prot_L-elsbetiae_contig12009.1710.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12009.1710.1
Unique Nameprot_L-elsbetiae_contig12009.1710.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length1009
Homology
BLAST of mRNA_L-elsbetiae_contig12009.1710.1 vs. uniprot
Match: D7FNI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI5_ECTSI)

HSP 1 Score: 555 bits (1429), Expect = 5.120e-173
Identity = 491/1103 (44.51%), Postives = 550/1103 (49.86%), Query Frame = 0
Query:    6 GGIRR-AAGEPPLEHPYAALALAVALSASQRWAAPPGTHHDEGXXXXXXXXXXXXXXXXXRRPSPGALLLGGPTGEGHGDGE--------LAGFGGESSRLWSTDSEHDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDGGTQEWLQAFEHDGERSPRTDGYATDGSEAEQRCGRWGKDEVDARPGAAPPPALPSSPAQLAT---------ASRPPWPPAVRHNYGTPCIGADIRSLGGGGSTGGRIGVGESGVVPARFFLRPCQTLEACQTLAGTAAGRRR-SIPEAEVVRAALHMLQGLSGDIFVR-----VDNTPPQGYSHRRRHNLPDPWTKNGGSGGRKPARRNASR---VNGSAEPDRANLPSEQEWFSLSASAVCDLAVASLSPGALASLLGDLVRLGSVAEYLRAFVADARASTSVAAAAAAYHRSLYLRQTTRGGSGGGSGRGQDGRGGAGEVGAPS----SAETIVGLLSLLRPEAESLEATKNLVEAGAGWWVNTLPEGGGSQRLPVGG-----SAEAIVGRGSG-GLRERTGRLLAVLHDALVSSALVGTGLP---RQGGVGDSLRARRRRRHGWLLRVFCAVLAPYLRLLDPWINEGRVVDPHGELFLSQSGGSG-----------------------------GGGPVVHVWDTGIVLHSKALPPFLAPLAPAVALAGQDISLTRRVRALAAXXXXXXXXXXXXXXXXRGR----------SRPVSGGAGLTASPEGDTFSLAEHLVESLQRLAIRVRGANDAGLARKLREEEGPPDRVSTVPPSGGAGDLGQAGLEDDDDQGRKERGGEAIAAAGTGGKEDDGVAVIAVXXXXXXGVAAKAESETAAGDGPADGLAKESALALEPGGGGEIDLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATVADGKEDDLLELGFFGGTARMALEPGAMFRRAVHPALAAPWLPLPXXXXXXXXXXXXXXXQLSPTRRSAAPVPEQRTAPGSVTGA-----GVGSETARDE----------------EEDVARALPPAMVLETCLLGPLREHCRLAGSSCLGTFSDELGIVGLAGAVQ 1008
            GG+ + AA  PPLEHPYAALALA+ALS SQRWAA       EG               XX            P  +   +GE        LAGF G+SSRLWS+DS+                                     D+GGT+EWLQAFE DGE SPR  GY     EAE R GRWGK E +        P  PS P   +          A R   PPA RHNYG+PCIGADIRSL      GGR G    G V    FLRPCQTLEACQT  G A GRRR SIPEAEVVRAALHML GLSGDIFVR       +T  +  S + RH                       R   V+GSA   R      QEWFSLS SA  DLAVASLSP ALA +LGDLVR+GS  EYLRAFV DA  S SVAA AAA      LRQ    G G       +GR  A E  + S    S ETIVGLLSLLRPEAESLE T+ LVE GAGWW                       AE  VG GSG GL ERTGRLL+VLHDALVSSALVG G     +  GVGD+  AR  RR GWLL +FC VLAPYLRL+D WI EGR++DPHGELF S+ GG                               G  PVVHVWDTGIVLHSKALPPFLAPLAPAVALAGQDISL RRVRAL  XXXXXXXXXXXXXXXX             SR    GA   ASP  +TFSLAE L ESL+RLA RVR ANDAG +RK  +++G                                        AG  G+ D        XXXXXX   A     +++G    DG+               IDL +                                           K+DD  ELGFFGGTA++AL+PGAMF+R +HP+LA P  P                     TR  +  V  +R A   + G      G GS   R                  E++VA+ALPP MVLETCLLG LREHCRLA SSCL  F+DELGIV +AG ++
