mRNA_L-elsbetiae_contig1012.173.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1012.173.1
Unique NamemRNA_L-elsbetiae_contig1012.173.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1012.173.1 vs. uniprot
Match: A0A6H5K9B1_9PHAE (Peptidase S59 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9B1_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 6.560e-9
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:  100 PMKIRTGTGHPSWRKT-------PGAAQDDMLASISNMKEFEGKSHEELRLEDYCKNRRTSL 264
            P + R GTG+P+WR+T          A   ML SIS MKE+EGKSHEELR+EDY  NR+ SL
Sbjct:  208 PAQQRQGTGNPAWRETRAEDPTGKAGANPGMLQSISAMKEYEGKSHEELRVEDYLLNRKNSL 269
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1012.173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9B1_9PHAE6.560e-954.84Peptidase S59 domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1012contigL-elsbetiae_contig1012:26414..27292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue4.5e-07
Seed eggNOG ortholog2880.D7FX93
Preferred nameNUP145
KEGG koko:K14297,ko:K18716,ko:K18720
KEGG TC1.I.1
KEGG Pathwayko03013,ko05164,map03013,map05164
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000972,GO:0000973,GO:0003674,GO:0003676,GO:0003723,GO:0005048,GO:0005198,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006325,GO:0006342,GO:0006344,GO:0006348,GO:0006355,GO:0006403,GO:0006405,GO:0006406,GO:0006409,GO:0006606,GO:0006607,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0008104,GO:0008139,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016458,GO:0016973,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0031080,GO:0031081,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031503,GO:0031967,GO:0031975,GO:0032386,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034397,GO:0034398,GO:0034504,GO:0034613,GO:0034629,GO:0034641,GO:0035392,GO:0036228,GO:0040029,GO:0042277,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044464,GO:0044613,GO:0044614,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046822,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051031,GO:0051049,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051640,GO:0051641,GO:0051649,GO:0051664,GO:0051668,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0080090,GO:0090304,GO:0090435,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.structural constituent of nuclear pore
EggNOG OGsKOG0845@1,KOG0845@2759
Ec32 ortholog descriptionPeptidase S59, nucleoporin
Ec32 orthologEc-26_004030.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Exons2
Model size437
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815243.62018-CDS-L-elsbetiae_contig1012:26415..266551622815243.62018-CDS-L-elsbetiae_contig1012:26415..26655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1012 26416..26655 -
1691682792.0363765-CDS-L-elsbetiae_contig1012:26415..266551691682792.0363765-CDS-L-elsbetiae_contig1012:26415..26655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1012 26416..26655 -
1622815243.633026-CDS-L-elsbetiae_contig1012:27097..272921622815243.633026-CDS-L-elsbetiae_contig1012:27097..27292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1012 27098..27292 -
