mRNA_L-elsbetiae_contig8023.17008.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8023.17008.1
Unique NamemRNA_L-elsbetiae_contig8023.17008.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 2.030e-79
Identity = 200/377 (53.05%), Postives = 219/377 (58.09%), Query Frame = 2
Query:  308 MTSTAIFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAAD------------DRPETVTAADPAGRCLAALVAGCQLVVLPALRH--SRTLLKEKQS--------------------LCACFGMSTVSSFVTCFFIICDL--------------------------------------------------LVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 1186
            MTSTAI+TCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKAS LELYRVH DD +     XXXXXXXXXXXXXXXXXXX               A+G+YLELAGTFPLAGNIT+LA+IP      DIL V+FG AKMALVAYD++LGRLET+SIHNFDAGAIGPGA              DRP T++++DPAGRCLAA+VAGCQLVVLPA RH      + E+                        A  G S                                                                 L  A +  FIKAAAFLEGFHEP LALLYEPIQTCAGRLASKRSTCRL + SINL Q   P
Sbjct:    1 MTSTAIYTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASTLELYRVHRDDHSXXXXXXXXXXXXXXXXXXXXXXXX---------------ASGYYLELAGTFPLAGNITALAVIP------DILVVSFGVAKMALVAYDSVLGRLETISIHNFDAGAIGPGAGGVESGYGLAAALKDRPRTISSSDPAGRCLAAVVAGCQLVVLPARRHVPGSVFVSEEAKRXXXXXXXXXXXXXXXXXXXXAAGAGESAAGGVAXXXXXXXXXXXXXXXXXSVSARESDSEGEEDGGLGNGATAKGDGGAGGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAP 356          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: A0A7K9T8I3_9AVES (CPSF1 factor (Fragment) n=1 Tax=Galbula dea TaxID=1109041 RepID=A0A7K9T8I3_9AVES)

HSP 1 Score: 127 bits (319), Expect = 3.560e-28
Identity = 93/288 (32.29%), Postives = 138/288 (47.92%), Query Frame = 2
Query:  323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 1186
            ++  Y+Q HPPTG++ A+F    ++  R+LVVA  S L++YR++HD    A                                          LEL  TF   GN+ S+A + +   ++D L ++F DAK+++V YD     L+T+S+H F+   +  G   +        DP GRC   L+ G +LVVLP  R S  L  E + L    G    SSF+  + I  D+  L      I    FL G++EPTL +LYEP QT  GR+A ++ TC +V  S+N+ Q   P
Sbjct:    1 MYAVYKQAHPPTGLEFAIFCHFFSSTERNLVVAGTSQLQVYRLNHDCETGAKGDRNGEGKGHREK----------------------------LELLATFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDGFVQNVHIPQVRVDPDGRCAVMLIYGTRLVVLPFRRDS--LADEHEGL---VGEGQKSSFLPSYII--DVRELDEKLLNIIDMQFLYGYYEPTLLILYEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHP 253          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: S4RE76_PETMA (Cleavage and polyadenylation specific factor 1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RE76_PETMA)

HSP 1 Score: 126 bits (316), Expect = 5.450e-28
Identity = 94/290 (32.41%), Postives = 140/290 (48.28%), Query Frame = 2
Query:  323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVPFL 1192
