mRNA_L-elsbetiae_contig1201.1711.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1201.1711.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI) HSP 1 Score: 127 bits (319), Expect = 5.490e-30 Identity = 102/294 (34.69%), Postives = 129/294 (43.88%), Query Frame = 1
Query: 460 CVPEYSGDGFCDTENNNASCGFDGGDCCEDSCVDGPNHICNEVIDD---AGGFNCLDPNFGQEMMCTPDVEGIRAGVACCPVSCGLCGGDGCGTRDSGSEQFSATEACCSGAETGVRSLGRDCSSTEAPCIVTEEEDGDTDGVTPVGPGLXXXXXXXXXXXXPEASPDSPCLPEYS--------------GDGFCDTENNNASCGFDGGDCCEESCVDGPNHICNEVIDDAGGFNCLDPNIACFPEYS---------------GDGFCDTDQNIASCGFDGGDCCEASC-VDGP 1242
C P GDG+CD ENNN CG+DGGDCCE +CV N DD A C+DP+ C D + + + +CG G G G D + + E C G G DC E C + +DG TD G G P++PC+ + G+GFCD +NNN +C +DGGDCCE +C D PN C GF C+DP C E S G+G+CD D NI C +DGGDCCE +C V GP
Sbjct: 56 CFPREFGDGWCDQENNNEICGYDGGDCCECTCV-------NAWDDDYSCAANSACIDPSAP----CVDD-DDVTVDMV---ENCGYVGSVGNGWCD----EENNNEGC------GYD--GGDC--CECTCQPLDTDDG-TDDYFQNGCGNGFACI----------DPNAPCVNDDDITLDIVENCDSVAVGNGFCDMDNNNEACAYDGGDCCECTCEDQPNQECGRW----SGFACIDPEAPCVDEDSFTVDMVESCKYPGSFGNGWCDEDNNIEECAYDGGDCCECTCEVRGP 305
BLAST of mRNA_L-elsbetiae_contig1201.1711.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 130 bits (327), Expect = 5.940e-29 Identity = 96/265 (36.23%), Postives = 123/265 (46.42%), Query Frame = 1
Query: 478 GDGFCDTENNNASCGFDGGDCCEDSCVDGPNHICNEVIDDAGGFNCLDPNFGQEMMCTPD--VEGIRAGVACCPVSCGLCGGDGCGTRDSGSEQFSATEACCSGAETGVRSLGRDCSSTEAPCIVTEEEDGDTDGVTPVGPGLXXXXXXXXXXXXPEASPDSPCLPEYSGDGFCDTENNNASCGFDGGDCCEESCVDGPNHICNEVIDDAGGFNCLDPN------IACFPEYS------GDGFCDTDQNIASCGFDGGDCCEASC 1230
G+G CD N SCG+DGGDCC +CVDGP H C+ F+C+ P+ G C D +G V P SC GGD C +C G + G S+G C + C T E A ++ C + DG+CD+ NN SC +DGGDCCE SCVDG ++ C + GF+CLDP +A FP+ GDGFCD++ N ASCG+DGGDCC SC
Sbjct: 37 GNGQCDAVLNVPSCGYDGGDCCPCTCVDGPTHSCS-----TSDFDCMYPDCGGSE-CHEDWAKDGFCDLVNNHP-SCDYDGGDCCEC------------SCIDGPDYGCGSIGFAC--LDPDCGNTTET----------------------------APENTTCEESWMNDGYCDSSNNYPSCDYDGGDCCECSCVDGHDYECG-----SNGFSCLDPACFDPALVAEFPDCDAGWLGLGDGFCDSELNTASCGWDGGDCCVCSC 247
BLAST of mRNA_L-elsbetiae_contig1201.1711.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 121 bits (303), Expect = 1.580e-26 Identity = 93/280 (33.21%), Postives = 123/280 (43.93%), Query Frame = 1
Query: 454 SPCVPEYSGDGFCDTENNNASCGFDGGDCCEDSCVD---GPNH-ICNEVIDDAGGFNCLDPNFGQEMMCTPDVEGIRAGVACCPVSCGLCGGDGCGTRDSGSEQFSATEACCSGAETGVRSLGRDCSSTEAPCIVTEEEDGDTDGVTPVGPGLXXXXXXXXXXXXPEASPD--SPCLPEYSGDGFCDTENNNASCGFDGGDCCEESCVDGPNHICNEVIDDAGGFNCLDPNIACFPEYS---------------GDGFCDTDQNIASCGFDGGDCCEASC 1230
S C GDG+C NNNA CG+DGGDCCE +C + G +H IC++ + GF C+DP+ D + A C D D +Q + E C G G DC E C V ++D D D G G + + D C GDG+CD +NNNA+C +DGGDCCE +C PN+ C GF C+DP C + S G+G+CD + N C +DGGDCCE +C
