5752 -
1691682882.3290813-CDS-L-elsbetiae_contig12010:5557..57521691682882.3290813-CDS-L-elsbetiae_contig12010:5557..5752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12010 5558..5752 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815403.2026708-UTR-L-elsbetiae_contig12010:5752..57821622815403.2026708-UTR-L-elsbetiae_contig12010:5752..5782Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12010 5753..5782 -
1691682882.3398273-UTR-L-elsbetiae_contig12010:5752..57821691682882.3398273-UTR-L-elsbetiae_contig12010:5752..5782Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12010 5753..5782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12010.1712.1

>prot_L-elsbetiae_contig12010.1712.1 ID=prot_L-elsbetiae_contig12010.1712.1|Name=mRNA_L-elsbetiae_contig12010.1712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
MVRSGAIGALNNGLVHYSYYKWIDGRFPYDKFSEKRFGPADGAKSKLAVG
FSKWAIEWPTIGVYKIASMYILTAILSGNMKGLWARLQDSFFLTWLRSLQ
VWPIYDMILYAYVPTAHRPLFNSFMSIAWGGYLSHVSQPHEGEGDEDEKS
*
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mRNA from alignment at L-elsbetiae_contig12010:3601..5782-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12010.1712.1 ID=mRNA_L-elsbetiae_contig12010.1712.1|Name=mRNA_L-elsbetiae_contig12010.1712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2182bp|location=Sequence derived from alignment at L-elsbetiae_contig12010:3601..5782- (Laminarionema elsbetiae ELsaHSoW15)
AAAAAAAAGGTCGGGCTTAAGTTCTGGAGGATGGTCCGCAGCGGGGCCAT
CGGGGCCCTCAACAACGGGCTTGTGCACTACAGCTACTACAAGTGGATCG
ACGGGCGCTTCCCGTACGACAAGTTCTCCGAGAAGAGGTTCGGGCCGGCG
GACGGGGCCAAGTCCAAGCTGGCGGTGGGGTTCAGCAAGTGGGCGATCGA
GTGGCCGACCATCGGCGTGTACAAGGTAATTGGTATTTGGTATTTAGGAA
AGAGGGGGCGGAGAGAACGCATGTACAGGCACAACAATTAAGGGAGTAAT
TGCGTGCGTTATCATTGTCAAGATACAAGCGAACGCTCGCGCGCGCCCCT
CCGGCTGCCCCCCCTTAACAGCTCTTTTTGAGAATTGGGGGCTCTATTGC
AGAAAGCCTAGATATATGCGCACGCACGGCTGCTGGCTGTCTGTCTGTCT
GTCTTTCTGCCTGCGTGCCCGCCTGCCTTCCTGCATGCCTGCATGCATGC
CTGACTGTCTGTTTGTCTGTGTGTCTGTCTGTGTGTCTTTCTGTCTGTCT
TGTCTTGTCTGTCTGTCTCGTCTGCCTGACTAAAATCTATCTGTCGGGGT
GACCTCTGGTGACGTGTGTGTACATGAGGAAGAGGCAGGGAAAAGACGAG
ACCGCTGTAGATCGGTGGCTTGGTTCCTTTTTTAGGCGAGGTACATGTCT
GTCTGCATAAATATGAGGTGGGGGTGCTTGTTCAAGAAGGAGAGTAGTTT
GTCGTGCCGTGATTCCCGTGTATTCAGTGTTGGTGGTTGTGTGAATCGCG
TTTTTTTGGGGGTGCTTTTTCGCGAGCAAACACTATAAATATCACTACCG
GTTGGCCTTGCAGTGAGACGACGTCCAGGTCTCAAGAGGGCTGGGTGCGG
GAAGAATCCTGTGCTGTGCATGATGGAGGGCTAATTGATGGAAAGGCGCT
CACGTCTTGGTCGTTCTTGACCGGCTCGGTACATTCCTGTTGCTTTCGTT