            +++ +R++HPPTG++HAV+    ++  R+LVVA  S L++YR+ HD     TE+                                       LE   +F L GNI S+A + +    +D L +AF DAK+++V YD     L+T+S+H F+   I  G   +    V   DP  RC A LV G +LVVLP  R   TL  E +      G+S           + DL  L      +    FL G++EPTL +L+EP QT  GR+A ++ TC +V  S+N+AQ   P +
Sbjct:    1 MYSVHRKVHPPTGLEHAVYCHFFSSQERNLVVAGGSQLQIYRLIHD-----TESVSKGDKPTDGKPRKDK-----------------------LEFMSSFSLFGNIMSMASVRLSGSSRDALLLAFMDAKLSVVEYDPATHDLKTLSLHYFEEDEIKDGFHGNVHVPVVRVDPDARCAAMLVYGTRLVVLPFRRE--TLADEAEG-----GVSEGQKPSLLPSYVIDLRGLDEKLLNVLDMQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCGIVAISLNIAQRVHPII 255          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: UPI0009A38663 (cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A38663)

HSP 1 Score: 125 bits (314), Expect = 8.100e-28
Identity = 90/288 (31.25%), Postives = 138/288 (47.92%), Query Frame = 2
Query:  323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 1186
            ++  YRQ HPPTG++ A++ S  +   R+LVVA  S L++YR+ HD  +                                            LE   +F L GN+ S+A + +   ++D L ++F DAK+++V YD     L+T+S+H F+   +  G   +    +   DP GRC   L+ G QLVVLP  R   TL  E+  +    G    SSF+  + I  D+  L      +    FL G++EPTL +L+EP QT  GR+A ++ TC +V  S+N+ Q   P
Sbjct:    1 MYAVYRQAHPPTGIEFAIYCSFFSNTERNLVVAGTSQLQVYRLIHDAESSVKGDKSSEVKGRKEK----------------------------LEQMASFSLFGNVMSIASVQLAGSKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELKDGFVQNVHIPLVRVDPDGRCAVMLIYGTQLVVLPFRRD--TLSDEQDGV---MGEGQKSSFLPSYII--DVRELDEKLLNVIDMQFLYGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHP 253          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: UPI0014035BA0 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014035BA0)

HSP 1 Score: 126 bits (316), Expect = 1.040e-27
Identity = 94/290 (32.41%), Postives = 140/290 (48.28%), Query Frame = 2
Query:  323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVPFL 1192
            +++ +R++HPPTG++HAV+    ++  R+LVVA  S L++YR+ HD     TE+                                       LE   +F L GNI S+A + +    +D L +AF DAK+++V YD     L+T+S+H F+   I  G   +    V   DP  RC A LV G +LVVLP  R   TL  E +      G+S           + DL  L      +    FL G++EPTL +L+EP QT  GR+A ++ TC +V  S+N+AQ   P +
Sbjct:    1 MYSVHRKVHPPTGLEHAVYCHFFSSQERNLVVAGGSQLQIYRLIHD-----TESVSKGDKPTDGKPRKDK-----------------------LEFMSSFSLFGNIMSMASVRLSGSSRDALLLAFMDAKLSVVEYDPATHDLKTLSLHYFEEDEIKDGFHGNVHVPVVRVDPDARCAAMLVYGTRLVVLPFRRE--TLADEAEG-----GVSEGQKPSLLPSYVIDLRGLDEKLLNVLDMQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCGIVAISLNIAQRVHPII 255          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: A0A7K8XUE5_9PICI (CPSF1 factor (Fragment) n=2 Tax=Piciformes TaxID=9219 RepID=A0A7K8XUE5_9PICI)

HSP 1 Score: 125 bits (314), Expect = 1.620e-27
Identity = 90/288 (31.25%), Postives = 137/288 (47.57%), Query Frame = 2
Query:  323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 1186