Sbjct:  103 GGVNKTAAASPPLEHPYAALALALALSGSQRWAAAREAEV-EGDEKEGDTPDAESVEGXXXXXXXXXXXXXXPARDEE-EGEERQGAAELLAGFEGDSSRLWSSDSDEGSELEGGPEEQEEEEDGVGSFSSALPVVEDV-----DEGGTREWLQAFEDDGEGSPRAAGYTAGEIEAE-RSGRWGKVENNGASTQLVEPLAPSYPPSSSPNTGVDSKNLARRASHPPAARHNYGSPCIGADIRSL------GGRRGA-HDGDVHGSSFLRPCQTLEACQTRGGKAVGRRRRSIPEAEVVRAALHMLAGLSGDIFVRRVRGDASDTRGEQLSQQERHRAVGARGTGXXXXXXXXXXXXXDRWDVVSGSARARRG-----QEWFSLSESAASDLAVASLSPEALAGVLGDLVRVGSTVEYLRAFVTDAEGSASVAAEAAA----AVLRQRVPRGHG-------EGRDTAVEHDSSSTSSGSGETIVGLLSLLRPEAESLELTRQLVEDGAGWWXXXXXXXXXXXXXXXXXXXXXTGAERHVGGGSGAGLHERTGRLLSVLHDALVSSALVGIGPTPPEKSRGVGDTA-ARAPRRRGWLLHMFCEVLAPYLRLVDSWITEGRLLDPHGELFFSRIGGXXXXXXXXXXXXXXXXXADNIGGHNRQATAVGRDPVVHVWDTGIVLHSKALPPFLAPLAPAVALAGQDISLMRRVRALVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRKARTGA--MASPGSETFSLAETLSESLRRLAERVRRANDAGPSRKKDQDDG----------------------------------------AGCTGRGDRRSGXXXXXXXXXXXXXAAVSPVSSSG---LDGI---------------IDLEESREG--------------------------------------AKQDD--ELGFFGGTAQLALKPGAMFQRPLHPSLAPPSPPS--------------------TRGPSPAVGGRRIASCFIAGMSRRGRGGGSSDVRGAGGYPXXXXXXXXEATMEDEVAKALPPTMVLETCLLGALREHCRLASSSCLSVFADELGIVSIAGVLR 1053          
BLAST of mRNA_L-elsbetiae_contig12009.1710.1 vs. uniprot
Match: A0A6H5L6D8_9PHAE (GCP_N_terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D8_9PHAE)

HSP 1 Score: 531 bits (1367), Expect = 4.820e-164
Identity = 521/1214 (42.92%), Postives = 588/1214 (48.43%), Query Frame = 0
Query:    6 GGIRRAAG-EPPLEHPYAALALAVALSASQRWAAP--------------PGTHHDEGXXXXXXXXXXXXXXXXXRRPSPGALLLGGPTGEGHGDGELAGFGGESSRLWSTDSEHDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDGGTQEWLQAFEHDGERSPRTDGYATDGSEAEQRCGRWGKDEVD------ARPGAAPPPALPSSPAQLATAS----RPPWPPAVRHNYGTPCIGADIRSLGGGGSTGGRIGVGESGVVPARFFLRPCQTLEACQTLAGTAAGRRR-SIPEAEVVRAALHMLQGLSGDIFVR-----VDNTPPQGYSHRRRHNLPDP------WTKNGGSGGRKPARRNASRVNGSAEPDRANLPSEQEWFSLSASAVCDLAVASLSPGALASLLGDLVRLGSVAEYLRAFVADARASTSVAAAAAAYHRSL-------------------YLRQTTRGGSGGGSG--------------------------RGQDGRGGAGEVGAPS--------SAETIVGLLSLLRPEAESLEATKNLVEAGAGWWVNT---LPEG----GGSQRLPVGGSAEAIVGRGSG-GLRERTGRLLAVLHDALVSSALVGTGLP---RQGGVGDSLRARRRRRHGWLLRVFCAVLAPYLRLLDPWINEGRVVDPHGELFLSQSGGSG------------------------------GGGPVVHVWDTGIVLHSKALPPFLAPLAPAVALAGQDISLTRRVRALAAXXXXXXXXXXXXXXXXRGRSRPV-------SGGAGLTASPEGDTFSLAEHLVESLQRLAIRVRGANDAGLARKLREEEGPP-------DR------------------VSTVPPSGGAG--DL----------GQAGLEDDDDQGRKE-------------RGGEAIAAAGTGGKEDDGVAVIAVXXXXXXGVAAKAESETAAGDGPADGLAKESALA-LEPGGGGEIDLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATVADG-KEDDLLELGFFGGTARMALEPGAMFRRAVHPALAAPWLPLPXXXXXXXXXXXXXXXQLSPTRRSAAPVPEQRTAPGSVTGAG---------------------VGSETARDEEEDVARALPPAMVLETCLLGPLREHCRLAGSSCLGTFSDELGIVGLAGAVQ 1008