1691682792.050103-CDS-L-elsbetiae_contig1012:27097..272921691682792.050103-CDS-L-elsbetiae_contig1012:27097..27292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1012 27098..27292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1012.173.1prot_L-elsbetiae_contig1012.173.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1012 26416..27292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1012.173.1

>prot_L-elsbetiae_contig1012.173.1 ID=prot_L-elsbetiae_contig1012.173.1|Name=mRNA_L-elsbetiae_contig1012.173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
GGSWEKGRFGAAEEKGVLVVPFKPENSGKLSEGPMKIRTGTGHPSWRKTP
GAAQDDMLASISNMKEFEGKSHEELRLEDYCKNRRTSLNALPKPESSSSP
FIPPSAATAAANATATNTATWEVDQSTQSSNVKQRRHEQGNPVLT
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mRNA from alignment at L-elsbetiae_contig1012:26414..27292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1012.173.1 ID=mRNA_L-elsbetiae_contig1012.173.1|Name=mRNA_L-elsbetiae_contig1012.173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=879bp|location=Sequence derived from alignment at L-elsbetiae_contig1012:26414..27292- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGGAGTTGGGAGAAGGGCCGGTTCGGTGCTGCAGAGGAGAAGGGGGT
ATTGGTGGTTCCTTTCAAGCCTGAGAACAGCGGCAAGCTCTCTGAGGGCC
CTATGAAAATCCGGACGGGAACAGGGCACCCGTCGTGGCGGAAGACGCCC
GGTGCGGCTCAGGACGACATGCTCGCGTCGATTTCCAACATGAAGGTGAG
TAGCATGCGGAGTGGAGGCACCGGGCAAACCGCACTGCCAGAAAAATTGC
GTCCAGAATATTCGGAGAACATGCAGCAGCGCCTCACTCAGATGCTGTTC
TCTCTGGAGAGCTGGCTGCTTTTGAATGATCCGTCGACTTGACGTGTGCG
CCGCCAGTCAATCTAGCACCGTATGTGCCGCATTCGATCGGCGAAGTCCT
CACGCCGTTTCACAGGTATATGGTTCGCCAATGCCGTTGCCACCACCGAA
CACCTCTCTGCTCACGACATACCTGGCGCCTCCCCTCTCTCCCTTCCCCA
AGCACCTTCAACCTCCTTCGCCTTTCTCAATCGCCTCGGTCGACGAAACG
AGGCGCATTATGTGCTGGAGTTTGAAAGGCTACCTTCGAGCTTTTTAATA
TGTCCTCTGTCATATCTGGACGCGCGCTCACCTGCAGGAGTTCGAGGGGA
AGAGCCACGAGGAGCTCCGCCTGGAAGATTACTGCAAGAACCGCAGGACC
AGCTTGAACGCCCTACCCAAGCCTGAGTCGTCCAGTTCGCCGTTCATCCC
ACCCTCCGCTGCAACCGCCGCAGCCAACGCCACTGCCACCAACACGGCGA
CGTGGGAAGTCGACCAGAGTACCCAGTCTTCGAATGTCAAGCAGCGCCGG
CACGAGCAGGGCAACCCCGTCTTGACTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1012:26414..27292-

>mRNA_L-elsbetiae_contig1012.173.1 ID=mRNA_L-elsbetiae_contig1012.173.1|Name=mRNA_L-elsbetiae_contig1012.173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig1012:26414..27292- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGGAGTTGGGAGAAGGGCCGGTTCGGTGCTGCAGAGGAGAAGGGGGT
ATTGGTGGTTCCTTTCAAGCCTGAGAACAGCGGCAAGCTCTCTGAGGGCC
CTATGAAAATCCGGACGGGAACAGGGCACCCGTCGTGGCGGAAGACGCCC
GGTGCGGCTCAGGACGACATGCTCGCGTCGATTTCCAACATGAAGGGCGG
GAGTTGGGAGAAGGGCCGGTTCGGTGCTGCAGAGGAGAAGGGGGTATTGG
TGGTTCCTTTCAAGCCTGAGAACAGCGGCAAGCTCTCTGAGGGCCCTATG
AAAATCCGGACGGGAACAGGGCACCCGTCGTGGCGGAAGACGCCCGGTGC
GGCTCAGGACGACATGCTCGCGTCGATTTCCAACATGAAGGAGTTCGAGG
GGAAGAGCCACGAGGAGCTCCGCCTGGAAGATTACTGCAAGAACCGCAGG
ACCAGCTTGAACGCCCTACCCAAGCCTGAGTCGTCCAGTTCGCCGTTCAT
CCCACCCTCCGCTGCAACCGCCGCAGCCAACGCCACTGCCACCAACACGG
CGACGTGGGAAGTCGACCAGAGTACCCAGTCTTCGAATGTCAAGCAGCGC
CGGCACGAGCAGGGCAACCCCGTCTTGACTGAGTTCGAGGGGAAGAGCCA
CGAGGAGCTCCGCCTGGAAGATTACTGCAAGAACCGCAGGACCAGCTTGA
ACGCCCTACCCAAGCCTGAGTCGTCCAGTTCGCCGTTCATCCCACCCTCC
GCTGCAACCGCCGCAGCCAACGCCACTGCCACCAACACGGCGACGTGGGA
AGTCGACCAGAGTACCCAGTCTTCGAATGTCAAGCAGCGCCGGCACGAGC
AGGGCAACCCCGTCTTGACT
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