            ++  Y+Q HPPTG++ A+F    +   ++LVVA  S L +YR++HD P  +                                          LEL  +F   GN+ S+A + +   ++D L ++F DAK+++V YD     L+T+S+H F+   +  G   +        DP GRC   L+ G +LVVLP  R   TL +E   L    G    SSF+  + I  D+  L      I    FL G++EPTL +L+EP QT  GR+A ++ TC +V  S+N+ Q   P
Sbjct:    1 MYAVYKQAHPPTGLEFALFCHFFSPAEKNLVVAGTSQLYVYRLNHDSPTLSHPILEGKGHKEK------------------------------LELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPATHDLKTLSLHYFEEPELRDGFVQNVHIPQVRVDPDGRCAVMLIYGTRLVVLPFRRD--TLSEEHDGL---VGEGQKSSFLPSYII--DVRELDEKLLNIIDMQFLYGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHP 251          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: UPI0018F6BB81 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 n=1 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F6BB81)

HSP 1 Score: 125 bits (314), Expect = 1.900e-27
Identity = 92/288 (31.94%), Postives = 140/288 (48.61%), Query Frame = 2
Query:  323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 1186
            ++  YRQ HPPTG++ A++ S  +   R+LVVA  S L++YR+ HD   E+T                                         LE   +F L GN+ S+A + +   ++D L ++F DAK+++V YD     L+T+S+H F+   +  G   +    +   DP GRC   L+ G QLVVLP  R   TL  E+  +    G    SSF+  + I  D+  L      +    FL G++EPTL +L+EP QT  GR+A ++ TC +V  S+N+ Q   P
Sbjct:    1 MYAVYRQTHPPTGIEFAIYCSFFSNTERNLVVAGTSQLQVYRLIHDA--ESTVKGDKPSGRKEK-----------------------------LEQMASFSLFGNVMSIASVQLAGSKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELKDGFVQNIHIPLVRVDPDGRCAVMLIYGTQLVVLPFRRD--TLSDEQDGV---MGEGQKSSFLPSYII--DVRELDEKLLNVIDMQFLYGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHP 250          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: A0A401T3J4_CHIPU (Uncharacterized protein n=7 Tax=Chondrichthyes TaxID=7777 RepID=A0A401T3J4_CHIPU)

HSP 1 Score: 125 bits (314), Expect = 1.920e-27
Identity = 90/288 (31.25%), Postives = 138/288 (47.92%), Query Frame = 2
Query:  323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 1186
            ++  YRQ HPPTG++ A++ S  +   R+LVVA  S L++YR+ HD  +                                            LE   +F L GN+ S+A + +   ++D L ++F DAK+++V YD     L+T+S+H F+   +  G   +    +   DP GRC   L+ G QLVVLP  R   TL  E+  +    G    SSF+  + I  D+  L      +    FL G++EPTL +L+EP QT  GR+A ++ TC +V  S+N+ Q   P
Sbjct:   85 MYAVYRQAHPPTGIEFAIYCSFFSNTERNLVVAGTSQLQVYRLIHDAESSVKGDKSSEVKGRKEK----------------------------LEQMASFSLFGNVMSIASVQLAGSKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELKDGFVQNVHIPLVRVDPDGRCAVMLIYGTQLVVLPFRRD--TLSDEQDGV---MGEGQKSSFLPSYII--DVRELDEKLLNVIDMQFLYGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHP 337          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: A0A7L1N947_RHICY (CPSF1 factor (Fragment) n=1 Tax=Rhinopomastus cyanomelas TaxID=113115 RepID=A0A7L1N947_RHICY)