            GG+ +AA   PPLEHPYAALALA+ALS SQRWAA               P     EG              XX  R     LL              AGF G+SSRLWS+DS+     XXXXXX                          D+GGT+EWLQAFE DGE SPR DG  T G    +R G  GK E +      A P  AP  + PSSP     +     R   PPA RHNYG PCIGADIR+L      GGR G    G V    FLRPCQTLEACQT  G A GRRR SIPEAEVVRAALHML GLSGDIFVR       +T  +    + RH               GGS G  P+RR    V GSA   R      QEWFSLS SA  DLAVASLSP ALA +L DL+R+GS AEYLRAFVADA  S SVAA A                          Y R   RG   G +                           R Q G+G                 S ETIVGLLSLLRPEAESLE T+ LVE GAGWWV T     EG       +R     +AE  VG GSG GL ERTGRLL+VLHDALVSSALVG G     +  GVGD+  A   RR GWLL VFC VLAPYLRL+D WI EGR++DPHGELF S+ GG                                GG PVVHVWDTGIVLHSKALPPFLAPLAPAVALAGQDISL RRVRAL  XXXXXXXXXXXXXXXX                G G  +SP  +TFSLAE L ESL++LA RVR ANDAG +RK  +++G         DR                  VS V  SG  G  DL          G+     + ++G                 G EA A A T    + G   +A             E E    DG   G      +  +     G     D  X                     XXXXXXXXXXXX    A+G  + D  ELGFFGGTA++AL+PGAMF+R +HP+LA P  P                     TR+ +  V  +RTA   +TG                          E     E++VA+ALPP MVLETCLLG LREHCRLA SSCL  F+DELG V +AG ++
Sbjct:  103 GGVNKAAAASPPLEHPYAALALALALSGSQRWAAAKEAEVEGDEREGDTPDAESIEGGGCGGSGRSARDEEXXEEREGAAELL--------------AGFEGDSSRLWSSDSDX----XXXXXXGPEEQEQEEEDGVGSLSSALPGVEDVDEGGTREWLQAFEDDGEGSPRADG-CTAGEIETERFGHRGKVENNGASTQLAEP-LAPSYSPPSSPNTGVDSKNLTRRASHPPAARHNYGAPCIGADIRNL------GGRRGA-RDGDVDGASFLRPCQTLEACQTRGGEAVGRRRRSIPEAEVVRAALHMLAGLSGDIFVRRVNGDASDTGGEQLPQKGRHGAAGTRGTGXXXRTGGGSSG--PSRRWGV-VTGSASARRG-----QEWFSLSESAASDLAVASLSPEALAGVLEDLLRVGSTAEYLRAFVADAEGSASVAAEAXXXXXXXXXXXXXXXXXXXXXXASKSYGRGKERGPKHGLTTQAFVACVRRHLESFEDTVARRDRWLYRRQQGQGXXXXXXXXXXXXXXXXXSGETIVGLLSLLRPEAESLELTRQLVEDGAGWWVATPXXXXEGVWPRNRRRRRTGDTNAERHVGGGSGAGLHERTGRLLSVLHDALVSSALVGIGPTPPEKSRGVGDT-EALAPRRRGWLLHVFCEVLAPYLRLVDSWITEGRLLDPHGELFFSRIGGXXXXXXXXXXXXXXXXXXADNIGGHNRQATAVGGDPVVHVWDTGIVLHSKALPPFLAPLAPAVALAGQDISLMRRVRALVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXERKAGTGAMSSPGSETFSLAETLSESLRQLAGRVRRANDAGPSRKKDQDDGAGCTGRGRGDRRSGGXXXXXXXXXXXXXAVSPVSSSGLGGIVDLEESRGGKHGDGRNSASTESEEGATSPAXXXXXXXXXXXXGTEAEATAATEKNRESGSVSVAAP-----------EGEDVTNDGSDGGDCSGVGVGGVRDRRTGSSGFGDGGXGGPATSPDVLTEEASADVGGDXXXXXXXXXXXXXXXAAEGANQGDDPELGFFGGTAQLALKPGAMFQRPLHPSLAPPSPPS--------------------TRQPSPAVGGRRTASCFITGISHXXXXXXXXXXXXXXXXXXXXXXEEDEATMEDEVAKALPPTMVLETCLLGALREHCRLASSSCLAVFADELGTVSIAGVLR 1249          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12009.1710.