Sbjct: 29 SGCWDALYGDGYCTPPNNNAECGYDGGDCCECTCQNPQGGDHHWICSK---NGSGFACVDPDAPCY---AEDGVTVEASQEC----------DFWDLGDGWCDQVNNNELC------GYD--GGDC--CECTCEVPTDDDWDNDLYVACGEGFACIDPSAPCVNDDDITVDVDESCDAVGMGDGYCDMDNNNAACAYDGGDCCECTCE--PNNKCGG----RSGFACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTC 276
BLAST of mRNA_L-elsbetiae_contig1201.1711.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 112 bits (279), Expect = 6.160e-23 Identity = 91/292 (31.16%), Postives = 119/292 (40.75%), Query Frame = 1
Query: 460 CVPEYSGDGFCDTENNNASCGFDGGDCCEDSCVDGPNHICNEVIDD--------AGGFNCLDPNFGQEMMCTPDVEGIRAGVACCPVSCGLCGGDGCGTRDSGSEQFSATEACCSGAETGVRSLGRDCSSTEAPCIVTEEED------------GDTDGVTPVGPGLXXXXXXXXXXXXPEASPDSPCLPEYSGDGFCDTENNNASCGFDGGDCCEESCVDGPNHICNEVIDDAGGFNCLDPNIAC---------------FPEYSGDGFCDTDQNIASCGFDGGDCCEASC 1230
C GDG+CD +NNN CG+DGGDCCE +CV H + DD GF C+DP C D + I A + +CG G G D + + E C G G DC E C+ +D G + P E+ C GDG+C+ +NNN +C +DGGDCCE +C D PN+ C F C+DP C +P G+G+CD D N C +DGGDCCE +C
Sbjct: 54 CDTSELGDGYCDQDNNNEICGYDGGDCCECTCVACKKHGQSPWDDDDDWLCSSGGSGFACIDP----AAPCVED-DDITADMV---ENCGYVRGLG----DGWCHEENNNELC------GYD--GGDC--CECTCVAPPADDDWXXXXXXXXYGACGGGFACIDPSAACVDDDEVTVGMVES-----CDTVSIGDGYCNMDNNNEACAYDGGDCCECTCEDTPNNRCGRW----SSFACIDPAAPCVDDDSFTVDMIDNCEYPGGIGNGWCDVDNNNELCAYDGGDCCECTC 314
BLAST of mRNA_L-elsbetiae_contig1201.1711.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.690e-22 Identity = 92/282 (32.62%), Postives = 118/282 (41.84%), Query Frame = 1
Query: 481 DGFCDTENNNASCGFDGGDCCEDSC-VDGPN---HICNEVIDDAGGFNCLDPNFGQEMMCTP---------DVEGI----RAGVACCPVSCGLCGGDG-----CGTRDSGSEQFSATEACCSGAETGVRSLGRDCSSTEAPCIVTEEEDGDTDGVTPVGPGLXXXXXXXXXXXXPEASPDSPCLPEYS---GDGFCDTENNNASCGFDGGDCCEESCVDGPNHICNEVIDDAGGFNCLDPNIAC-------FPEYSGDGFCDTDQNIASCGFDGGDCCEASC 1230
DG+CDT+ NNA CG+DGGDCC +C D H C ++ D G+NCLDP+ + TP D E + GV ++ CG DG C RD S +S G DC +AP + TD TP P A D P Y GDG CD NNN CG+DGGDCC +C + C+ +C DPN C + ++ DG+CD+ N C +DGGDCC C
Sbjct: 76 DGYCDTDLNNAECGWDGGDCCACTCGADSDEELAHPCGQLGD---GYNCLDPDVPDDCGVTPSPAAAIGYPDCEEYLYEWQDGVCDDNLNTAACGYDGGDCCRCTCRDYSSWGYSTCGY-----------YGYDCMDPDAPSACS------TDSPTP----------------SPAAGTDWPECEGYIYMIGDGSCDYYNNNEECGWDGGDCCSCTCEGSYYYSCSSY-----SMDCQDPNANCTTPSPTPYCPFASDGYCDSYYNTEDCDWDGGDCCAYGC 316
BLAST of mRNA_L-elsbetiae_contig1201.1711.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 110 bits (275), Expect = 2.820e-22 Identity = 87/271 (32.10%), Postives = 115/271 (42.44%), Query Frame = 1
Query: 478 GDGFCDTENNNASCGFDGGDCCEDSCVDGPNHICNEVIDDAGGFNCLDPNFGQEMMCTPDVEGIRAGVACCPV-----SCGLCGGDGCGTRDSGSEQFSATEACCSGAETGVRSLGRDCSSTE--APCIVTEEEDGDTDGVTPVGPGLXXXXXXXXXXXXPEASPDSPCLPEYSGDGFCDTENNNASCGFDGGDCCEESCVDGPNHICN-EVIDDAGGFNCLDPN------IACFPEYSG------DGFCDTDQNIASCGFDGGDCCEASC 1230