HSP 1 Score: 124 bits (312), Expect = 3.110e-27
Identity = 91/293 (31.06%), Postives = 137/293 (46.76%), Query Frame = 2
Query:  323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHHDDPNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRT-----LLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVP 1186
            ++  Y+Q HPPTG++ A+F    +   R+LVVA  S L++YR++HD    A                                          LEL   F   GN+ S+A + +   ++D L ++F DAK+++V YD     L+T+S+H F+   +  G   +        DP GRC   L+ G +LVVLP  R S +     LL E Q           SSF+  + I  D+  L      I    FL+G++EPTL +L+EP QT  GR+A ++ TC +V  S+N+ Q   P
Sbjct:    1 MYAVYKQAHPPTGLEFAIFCHFFSTSERNLVVAGTSQLQVYRLNHDCETSAKGDRNGEGKGHKEK----------------------------LELVAAFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDGFVQNVHPPRVRVDPDGRCAVMLIYGTRLVVLPFRRDSLSDEHDGLLPEGQK----------SSFLPSYII--DVRELDEKLLNIIDLQFLQGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHP 253          
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Match: A0A210PLT2_MIZYE (Cleavage and polyadenylation specificity factor subunit 1 n=3 Tax=Pectinidae TaxID=6566 RepID=A0A210PLT2_MIZYE)

HSP 1 Score: 124 bits (312), Expect = 3.430e-27
Identity = 86/295 (29.15%), Postives = 142/295 (48.14%), Query Frame = 2
Query:  323 IFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRV--HHDD---PNEATEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATGFYLELAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLETVSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRHSRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLEGFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVPFL 1192
            ++  Y+Q+HPPTG++H V+ +      R+LV+A  + L++YR+    DD   P++ TE+                                       LE   TF L GNI S+  + +    +D L ++F DAK+++V YD     L+T S+H F+   +  G + +        DP GRC A L+ G +LV+LP  R +  L++E  ++        +SS++       DL         +K   FL G++EPT+ +LYEP+QT AGR A +  +C +V  S+N+ +   P +
Sbjct:    1 MYALYKQIHPPTGIEHCVYCNFFNTSERNLVIAAVNQLDVYRLIPEVDDVESPDKWTESKRKQK----------------------------------LESLATFSLFGNIMSMQHVKLPGAHRDALLLSFMDAKLSVVEYDPGTHDLQTTSLHYFEESVMKDGFSTNYDIPTIRVDPDGRCAAMLIYGNRLVILPFRRDA--LMEETDNVVGASKSPIMSSYII------DLRQFDEKIPNVKDFQFLHGYYEPTVFILYEPLQTWAGRTAVRADSCSIVAISLNIQERVHPII 253          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8023.17008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W8_ECTSI2.030e-7953.05Cleavage and polyadenylation specificity factor CG... [more]
A0A7K9T8I3_9AVES3.560e-2832.29CPSF1 factor (Fragment) n=1 Tax=Galbula dea TaxID=... [more]
S4RE76_PETMA5.450e-2832.41Cleavage and polyadenylation specific factor 1 n=2... [more]
UPI0009A386638.100e-2831.25cleavage and polyadenylation specificity factor su... [more]
UPI0014035BA01.040e-2732.41cleavage and polyadenylation specificity factor su... [more]