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNI5_ECTSI5.120e-17344.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6D8_9PHAE4.820e-16442.92GCP_N_terminal domain-containing protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 103..123
NoneNo IPR availablePANTHERPTHR19302:SF33GAMMA-TUBULIN COMPLEX COMPONENT 5coord: 208..988
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..558
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 576..1008
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 559..575
IPR041470Gamma tubulin complex component protein, N-terminalPFAMPF17681GCP_N_terminalcoord: 560..652
e-value: 3.5E-9
score: 36.7
IPR007259Gamma-tubulin complex component proteinPANTHERPTHR19302GAMMA TUBULIN COMPLEX PROTEINcoord: 208..988

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12009contigL-elsbetiae_contig12009:1580..5252 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12009.1710.1mRNA_L-elsbetiae_contig12009.1710.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12009 1580..5273 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12009.1710.1 ID=prot_L-elsbetiae_contig12009.1710.1|Name=mRNA_L-elsbetiae_contig12009.1710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1009bp
MVSGDGGIRRAAGEPPLEHPYAALALAVALSASQRWAAPPGTHHDEGAVV
SSPAAANTERKKTTRRPSPGALLLGGPTGEGHGDGELAGFGGESSRLWST
DSEHDEEDDWKEEEEEVEEEEEEKDDGGPSAAPPPPLEAADDGGTQEWLQ
AFEHDGERSPRTDGYATDGSEAEQRCGRWGKDEVDARPGAAPPPALPSSP
AQLATASRPPWPPAVRHNYGTPCIGADIRSLGGGGSTGGRIGVGESGVVP
ARFFLRPCQTLEACQTLAGTAAGRRRSIPEAEVVRAALHMLQGLSGDIFV
RVDNTPPQGYSHRRRHNLPDPWTKNGGSGGRKPARRNASRVNGSAEPDRA
NLPSEQEWFSLSASAVCDLAVASLSPGALASLLGDLVRLGSVAEYLRAFV
ADARASTSVAAAAAAYHRSLYLRQTTRGGSGGGSGRGQDGRGGAGEVGAP
SSAETIVGLLSLLRPEAESLEATKNLVEAGAGWWVNTLPEGGGSQRLPVG
GSAEAIVGRGSGGLRERTGRLLAVLHDALVSSALVGTGLPRQGGVGDSLR
ARRRRRHGWLLRVFCAVLAPYLRLLDPWINEGRVVDPHGELFLSQSGGSG
GGGPVVHVWDTGIVLHSKALPPFLAPLAPAVALAGQDISLTRRVRALAAS
SSSSSPFSFGSSSAARGRSRPVSGGAGLTASPEGDTFSLAEHLVESLQRL
AIRVRGANDAGLARKLREEEGPPDRVSTVPPSGGAGDLGQAGLEDDDDQG
RKERGGEAIAAAGTGGKEDDGVAVIAVAVSAAAGVAAKAESETAAGDGPA
DGLAKESALALEPGGGGEIDLSDDGGGGGGPATQPETKATEGGLVAPAAS
SSSSSSAAATATVADGKEDDLLELGFFGGTARMALEPGAMFRRAVHPALA
APWLPLPPPPPPPPLQQQQQQRQLSPTRRSAAPVPEQRTAPGSVTGAGVG
SETARDEEEDVARALPPAMVLETCLLGPLREHCRLAGSSCLGTFSDELGI
VGLAGAVQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041470GCP_N
IPR007259GCP