G+G CD E N SCG+DGGDCC +CVDGP + C+E G F+CL P+ G + + C + C D C D G + + T DCS + + +V E D D +T GD FCD+ENNN C +DGGDCC ++C + C + D GF+CLDP +A FPE +G DG C + N +CG+DGGDCC SC
Sbjct: 40 GNGRCDAELNVPSCGYDGGDCCSCTCVDGPLYWCSE-----GTFDCLYPDCGDNPASDLEFFETQDNTTKCNMFQNYPECNTLWSDCC-EMDCGGDYYCDTYRF-------------DCSDSTCLSQTVVAENPDCAGDWLT-------------------------------IGDEFCDSENNNPECAYDGGDCCADTCPLSIDSACGFDGFADYSGFDCLDPAFFDPTVVAEFPECTGSWSMIGDGQCQEENNNPACGYDGGDCCICSC 260
BLAST of mRNA_L-elsbetiae_contig1201.1711.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI) HSP 1 Score: 107 bits (268), Expect = 2.850e-22 Identity = 90/283 (31.80%), Postives = 119/283 (42.05%), Query Frame = 1
Query: 478 GDGFCDTENNNASCGFDGGDCCEDSCVDGPNHICNEVIDDAGGFNCLDPNFG--QEMMCTPDV-----EGIRAGVACCPV-----SCGLCGGDGCG-TRDSGSEQFSATEACCSGAETGVRSLGRDCSSTEAPCIVTEEEDGDTDGVTPVGPGLXXXXXXXXXXXXPEASPDSPCLPEYSGDGFCDTENNNASCGFDGGDCCEESCV---DGPNHICNEVIDDAGGFNCLDPNIACFPEYS---------------GDGFCDTDQNIASCGFDGGDCCEASCV 1233
G+G C+ NN CGFDGGDCCE +C DG + C + G+ C+DP+ + T D+ + R G C C GGD C T D + + C +TG+ G C +APC+ D D VT L C G+G+CD NN+ C +DGGDCCE +C DG + C + G F C+DP C + GDG CD + N CGFDGGDCC+ +CV
Sbjct: 99 GNGRCNMGNNIEECGFDGGDCCECTCEDGE-YTCGQYY----GYACIDPDATCVDDDAVTVDMMENCYDPSRIGNGACDSLLNNEDCAYDGGDCCECTCDPSRYPWYDSGVGC---QTGMYG-GFACIDPDAPCV-------DDDIVTAEMMDL--------------------CSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYC-----EPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECGFDGGDCCDCTCV 340
BLAST of mRNA_L-elsbetiae_contig1201.1711.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI) HSP 1 Score: 109 bits (272), Expect = 5.520e-22 Identity = 95/299 (31.77%), Postives = 122/299 (40.80%), Query Frame = 1
Query: 433 TPDPSADSPCVPEYSG---------DGFCDTENNNASCGFDGGDCCEDSCVDGPN----HICNEVIDDAGGFNCLDPNFGQEMMCTPDVEGIRAGVACCPVSC-----GLCGGDGCGTRDSGSEQFSATEACCS-----GAETGVRSLGRDCSSTEAPCIVTEEEDGDTDGVTPVGPGLXXXXXXXXXXXXPEASPDSPCLPEYS---GDGFCDTENNNASCGFDGGDCCEESCVDGPNHICNEVIDDAGGFNCLDPNIAC-------FPEYSGDGFCDTDQNIASCGFDGGDCCEASC 1230
TP PS SP EY G DG+CDT+ NNA CG+DGGDCC +C + H C ++ D G++CLDP+ + TP G C G+C D T + G + C G T G DC +AP + TD TP P A D P Y GDG CD NNN C +DGGDCC +C + C+ +C DPN C + ++ DG+CD+ N C +DGGDCC C
Sbjct: 54 TPAPSDGSP---EYLGCLGYTNHIKDGYCDTDLNNAECGWDGGDCCACTCGSDSDEELAHPCGQLGD---GYDCLDPDVPDDCGVTPS-PAAAIGYPDCEEYLYEWQDGVCD-DNLNTAECGYDGGDCCRCTCRDYNSWGYYTNCGYYGYDCMDPDAPSSCS------TDSPTP----------------SPAAGTDWPECEGYIYMIGDGSCDYYNNNEECDWDGGDCCSCTCEGSSYYSCSSY-----SMDCQDPNANCTTPSPTPYCPWASDGYCDSYYNTEDCDWDGGDCCAYGC 317
BLAST of mRNA_L-elsbetiae_contig1201.1711.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE) HSP 1 Score: 108 bits (271), Expect = 6.870e-22 Identity = 93/281 (33.10%), Postives = 116/281 (41.28%), Query Frame = 1