A0A7K8XUE5_9PICI1.620e-2731.25CPSF1 factor (Fragment) n=2 Tax=Piciformes TaxID=9... [more]
UPI0018F6BB811.900e-2731.94cleavage and polyadenylation specificity factor su... [more]
A0A401T3J4_CHIPU1.920e-2731.25Uncharacterized protein n=7 Tax=Chondrichthyes Tax... [more]
A0A7L1N947_RHICY3.110e-2731.06CPSF1 factor (Fragment) n=1 Tax=Rhinopomastus cyan... [more]
A0A210PLT2_MIZYE3.430e-2729.15Cleavage and polyadenylation specificity factor su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8023contigL-elsbetiae_contig8023:6648..8454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.8
Seed ortholog evalue2.4e-71
Seed eggNOG ortholog2880.D7G8W8
KEGG koko:K14401
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG5161@1,KOG1896@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Ec32 ortholog descriptioncleavage and polyadenylation specificity factor CG10110-PA
Ec32 orthologEc-15_004530.2
Exons5
Model size1192
Cds size885
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8023.17008.1prot_L-elsbetiae_contig8023.17008.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8023 6955..8454 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.5208948-UTR-L-elsbetiae_contig8023:6647..69541622816887.5208948-UTR-L-elsbetiae_contig8023:6647..6954Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8023 6648..6954 +
1691683888.2308862-UTR-L-elsbetiae_contig8023:6647..69541691683888.2308862-UTR-L-elsbetiae_contig8023:6647..6954Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8023 6648..6954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816887.5317051-CDS-L-elsbetiae_contig8023:6954..73111622816887.5317051-CDS-L-elsbetiae_contig8023:6954..7311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8023 6955..7311 +
1691683888.2437482-CDS-L-elsbetiae_contig8023:6954..73111691683888.2437482-CDS-L-elsbetiae_contig8023:6954..7311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8023 6955..7311 +
1622816887.543621-CDS-L-elsbetiae_contig8023:7365..75091622816887.543621-CDS-L-elsbetiae_contig8023:7365..7509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8023 7366..7509 +
1691683888.2540681-CDS-L-elsbetiae_contig8023:7365..75091691683888.2540681-CDS-L-elsbetiae_contig8023:7365..7509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8023 7366..7509 +
1622816887.5555139-CDS-L-elsbetiae_contig8023:7545..76441622816887.5555139-CDS-L-elsbetiae_contig8023:7545..7644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8023 7546..7644 +
1691683888.2704036-CDS-L-elsbetiae_contig8023:7545..76441691683888.2704036-CDS-L-elsbetiae_contig8023:7545..7644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8023 7546..7644 +
1622816887.5658896-CDS-L-elsbetiae_contig8023:8031..81111622816887.5658896-CDS-L-elsbetiae_contig8023:8031..8111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8023 8032..8111 +