TTCTTTTGTTGTTTGTGACAGATCGCGTCGATGTACATCCTCACGGCGAT
CCTGAGCGGAAACATGAAGGGGCTCTGGGCGCGGCTGCAGGACAGCTTCT
TCCTGACATGGCTGCGCTCTTTGCAGGTACTGTCATGTGGTAATTGTTTT
TCATTCCGCCGCACGCACCATCCATCGCCGTGACACACACACACACACAC
ACGTGCATACCTACATACGTGTACCGCTGATTGTTGTGGTGACACATTGA
CCCTCGGACCAACGGGAGTTAGCTACATACTGCTGCAGTTGGCCACATTG
GTAGGATTGGGTGTGCGTAAAAGTTGACGGGAGGTAAATGCCATACATAG
TCTACAATAACGCCGGCCGGGAGTGCTGCGCTGCAATTTTGTTCAGCGGG
TGCCACGCTTGCTACAGGCCCCCGTCGCGCGCCGCAGGGTACGACTAGAA
CCCTCCGTGTCATGTCTACTCTGTACGCTATTATAGTGATTATTCTATCT
ACCGCACAAAGTCCTCGTCGGTGTTTCGGCCCTGCCATGCGTACCAAAGA
CGGTTAATTTACGCTCTTGACAAGCAAGACAAAGAGGGCGGAGACAGACA
CAGACACACACACACACACACACACACACACACACACGCACACACACACA
CATGTACATGAATCGTCGCACACCGGCCTTTGTTTCCCGAACGAAGGGAG
CACGTTTTCCGCTTTCTGCCGGCGGCCGGCAGAGCGTTCTTTACCGCCCG
CGTGTTTGTATTTTCGTGTACGCACCCCAGCTCTGTACCGCCTGCGTGTT
TCATGTTTGCCCTCGGTGTTCGCGCGGCCTTCCCTCACGACCTTCCATAA
AATAAATAAACCCGATCTCGCACTCCTGCTGTCCGTGCGGCGAAATCTGA
CCAATCAATTGATGCCTCCCCCCCCCCCCCCTTCCCCCCCCCCCGTCCTC
GACGGAAACCGATCTTGTATTTTTTTTCGTGTGTTTTTTGTATTCGTGAT
TTTTGTTGCCATCATTAACGTCCGACAAGGTTTGGCCGATCTACGACATG
ATCCTGTACGCCTACGTGCCGACCGCGCACCGACCTCTCTTCAACTCCTT
CATGTCCATCGCCTGGGGGGGCTACCTGAGCCACGTGAGCCAGCCCCACG
AGGGCGAGGGCGACGAGGATGAGAAGTCTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12010:3601..5782-

>mRNA_L-elsbetiae_contig12010.1712.1 ID=mRNA_L-elsbetiae_contig12010.1712.1|Name=mRNA_L-elsbetiae_contig12010.1712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig12010:3601..5782- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCCGCAGCGGGGCCATCGGGGCCCTCAACAACGGGCTTGTGCACTA
CAGCTACTACAAGTGGATCGACGGGCGCTTCCCGTACGACAAGTTCTCCG
AGAAGAGGTTCGGGCCGGCGGACGGGGCCAAGTCCAAGCTGGCGGTGGGG
TTCAGCAAGTGGGCGATCGAGTGGCCGACCATCGGCGTGTACAAGATGGT
CCGCAGCGGGGCCATCGGGGCCCTCAACAACGGGCTTGTGCACTACAGCT
ACTACAAGTGGATCGACGGGCGCTTCCCGTACGACAAGTTCTCCGAGAAG
AGGTTCGGGCCGGCGGACGGGGCCAAGTCCAAGCTGGCGGTGGGGTTCAG
CAAGTGGGCGATCGAGTGGCCGACCATCGGCGTGTACAAGATCGCGTCGA
TGTACATCCTCACGGCGATCCTGAGCGGAAACATGAAGGGGCTCTGGGCG
CGGCTGCAGGACAGCTTCTTCCTGACATGGCTGCGCTCTTTGCAGATCGC
GTCGATGTACATCCTCACGGCGATCCTGAGCGGAAACATGAAGGGGCTCT
GGGCGCGGCTGCAGGACAGCTTCTTCCTGACATGGCTGCGCTCTTTGCAG
GTTTGGCCGATCTACGACATGATCCTGTACGCCTACGTGCCGACCGCGCA
CCGACCTCTCTTCAACTCCTTCATGTCCATCGCCTGGGGGGGCTACCTGA
GCCACGTGAGCCAGCCCCACGAGGGCGAGGGCGACGAGGATGAGAAGTCT
TAAGTTTGGCCGATCTACGACATGATCCTGTACGCCTACGTGCCGACCGC
GCACCGACCTCTCTTCAACTCCTTCATGTCCATCGCCTGGGGGGGCTACC
TGAGCCACGTGAGCCAGCCCCACGAGGGCGAGGGCGACGAGGATGAGAAG
TCTTAA
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