Query: 478 GDGFCDTENNNASCGFDGGDCCEDSCVDGPNHICNEVIDDAGGFNCLDPNFGQEMMCTPDVEGIRAGVACCPVSCGLCGGDGCGTRDSGSEQFSATEAC------CSGAETGVRS--------LGRDCSSTEAPCIVTEEEDGDTDGVTPVGPGLXXXXXXXXXXXXPEASPDSPCLPEYSGDGFCDTENNNASCGFDGGDCCEESCVD--GPNHICNEVIDDAGGFNCLDPNIACFP--------------EYSGDGFCDTDQNIASCGFDGGDCCEASC 1230
GDGFC ENNN C +DGGDCCE +CVD + C V F C+DP+ C D + I A +A SC GG G + + + E C C G+ S + C APC+ +D T+G+ C GDGFC+ NNN CG+DGGDCCE +CV C E F C+DP C EY GDG+CDT N C +DGGDCCE +C
Sbjct: 75 GDGFCSDENNNEVCDYDGGDCCECTCVDAF-YPCGYVA-----FACIDPSAA----CVDD-DNITADIA---ESCHDGGGYVAGLGNGYCNEANNIEECDYDAGDCCQCTCGIESDDLSDFSCVDFACVDPNAPCV----DDDVTEGMF------------------------EDCF--NFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTE-------FACIDPTAPCVDDDDVTADALENCMIEYLGDGYCDTYNNNEICDYDGGDCCECTC 304
BLAST of mRNA_L-elsbetiae_contig1201.1711.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI) HSP 1 Score: 106 bits (264), Expect = 5.190e-21 Identity = 94/257 (36.58%), Postives = 114/257 (44.36%), Query Frame = 1
Query: 145 CTPDVEGIRA-GVACCPVSCGLCGGDGCGTRESGSEQFSATEACCSGAETGVRSLGRDCSST-EAPCIVTEEEDGDADGVTPVGPGLAXXXXXXXXXTTPDPSADSPCVP----EYSGDGFCDTENNNASCGFDGGDCCEDS-------CVDGPNHICNEVIDDAGGFNCLDPNFGQEMM-CTPDVEGIRA-GVACCPVSCGLCGGDGCGTRDSGSEQFSATEACCSGAETGVRSLGRDCSST-EAPCIVTEEEDGD 867
C+ EGI GV CCP+ CG C GDGCGT GS +E+CC G GV+SLG C T EAPCI+ D D V A T C P + +GDG C T + G + CC + C D C +I + +D E C+ EGI GV CCP+ CG C GDGCGT GS +E+CC GV+SLG C T EAPCI+ D D
Sbjct: 338 CSDGTEGIDGNGVVCCPIGCGQCAGDGCGTA--GSANGLGSESCCGG---GVKSLGLYCDDTNEAPCIIGSRPDTDD-----VDSESADETQTCSDGTEGIDGNGVVCCPIGCGQCAGDG-CGTAGSANGLGSES--CCGNGVKSLGLYCDDTNEAPC--IIGSRPDTDDVDSESADETQTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTA--GSANGLGSESCCGN---GVKSLGLYCDDTNEAPCIIGSRPDTD 574 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1201.1711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1201.1711.1 >prot_L-elsbetiae_contig1201.1711.1 ID=prot_L-elsbetiae_contig1201.1711.1|Name=mRNA_L-elsbetiae_contig1201.1711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=414bp HSQCPPDLPESSIRSVSGVIMVIAKMHLALVASFLLVFLSGAQGQEVMCTback to top mRNA from alignment at L-elsbetiae_contig1201:7033..12894- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1201.1711.1 ID=mRNA_L-elsbetiae_contig1201.1711.1|Name=mRNA_L-elsbetiae_contig1201.1711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5862bp|location=Sequence derived from alignment at L-elsbetiae_contig1201:7033..12894- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1201:7033..12894- >mRNA_L-elsbetiae_contig1201.1711.1 ID=mRNA_L-elsbetiae_contig1201.1711.1|Name=mRNA_L-elsbetiae_contig1201.1711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2484bp|location=Sequence derived from alignment at L-elsbetiae_contig1201:7033..12894- (Laminarionema elsbetiae ELsaHSoW15)back to top |