1691683888.2797968-CDS-L-elsbetiae_contig8023:8031..81111691683888.2797968-CDS-L-elsbetiae_contig8023:8031..8111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8023 8032..8111 +
1622816887.5777776-CDS-L-elsbetiae_contig8023:8249..84541622816887.5777776-CDS-L-elsbetiae_contig8023:8249..8454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8023 8250..8454 +
1691683888.289031-CDS-L-elsbetiae_contig8023:8249..84541691683888.289031-CDS-L-elsbetiae_contig8023:8249..8454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8023 8250..8454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8023.17008.1

>prot_L-elsbetiae_contig8023.17008.1 ID=prot_L-elsbetiae_contig8023.17008.1|Name=mRNA_L-elsbetiae_contig8023.17008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=295bp
MTSTAIFTCYRQLHPPTGVDHAVFGSVTAAGSRDLVVAKASILELYRVHH
DDPNEATEAAAAGAGGKTAGGGSGAGSSGAAAAATADNDDNDDATGFYLE
LAGTFPLAGNITSLAIIPVQQQQQDILAVAFGDAKMALVAYDALLGRLET
VSIHNFDAGAIGPGAADDRPETVTAADPAGRCLAALVAGCQLVVLPALRH
SRTLLKEKQSLCACFGMSTVSSFVTCFFIICDLLVLAHVDSFIKAAAFLE
GFHEPTLALLYEPIQTCAGRLASKRSTCRLVVFSINLAQVCVPFL
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mRNA from alignment at L-elsbetiae_contig8023:6648..8454+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8023.17008.1 ID=mRNA_L-elsbetiae_contig8023.17008.1|Name=mRNA_L-elsbetiae_contig8023.17008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1807bp|location=Sequence derived from alignment at L-elsbetiae_contig8023:6648..8454+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCCAGACCTCGACGCTGGGGCAGGCAACCTCCAACTTGGCGTGATTGA CCTCAGGCAAAAGAGAATCTGCGCAAAATCATCGATCAGCTACAGCATAT CACCGATCAACTGCAGCCGCACCGCAACGGCAGCTTCCGGCAGCACTGGC GATCAGCAAAATCACACTCTGAGCTACTAGCGCCTGGAGCGGTGGAAGCC GCTCAGAGGCAAAGCCACGAACCTAGTGTGCGCACGACCGCCTCCTTTGG TCGATCGATCTGCTACAAGCAACCGTGCCAGCCGGCGCATGGTCACGCCA ACTCCTCATGACTTCCACCGCCATCTTCACCTGCTATCGCCAGCTGCACC CACCAACCGGGGTCGACCACGCCGTCTTCGGCAGCGTCACCGCCGCCGGA TCCCGCGACCTTGTGGTCGCTAAGGCGTCCATCCTCGAGCTTTACCGCGT GCATCACGACGACCCCAACGAAGCAACCGAAGCAGCGGCGGCGGGGGCGG GCGGCAAGACGGCGGGCGGGGGCAGCGGCGCCGGCAGCAGCGGCGCCGCC GCCGCCGCCACCGCTGACAACGACGACAACGACGACGCCACCGGCTTCTA CCTCGAGCTGGCCGGCACCTTCCCTCTAGCGGGAAACATCACCTCCCTGG CCATCATCCCCGTGGTGGCAAGCAGCACCACACCAGAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGACATCCTCGCGGTCGC CTTCGGCGACGCGAAGATGGCTCTGGTGGCGTACGACGCCCTCCTCGGCC GGCTCGAGACCGTCTCCATCCACAACTTCGACGCCGGCGCGATAGGCCCC GGCGCCGCCGACGTGGAGCCCGGGTACGGCCTCGCCTCCGCCGTCAAGGA CCGCCCCGAGACGGTCACCGCCGCCGACCCGGCCGGACGCTGCCTGGCGG CGCTCGTGGCCGGCTGCCAGCTCGTCGTCCTCCCGGCCCTCCGGCACGTG CCCCGCTCCGTCTTCATGAGCGAGGAGGCCGCCAAGCGGAGGCGTACCTT GCGAGTCAGGCGGCGCGCGGCAGCGGCAGCGGCGGCGGCGGCAGCGGCGG CGGCGGCGCGAGGCAGCAGCAGCGGGGAGGCGGGGGATGCAAGCGATGTG GATGGCGGCGGCGGCGGCGGCGGCGGTGGGTCGGCGAGCGGGGACTCTGT CAGCGACGAAAGCGAGGACGAAAACCACGACGAGGTCGACAGCGTCGAGG GGGGCGGGGGTAGCAGGGACGGTAAGGGCAACGGCAACGGCGACGGGGAT GATCCGGGAGCGCACGCCGCGGTGGTTTCGAAGCCCTTCACGATAGACCT TGAGGAGGCCGGTGTCACGGGGTGAGTGAGTGAGAGCAGGACCCTTCTGA AAGAAAAGCAATCATTATGTGCTTGTTTTGGCATGTCGACAGTTTCATCA TTTGTGACCTGCTTGTCTTGGCATGTCGACAGTTTCATCATTTGTGATCT GCTTGTTGTGGCATGTCGACAGTTTCATCATTTGTGACCTGCTTGTCTTG GCATGTCGACAGTTTCATCATTTGTGATCTGCTTGTTTTGGCATGTCGAC AGTTTCATCATTTGTGATCTGCTTGTTTTGGCGCATGTCGACAGTTTCAT CAAGGCGGCCGCCTTCCTCGAGGGTTTCCACGAGCCGACGCTCGCGCTTC TCTACGAGCCGATCCAGACGTGCGCGGGGCGGTTGGCGTCGAAGCGCTCA ACCTGCAGGCTGGTCGTGTTCTCCATAAACTTGGCTCAGGTGTGTGTGCC GTTTTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8023:6648..8454+

>mRNA_L-elsbetiae_contig8023.17008.1 ID=mRNA_L-elsbetiae_contig8023.17008.1|Name=mRNA_L-elsbetiae_contig8023.17008.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1770bp|location=Sequence derived from alignment at L-elsbetiae_contig8023:6648..8454+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTTCCACCGCCATCTTCACCTGCTATCGCCAGCTGCACCCACCAAC
CGGGGTCGACCACGCCGTCTTCGGCAGCGTCACCGCCGCCGGATCCCGCG
ACCTTGTGGTCGCTAAGGCGTCCATCCTCGAGCTTTACCGCGTGCATCAC
GACGACCCCAACGAAGCAACCGAAGCAGCGGCGGCGGGGGCGGGCGGCAA
GACGGCGGGCGGGGGCAGCGGCGCCGGCAGCAGCGGCGCCGCCGCCGCCG
CCACCGCTGACAACGACGACAACGACGACGCCACCGGCTTCTACCTCGAG
CTGGCCGGCACCTTCCCTCTAGCGGGAAACATCACCTCCCTGGCCATCAT
CCCCGTGATGACTTCCACCGCCATCTTCACCTGCTATCGCCAGCTGCACC
CACCAACCGGGGTCGACCACGCCGTCTTCGGCAGCGTCACCGCCGCCGGA
TCCCGCGACCTTGTGGTCGCTAAGGCGTCCATCCTCGAGCTTTACCGCGT
GCATCACGACGACCCCAACGAAGCAACCGAAGCAGCGGCGGCGGGGGCGG
GCGGCAAGACGGCGGGCGGGGGCAGCGGCGCCGGCAGCAGCGGCGCCGCC
GCCGCCGCCACCGCTGACAACGACGACAACGACGACGCCACCGGCTTCTA
CCTCGAGCTGGCCGGCACCTTCCCTCTAGCGGGAAACATCACCTCCCTGG
CCATCATCCCCGTGCAGCAGCAGCAGCAGGACATCCTCGCGGTCGCCTTC
GGCGACGCGAAGATGGCTCTGGTGGCGTACGACGCCCTCCTCGGCCGGCT
CGAGACCGTCTCCATCCACAACTTCGACGCCGGCGCGATAGGCCCCGGCG
CCGCCGACCAGCAGCAGCAGCAGGACATCCTCGCGGTCGCCTTCGGCGAC
GCGAAGATGGCTCTGGTGGCGTACGACGCCCTCCTCGGCCGGCTCGAGAC
CGTCTCCATCCACAACTTCGACGCCGGCGCGATAGGCCCCGGCGCCGCCG
ACGACCGCCCCGAGACGGTCACCGCCGCCGACCCGGCCGGACGCTGCCTG
GCGGCGCTCGTGGCCGGCTGCCAGCTCGTCGTCCTCCCGGCCCTCCGGCA
CGACCGCCCCGAGACGGTCACCGCCGCCGACCCGGCCGGACGCTGCCTGG
CGGCGCTCGTGGCCGGCTGCCAGCTCGTCGTCCTCCCGGCCCTCCGGCAC
AGCAGGACCCTTCTGAAAGAAAAGCAATCATTATGTGCTTGTTTTGGCAT
GTCGACAGTTTCATCATTTGTGACCTGCTTAGCAGGACCCTTCTGAAAGA
AAAGCAATCATTATGTGCTTGTTTTGGCATGTCGACAGTTTCATCATTTG
TGACCTGCTTTTTCATCATTTGTGATCTGCTTGTTTTGGCGCATGTCGAC
AGTTTCATCAAGGCGGCCGCCTTCCTCGAGGGTTTCCACGAGCCGACGCT
CGCGCTTCTCTACGAGCCGATCCAGACGTGCGCGGGGCGGTTGGCGTCGA
AGCGCTCAACCTGCAGGCTGGTCGTGTTCTCCATAAACTTGGCTCAGGTG
TGTGTGCCGTTTTTGTTTCATCATTTGTGATCTGCTTGTTTTGGCGCATG
TCGACAGTTTCATCAAGGCGGCCGCCTTCCTCGAGGGTTTCCACGAGCCG
ACGCTCGCGCTTCTCTACGAGCCGATCCAGACGTGCGCGGGGCGGTTGGC
GTCGAAGCGCTCAACCTGCAGGCTGGTCGTGTTCTCCATAAACTTGGCTC
AGGTGTGTGTGCCGTTTTTG
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